1YZ1A

Crystal structure of human translationally controlled tumour associated protein
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
174
structure length
146
Chain Sequence
b'EFMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Translationally controlled tumor protein
publication title TCTP protects from apoptotic cell death by antagonizing bax function
pubmed doi rcsb
source organism Homo sapiens
molecule tags Unknown function
total genus 43
structure length 146
sequence length 174
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2005-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00838 TCTP Translationally controlled tumour protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.10 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 1yz1A00
3EBMA 3P3KA 1H6QA 1HXRA 2LOYA 1TXJA 2HR9A 1FWQA 2FU5A 1YZ1A 2KWBA 1H7YA
chains in the Genus database with same CATH superfamily
5AMHA 1H6QA 4CI1B 4TZ4C 1TXJA 4CI3B 3HCJA 4A2XA 2QFDA 4A2VA 3HCHA 3EBMA 3P3KA 3ZD6A 5F98A 2YKGA 3OG8A 2KV1A 2LVLA 3WX1A 3EQTA 5F9HA 2FU5A 4V2YA 2RQBA 3GA3A 2K8DA 3CEZA 2RMJA 3HCIA 3LRRA 4CI2B 3LRNA 4TZUA 1HXRA 2QFBA 4V31A 3WX2A 2HR9A 4V30A 1FWQA 3CXKA 1YZ1A 2KWBA 4V2ZA 3ZD7A 3DJMA 4TZCA 2KZNA 3HCGA 2LOYA 1L1DA 3E0MA 3FACA 2W4RA 3NCUA 2RQAA 3E0OA 3MAOA 4BPBA 5F9FA 4AY2A 1H7YA 5E3HA
chains in the Genus database with same CATH topology
1H6QA 1TXJA 4A2XA 2QFDA 4A2VA 3ZD6A 3EBMA 3P3KA 5F98A 3OG8A 2YKGA 3EQTA 2LVLA 5F9HA 2FU5A 2RQBA 3GA3A 2RMJA 3LRRA 3LRNA 1HXRA 2QFBA 3ZD7A 2HR9A 1FWQA 1YZ1A 2KWBA 3DJMA 2LOYA 3FACA 2W4RA 3NCUA 2RQAA 4BPBA 5F9FA 4AY2A 1H7YA 5E3HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EBM A;  3P3K A;  1H6Q A;  1HXR A;  2LOY A;  1TXJ A;  2HR9 A;  1FWQ A;  2FU5 A;  1YZ1 A;  2KWB A;  1H7Y A; 
#chains in the Genus database with same CATH topology
 5AMH A;  1H6Q A;  4CI1 B;  4TZ4 C;  1TXJ A;  4CI3 B;  3HCJ A;  4A2X A;  2QFD A;  4A2V A;  3HCH A;  3EBM A;  3P3K A;  3ZD6 A;  5F98 A;  2YKG A;  3OG8 A;  2KV1 A;  2LVL A;  3WX1 A;  3EQT A;  5F9H A;  2FU5 A;  4V2Y A;  2RQB A;  3GA3 A;  2K8D A;  3CEZ A;  2RMJ A;  3HCI A;  3LRR A;  4CI2 B;  3LRN A;  4TZU A;  1HXR A;  2QFB A;  4V31 A;  3WX2 A;  2HR9 A;  4V30 A;  1FWQ A;  3CXK A;  1YZ1 A;  2KWB A;  4V2Z A;  3ZD7 A;  3DJM A;  4TZC A;  2KZN A;  3HCG A;  2LOY A;  1L1D A;  3E0M A;  3FAC A;  2W4R A;  3NCU A;  2RQA A;  3E0O A;  3MAO A;  4BPB A;  5F9F A;  4AY2 A;  1H7Y A;  5E3H A; 
#chains in the Genus database with same CATH homology
 1H6Q A;  1TXJ A;  4A2X A;  2QFD A;  4A2V A;  3ZD6 A;  3EBM A;  3P3K A;  5F98 A;  3OG8 A;  2YKG A;  3EQT A;  2LVL A;  5F9H A;  2FU5 A;  2RQB A;  3GA3 A;  2RMJ A;  3LRR A;  3LRN A;  1HXR A;  2QFB A;  3ZD7 A;  2HR9 A;  1FWQ A;  1YZ1 A;  2KWB A;  3DJM A;  2LOY A;  3FAC A;  2W4R A;  3NCU A;  2RQA A;  4BPB A;  5F9F A;  4AY2 A;  1H7Y A;  5E3H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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