The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
9
|
sequence length |
134
|
structure length |
134
|
Chain Sequence |
DSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEMSK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Nonself RNA-Sensing Mechanism of RIG-I Helicase and Activation of Antiviral Immune Responses
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Homo sapiens
|
| molecule keywords |
Probable ATP-dependent RNA helicase DDX58
|
| total genus |
9
|
| structure length |
134
|
| sequence length |
134
|
| ec nomenclature |
ec
3.6.4.13: RNA helicase. |
| pdb deposition date | 2007-10-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF11648 | RIG-I_C-RD | C-terminal domain of RIG-I |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Complex | Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A | Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A |
#chains in the Genus database with same CATH superfamily 4AY2 A; 5E3H A; 4BPB A; 2QFD A; 5F98 A; 2QFB A; 3OG8 A; 5F9H A; 2RMJ A; 3LRR A; 3LRN A; 5F9F A; 2YKG A; 3GA3 A; 3EQT A; 2RQA A; 4A2X A; 2W4R A; 2RQB A; 3ZD6 A; 3ZD7 A; 3NCU A; 4A2V A; #chains in the Genus database with same CATH topology 2KV1 A; 3HCJ A; 4TZC A; 4TZU A; 2HR9 A; 2K8D A; 1FWQ A; 3HCI A; 4TZ4 C; 4CI3 B; 3NCU A; 4AY2 A; 4V30 A; 1H7Y A; 4CI1 B; 3E0M A; 3HCG A; 5E3H A; 4BPB A; 2QFD A; 2KWB A; 3FAC A; 3DJM A; 2LVL A; 1TXJ A; 2QFB A; 5F98 A; 3E0O A; 3OG8 A; 4V2Y A; 5F9H A; 3LRN A; 3LRR A; 5F9F A; 4CI2 B; 2YKG A; 3HCH A; 3CXK A; 4V2Z A; 3GA3 A; 1L1D A; 1H6Q A; 3EQT A; 3EBM A; 5AMH A; 2FU5 A; 2LOY A; 2RQA A; 1YZ1 A; 3CEZ A; 4V31 A; 3P3K A; 4A2V A; 4A2X A; 2W4R A; 3WX2 A; 2RQB A; 3ZD6 A; 1HXR A; 2KZN A; 3MAO A; 3ZD7 A; 3WX1 A; 2RMJ A; #chains in the Genus database with same CATH homology 2HR9 A; 1FWQ A; 4AY2 A; 1H7Y A; 5E3H A; 4BPB A; 2QFD A; 2KWB A; 3FAC A; 3DJM A; 2LVL A; 1TXJ A; 2QFB A; 5F98 A; 3OG8 A; 5F9H A; 3LRN A; 3LRR A; 5F9F A; 2YKG A; 3GA3 A; 1H6Q A; 3EQT A; 3EBM A; 2FU5 A; 2LOY A; 2RQA A; 1YZ1 A; 4A2X A; 3P3K A; 4A2V A; 2W4R A; 2RQB A; 3ZD6 A; 1HXR A; 3ZD7 A; 3NCU A; 2RMJ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
