3CJS | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	72
structure length	72
Chain Sequence	MKKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

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Jmol JavaScript applet jmolApplet0__0523572631076594__ initializing

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

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Jmol getValue CLICKCallback null

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Jmol getValue IMAGECallback null

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Jmol getValue MEASURECallback null

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfe8963b6b7516fd2a6a034/pdb.gz): 749 ms

reading 72 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

72 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 16 ms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase/ribosomal protein
source organism	Thermus thermophilus
publication title	Multiple-Site Trimethylation of Ribosomal Protein L11 by the PrmA Methyltransferase. pubmed doi rcsb
molecule keywords	Ribosomal protein L11 methyltransferase
total genus	16
structure length	72
sequence length	72
chains with identical sequence	C
ec nomenclature
pdb deposition date	2008-03-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF03946	Ribosomal_L11_N	Ribosomal protein L11, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1550.10	Alpha Beta	2-Layer Sandwich	Ribosomal protein L11, N-terminal domain	Ribosomal protein L11/L12, N-terminal domain	3cjsB00

3CJQB 3CJSB 2H8WA 5DM7F 1MMSA 3CJRB 1WIBA 5DM6F 3CJTB 3CF5F 3EGVB 5GAHJ 2ZJPF 2JQ7A 2K3FA 2NXNB 3J7YJ 2E35A 5GADJ 4UY8I 2ZJQF 3J7ZI 5GAGJ 4V19K 2E34A 2E36A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3CJQ B;  3CJS B;  2H8W A;  5DM7 F;  1MMS A;  3CJR B;  1WIB A;  5DM6 F;  3CJT B;  3CF5 F;  3EGV B;  5GAH J;  2ZJP F;  2JQ7 A;  2K3F A;  2NXN B;  3J7Y J;  2E35 A;  5GAD J;  4UY8 I;  2ZJQ F;  3J7Z I;  5GAG J;  4V19 K;  2E34 A;  2E36 A; 
#chains in the Genus database with same CATH topology
 3CJQ B;  3CJS B;  2H8W A;  5DM7 F;  1MMS A;  3CJR B;  1WIB A;  5DM6 F;  3CJT B;  3CF5 F;  3EGV B;  5GAH J;  2ZJP F;  2JQ7 A;  2K3F A;  2NXN B;  3J7Y J;  2E35 A;  5GAD J;  4UY8 I;  2ZJQ F;  3J7Z I;  5GAG J;  4V19 K;  2E34 A;  2E36 A; 
#chains in the Genus database with same CATH homology
 3CJQ B;  3CJS B;  2H8W A;  5DM7 F;  1MMS A;  3CJR B;  1WIB A;  5DM6 F;  3CJT B;  3CF5 F;  3EGV B;  5GAH J;  2ZJP F;  2JQ7 A;  2K3F A;  2NXN B;  3J7Y J;  2E35 A;  5GAD J;  4UY8 I;  2ZJQ F;  3J7Z I;  5GAG J;  4V19 K;  2E34 A;  2E36 A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

3CJSB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations