3CJSB

Minimal recognition complex between prma and ribosomal protein l11
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
72
structure length
72
Chain Sequence
MKKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Multiple-Site Trimethylation of Ribosomal Protein L11 by the PrmA Methyltransferase.
pubmed doi rcsb
molecule tags Transferase/ribosomal protein
source organism Thermus thermophilus
molecule keywords Ribosomal protein L11 methyltransferase
total genus 16
structure length 72
sequence length 72
chains with identical sequence C
ec nomenclature
pdb deposition date 2008-03-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03946 Ribosomal_L11_N Ribosomal protein L11, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1550.10 Alpha Beta 2-Layer Sandwich Ribosomal protein L11, N-terminal domain Ribosomal protein L11/L12, N-terminal domain 3cjsB00
2K3FA 5DM7F 3CJQB 3CJRB 5GADJ 2JQ7A 4V19K 2ZJQF 2E34A 5GAGJ 2E36A 5DM6F 3J7YJ 2E35A 1WIBA 5GAHJ 4UY8I 2ZJPF 3CF5F 2NXNB 1MMSA 3EGVB 3CJSB 3J7ZI 3CJTB 2H8WA
chains in the Genus database with same CATH superfamily
2K3FA 5DM7F 3CJQB 3CJRB 5GADJ 2JQ7A 4V19K 2ZJQF 2E34A 5GAGJ 2E36A 5DM6F 3J7YJ 2E35A 1WIBA 5GAHJ 4UY8I 2ZJPF 3CF5F 2NXNB 1MMSA 3EGVB 3CJSB 3J7ZI 3CJTB 2H8WA
chains in the Genus database with same CATH topology
2K3FA 5DM7F 3CJQB 3CJRB 5GADJ 2JQ7A 4V19K 2ZJQF 2E34A 5GAGJ 2E36A 5DM6F 3J7YJ 2E35A 1WIBA 5GAHJ 4UY8I 2ZJPF 3CF5F 2NXNB 1MMSA 3EGVB 3CJSB 3J7ZI 3CJTB 2H8WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3F A;  5DM7 F;  3CJQ B;  3CJR B;  5GAD J;  2JQ7 A;  4V19 K;  2ZJQ F;  2E34 A;  5GAG J;  2E36 A;  5DM6 F;  3J7Y J;  2E35 A;  1WIB A;  5GAH J;  4UY8 I;  2ZJP F;  3CF5 F;  2NXN B;  1MMS A;  3EGV B;  3CJS B;  3J7Z I;  3CJT B;  2H8W A; 
#chains in the Genus database with same CATH topology
 2K3F A;  5DM7 F;  3CJQ B;  3CJR B;  5GAD J;  2JQ7 A;  4V19 K;  2ZJQ F;  2E34 A;  5GAG J;  2E36 A;  5DM6 F;  3J7Y J;  2E35 A;  1WIB A;  5GAH J;  4UY8 I;  2ZJP F;  3CF5 F;  2NXN B;  1MMS A;  3EGV B;  3CJS B;  3J7Z I;  3CJT B;  2H8W A; 
#chains in the Genus database with same CATH homology
 2K3F A;  5DM7 F;  3CJQ B;  3CJR B;  5GAD J;  2JQ7 A;  4V19 K;  2ZJQ F;  2E34 A;  5GAG J;  2E36 A;  5DM6 F;  3J7Y J;  2E35 A;  1WIB A;  5GAH J;  4UY8 I;  2ZJP F;  3CF5 F;  2NXN B;  1MMS A;  3EGV B;  3CJS B;  3J7Z I;  3CJT B;  2H8W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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