1YAKA

Complex of bacillus subtilis tena with 4-amino-2-methyl-5-hydroxymethylpyrimidine
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
219
structure length
219
Chain Sequence
KFSEECRSAAAEWWEGSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSYTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFWGMAYRKEGWSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural characterization of the regulatory proteins TenA and TenI from Bacillus subtilis and identification of TenA as a thiaminase II.
pubmed doi rcsb
molecule tags Transcription
source organism Bacillus subtilis
molecule keywords Transcriptional activator tenA
total genus 101
structure length 219
sequence length 219
chains with identical sequence B, C, D
ec nomenclature ec 3.5.99.2: Aminopyrimidine aminohydrolase.
pdb deposition date 2004-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03070 TENA_THI-4 TENA/THI-4/PQQC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 1yakA00
3HLXA 3MVUA 1Z72A 3TGMA 3CZYA 1T5PA 1DVEA 1WOXA 2GM7A 1WOVA 1J02A 2QZCA 3OQLA 4MECA 2DY5A 4G7LA 2ZVUA 1OYKA 4WMHA 1UDDA 1WWMA 4G7TA 4WD4A 1XK0A 3MOOA 3NO6A 1V8XA 4LQXA 4WX0A 1WZDA 2A2OA 4G7PA 4NY7A 1IW1A 1UBBA 2Z68A 1YAKA 1XJZA 5BTQA 1XK1A 2Q32A 1TO9A 4G98A 1N45A 2A6BA 3RM5A 1S13A 1RTWA 2RD3A 4WWZA 2RGZA 1IVJA 3HOKA 1OZEA 1IX3A 1NI6A 1S8CA 3I9UA 1OZWA 2F2GA 1TO9B 3K4FA 2QPPA 3IBXA 1WZGA 4G8WA 1YAFA 4G8PA 4G7UA 1WNVA 4GPHA 4WWJA 4GOHA 1P3UA 1OTWA 1OZRA 4GPFA 1J77A 1WNXA 1XK2A 4RAJA 1WE1A 1RCWA 1P3VA 1OTVA 2E7EA 4G99A 1WNWA 1IX4A 1IW0A 1TWNA 1J2CA 3DDEA 1P3TA 1DVGA 2Q4XA 2GM8A 1OYLA 3I8RA 4FN6A 1N3UA 1IRMA 1TYHA 1TWRA 1SK7A 3B5PA 3I9TA 3BJDA 1WZFA 3HNHA 4GPCA 1XK3A 1VGIA 4G8UA 1WOWA 2A2MA 2QCXA 3B5OA 3HMLA 1OZLA 1ULXA
chains in the Genus database with same CATH superfamily
3HLXA 3MVUA 1Z72A 3TGMA 3CZYA 1T5PA 1DVEA 1WOXA 2GM7A 1WOVA 1J02A 2QZCA 3OQLA 4MECA 2DY5A 4G7LA 2ZVUA 1OYKA 4WMHA 1UDDA 1WWMA 4G7TA 4WD4A 1XK0A 3MOOA 3NO6A 1V8XA 4LQXA 4WX0A 1WZDA 2A2OA 4G7PA 4NY7A 1IW1A 1UBBA 2Z68A 1YAKA 1XJZA 5BTQA 1XK1A 2Q32A 1TO9A 4G98A 1N45A 2A6BA 3RM5A 1S13A 1RTWA 2RD3A 4WWZA 2RGZA 1IVJA 3HOKA 1OZEA 1IX3A 1NI6A 1S8CA 3I9UA 1OZWA 2F2GA 1TO9B 3K4FA 2QPPA 3IBXA 1WZGA 4G8WA 1YAFA 4G8PA 4G7UA 1WNVA 4GPHA 4WWJA 4GOHA 1P3UA 1OTWA 1OZRA 4GPFA 1J77A 1WNXA 1XK2A 4RAJA 1WE1A 1RCWA 1P3VA 1OTVA 2E7EA 2LCUA 4G99A 1WNWA 1IX4A 1IW0A 1TWNA 1J2CA 3DDEA 1P3TA 1DVGA 2Q4XA 2GM8A 1OYLA 3I8RA 4FN6A 1N3UA 1IRMA 1TYHA 1TWRA 1SK7A 3B5PA 3I9TA 3BJDA 1WZFA 3HNHA 4GPCA 1XK3A 1VGIA 4G8UA 1WOWA 2A2MA 2QCXA 3B5OA 3HMLA 1OZLA 1ULXA
chains in the Genus database with same CATH topology
3HLXA 3MVUA 1Z72A 3TGMA 3CZYA 1T5PA 1DVEA 1WOXA 2GM7A 1WOVA 1J02A 2QZCA 3OQLA 4MECA 2DY5A 4G7LA 2ZVUA 1OYKA 4WMHA 1UDDA 1WWMA 4G7TA 4WD4A 1XK0A 3MOOA 3NO6A 1V8XA 4LQXA 4WX0A 1WZDA 2A2OA 4G7PA 4NY7A 1IW1A 1UBBA 2Z68A 1YAKA 1XJZA 5BTQA 1XK1A 2Q32A 1TO9A 4G98A 1N45A 2A6BA 3RM5A 1S13A 1RTWA 2RD3A 4WWZA 2RGZA 1IVJA 3HOKA 1OZEA 1IX3A 1NI6A 1S8CA 3I9UA 1OZWA 2F2GA 1TO9B 3K4FA 2QPPA 3IBXA 1WZGA 4G8WA 1YAFA 4G8PA 4G7UA 1WNVA 4GPHA 4WWJA 4GOHA 1P3UA 1OTWA 1OZRA 4GPFA 1J77A 1WNXA 1XK2A 4RAJA 1WE1A 1RCWA 1P3VA 1OTVA 2E7EA 4G99A 1WNWA 1IX4A 1IW0A 1TWNA 1J2CA 3DDEA 1P3TA 1DVGA 2Q4XA 2GM8A 1OYLA 3I8RA 4FN6A 1N3UA 1IRMA 1TYHA 1TWRA 1SK7A 3B5PA 3I9TA 3BJDA 1WZFA 3HNHA 4GPCA 1XK3A 1VGIA 4G8UA 1WOWA 2A2MA 2QCXA 3B5OA 3HMLA 1OZLA 1ULXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HLX A;  3MVU A;  1Z72 A;  3TGM A;  3CZY A;  1T5P A;  1DVE A;  1WOX A;  2GM7 A;  1WOV A;  1J02 A;  2QZC A;  3OQL A;  4MEC A;  2DY5 A;  4G7L A;  2ZVU A;  1OYK A;  4WMH A;  1UDD A;  1WWM A;  4G7T A;  4WD4 A;  1XK0 A;  3MOO A;  3NO6 A;  1V8X A;  4LQX A;  4WX0 A;  1WZD A;  2A2O A;  4G7P A;  4NY7 A;  1IW1 A;  1UBB A;  2Z68 A;  1YAK A;  1XJZ A;  5BTQ A;  1XK1 A;  2Q32 A;  1TO9 A;  4G98 A;  1N45 A;  2A6B A;  3RM5 A;  1S13 A;  1RTW A;  2RD3 A;  4WWZ A;  2RGZ A;  1IVJ A;  3HOK A;  1OZE A;  1IX3 A;  1NI6 A;  1S8C A;  3I9U A;  1OZW A;  2F2G A;  1TO9 B;  3K4F A;  2QPP A;  3IBX A;  1WZG A;  4G8W A;  1YAF A;  4G8P A;  4G7U A;  1WNV A;  4GPH A;  4WWJ A;  4GOH A;  1P3U A;  1OTW A;  1OZR A;  4GPF A;  1J77 A;  1WNX A;  1XK2 A;  4RAJ A;  1WE1 A;  1RCW A;  1P3V A;  1OTV A;  2E7E A;  4G99 A;  1WNW A;  1IX4 A;  1IW0 A;  1TWN A;  1J2C A;  3DDE A;  1P3T A;  1DVG A;  2Q4X A;  2GM8 A;  1OYL A;  3I8R A;  4FN6 A;  1N3U A;  1IRM A;  1TYH A;  1TWR A;  1SK7 A;  3B5P A;  3I9T A;  3BJD A;  1WZF A;  3HNH A;  4GPC A;  1XK3 A;  1VGI A;  4G8U A;  1WOW A;  2A2M A;  2QCX A;  3B5O A;  3HML A;  1OZL A;  1ULX A; 
#chains in the Genus database with same CATH topology
 3HLX A;  3MVU A;  1Z72 A;  3TGM A;  3CZY A;  1T5P A;  1DVE A;  1WOX A;  2GM7 A;  1WOV A;  1J02 A;  2QZC A;  3OQL A;  4MEC A;  2DY5 A;  4G7L A;  2ZVU A;  1OYK A;  4WMH A;  1UDD A;  1WWM A;  4G7T A;  4WD4 A;  1XK0 A;  3MOO A;  3NO6 A;  1V8X A;  4LQX A;  4WX0 A;  1WZD A;  2A2O A;  4G7P A;  4NY7 A;  1IW1 A;  1UBB A;  2Z68 A;  1YAK A;  1XJZ A;  5BTQ A;  1XK1 A;  2Q32 A;  1TO9 A;  4G98 A;  1N45 A;  2A6B A;  3RM5 A;  1S13 A;  1RTW A;  2RD3 A;  4WWZ A;  2RGZ A;  1IVJ A;  3HOK A;  1OZE A;  1IX3 A;  1NI6 A;  1S8C A;  3I9U A;  1OZW A;  2F2G A;  1TO9 B;  3K4F A;  2QPP A;  3IBX A;  1WZG A;  4G8W A;  1YAF A;  4G8P A;  4G7U A;  1WNV A;  4GPH A;  4WWJ A;  4GOH A;  1P3U A;  1OTW A;  1OZR A;  4GPF A;  1J77 A;  1WNX A;  1XK2 A;  4RAJ A;  1WE1 A;  1RCW A;  1P3V A;  1OTV A;  2E7E A;  2LCU A;  4G99 A;  1WNW A;  1IX4 A;  1IW0 A;  1TWN A;  1J2C A;  3DDE A;  1P3T A;  1DVG A;  2Q4X A;  2GM8 A;  1OYL A;  3I8R A;  4FN6 A;  1N3U A;  1IRM A;  1TYH A;  1TWR A;  1SK7 A;  3B5P A;  3I9T A;  3BJD A;  1WZF A;  3HNH A;  4GPC A;  1XK3 A;  1VGI A;  4G8U A;  1WOW A;  2A2M A;  2QCX A;  3B5O A;  3HML A;  1OZL A;  1ULX A; 
#chains in the Genus database with same CATH homology
 3HLX A;  3MVU A;  1Z72 A;  3TGM A;  3CZY A;  1T5P A;  1DVE A;  1WOX A;  2GM7 A;  1WOV A;  1J02 A;  2QZC A;  3OQL A;  4MEC A;  2DY5 A;  4G7L A;  2ZVU A;  1OYK A;  4WMH A;  1UDD A;  1WWM A;  4G7T A;  4WD4 A;  1XK0 A;  3MOO A;  3NO6 A;  1V8X A;  4LQX A;  4WX0 A;  1WZD A;  2A2O A;  4G7P A;  4NY7 A;  1IW1 A;  1UBB A;  2Z68 A;  1YAK A;  1XJZ A;  5BTQ A;  1XK1 A;  2Q32 A;  1TO9 A;  4G98 A;  1N45 A;  2A6B A;  3RM5 A;  1S13 A;  1RTW A;  2RD3 A;  4WWZ A;  2RGZ A;  1IVJ A;  3HOK A;  1OZE A;  1IX3 A;  1NI6 A;  1S8C A;  3I9U A;  1OZW A;  2F2G A;  1TO9 B;  3K4F A;  2QPP A;  3IBX A;  1WZG A;  4G8W A;  1YAF A;  4G8P A;  4G7U A;  1WNV A;  4GPH A;  4WWJ A;  4GOH A;  1P3U A;  1OTW A;  1OZR A;  4GPF A;  1J77 A;  1WNX A;  1XK2 A;  4RAJ A;  1WE1 A;  1RCW A;  1P3V A;  1OTV A;  2E7E A;  4G99 A;  1WNW A;  1IX4 A;  1IW0 A;  1TWN A;  1J2C A;  3DDE A;  1P3T A;  1DVG A;  2Q4X A;  2GM8 A;  1OYL A;  3I8R A;  4FN6 A;  1N3U A;  1IRM A;  1TYH A;  1TWR A;  1SK7 A;  3B5P A;  3I9T A;  3BJD A;  1WZF A;  3HNH A;  4GPC A;  1XK3 A;  1VGI A;  4G8U A;  1WOW A;  2A2M A;  2QCX A;  3B5O A;  3HML A;  1OZL A;  1ULX A; 
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