3CJS | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	72
structure length	72
Chain Sequence	MKKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

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Jmol JavaScript applet jmolApplet0__339839967419369__ initializing

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfe8963b6b7516fd2a6a034/pdb.gz): 1635 ms

reading 72 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

72 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 17 ms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Multiple-Site Trimethylation of Ribosomal Protein L11 by the PrmA Methyltransferase. pubmed doi rcsb
molecule keywords	Ribosomal protein L11 methyltransferase
molecule tags	Transferase/ribosomal protein
source organism	Thermus thermophilus
total genus	16
structure length	72
sequence length	72
chains with identical sequence	C
ec nomenclature
pdb deposition date	2008-03-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF03946	Ribosomal_L11_N	Ribosomal protein L11, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1550.10	Alpha Beta	2-Layer Sandwich	Ribosomal protein L11, N-terminal domain	Ribosomal protein L11/L12, N-terminal domain	3cjsB00

2E35A 3J7ZI 3CJRB 3EGVB 2JQ7A 4V19K 2ZJQF 3CJSB 2K3FA 1MMSA 3J7YJ 3CJQB 4UY8I 5GAGJ 2E36A 5DM6F 2NXNB 1WIBA 3CF5F 2E34A 5GAHJ 5DM7F 5GADJ 2H8WA 2ZJPF 3CJTB
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2E35 A;  3J7Z I;  3CJR B;  3EGV B;  2JQ7 A;  4V19 K;  2ZJQ F;  3CJS B;  2K3F A;  1MMS A;  3J7Y J;  3CJQ B;  4UY8 I;  5GAG J;  2E36 A;  5DM6 F;  2NXN B;  1WIB A;  3CF5 F;  2E34 A;  5GAH J;  5DM7 F;  5GAD J;  2H8W A;  2ZJP F;  3CJT B; 
#chains in the Genus database with same CATH topology
 2E35 A;  3J7Z I;  3CJR B;  3EGV B;  2JQ7 A;  4V19 K;  2ZJQ F;  3CJS B;  2K3F A;  1MMS A;  3J7Y J;  3CJQ B;  4UY8 I;  5GAG J;  2E36 A;  5DM6 F;  2NXN B;  1WIB A;  3CF5 F;  2E34 A;  5GAH J;  5DM7 F;  5GAD J;  2H8W A;  2ZJP F;  3CJT B; 
#chains in the Genus database with same CATH homology
 2E35 A;  3J7Z I;  3CJR B;  3EGV B;  2JQ7 A;  4V19 K;  2ZJQ F;  3CJS B;  2K3F A;  1MMS A;  3J7Y J;  3CJQ B;  4UY8 I;  5GAG J;  2E36 A;  5DM6 F;  2NXN B;  1WIB A;  3CF5 F;  2E34 A;  5GAH J;  5DM7 F;  5GAD J;  2H8W A;  2ZJP F;  3CJT B;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

3CJSB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations