1H7Y | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	168
structure length	168
Chain Sequence	MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDIGANPSAEDAEENAEEGTETVNNLVYSFRLSPTSFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFFKDGLVSEKF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d29ac80d056fea708a81cb2/pdb.gz): 1459 ms

reading 168 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

168 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 20 ms

Adding embedded #jmolscript: select ({0:167});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Tumor-associated protein
source organism	Schizosaccharomyces pombe
publication title	Structure of TCTP reveals unexpected relationship with guanine nucleotide-free chaperones. pubmed doi rcsb
molecule keywords	TRANSLATIONALLY CONTROLLED TUMOR PROTEIN
total genus	32
structure length	168
sequence length	168
ec nomenclature
pdb deposition date	2001-01-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00838	TCTP	Translationally controlled tumour protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.150.10	Mainly Beta	Beta Complex	Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A	Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A	1h7yA00

2LOYA 2FU5A 1H7YA 1HXRA 3P3KA 2KWBA 1TXJA 2HR9A 1YZ1A 3EBMA 1FWQA 1H6QA
chains in the Genus database with same CATH superfamily

1H7YA 3FACA 3ZD7A 3P3KA 2QFBA 2RQAA 2HR9A 1YZ1A 3EBMA 3LRRA 2KV1A 4TZUA 2LOYA 3HCJA 4V2YA 3LRNA 3CEZA 2W4RA 3HCHA 3HCGA 2LVLA 4TZCA 4A2VA 4V31A 2YKGA 4AY2A 5F98A 3WX1A 3GA3A 2K8DA 1FWQA 1H6QA 3DJMA 3CXKA 3E0OA 5F9HA 4BPBA 4TZ4C 3HCIA 1HXRA 5F9FA 3E0MA 4V30A 2KZNA 2RMJA 4CI1B 4CI3B 3EQTA 2RQBA 4A2XA 1L1DA 3ZD6A 2FU5A 2QFDA 5AMHA 3NCUA 3MAOA 4V2ZA 2KWBA 1TXJA 5E3HA 4CI2B 3OG8A 3WX2A
chains in the Genus database with same CATH topology

1H7YA 3FACA 3ZD7A 3P3KA 2QFBA 2RQAA 2HR9A 1YZ1A 3EBMA 3LRRA 2LOYA 3LRNA 2W4RA 4A2VA 2LVLA 2YKGA 4AY2A 5F98A 3GA3A 1FWQA 1H6QA 3DJMA 5F9HA 4BPBA 5F9FA 1HXRA 2RMJA 3EQTA 2RQBA 4A2XA 3ZD6A 2FU5A 2QFDA 3NCUA 2KWBA 1TXJA 5E3HA 3OG8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2LOY A;  2FU5 A;  1H7Y A;  1HXR A;  3P3K A;  2KWB A;  1TXJ A;  2HR9 A;  1YZ1 A;  3EBM A;  1FWQ A;  1H6Q A; 
#chains in the Genus database with same CATH topology
 1H7Y A;  3FAC A;  3ZD7 A;  3P3K A;  2QFB A;  2RQA A;  2HR9 A;  1YZ1 A;  3EBM A;  3LRR A;  2KV1 A;  4TZU A;  2LOY A;  3HCJ A;  4V2Y A;  3LRN A;  3CEZ A;  2W4R A;  3HCH A;  3HCG A;  2LVL A;  4TZC A;  4A2V A;  4V31 A;  2YKG A;  4AY2 A;  5F98 A;  3WX1 A;  3GA3 A;  2K8D A;  1FWQ A;  1H6Q A;  3DJM A;  3CXK A;  3E0O A;  5F9H A;  4BPB A;  4TZ4 C;  3HCI A;  1HXR A;  5F9F A;  3E0M A;  4V30 A;  2KZN A;  2RMJ A;  4CI1 B;  4CI3 B;  3EQT A;  2RQB A;  4A2X A;  1L1D A;  3ZD6 A;  2FU5 A;  2QFD A;  5AMH A;  3NCU A;  3MAO A;  4V2Z A;  2KWB A;  1TXJ A;  5E3H A;  4CI2 B;  3OG8 A;  3WX2 A; 
#chains in the Genus database with same CATH homology
 1H7Y A;  3FAC A;  3ZD7 A;  3P3K A;  2QFB A;  2RQA A;  2HR9 A;  1YZ1 A;  3EBM A;  3LRR A;  2LOY A;  3LRN A;  2W4R A;  4A2V A;  2LVL A;  2YKG A;  4AY2 A;  5F98 A;  3GA3 A;  1FWQ A;  1H6Q A;  3DJM A;  5F9H A;  4BPB A;  5F9F A;  1HXR A;  2RMJ A;  3EQT A;  2RQB A;  4A2X A;  3ZD6 A;  2FU5 A;  2QFD A;  3NCU A;  2KWB A;  1TXJ A;  5E3H A;  3OG8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1H7YA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations