3EGV | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	77
structure length	77
Chain Sequence	KKVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 77 atoms

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77 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Multiple-site trimethylation of ribosomal protein L11 by the PrmA methyltransferase. pubmed doi rcsb
molecule keywords	Ribosomal protein L11 methyltransferase
molecule tags	Transferase/ribosomal protein
source organism	Thermus thermophilus hb8
total genus	16
structure length	77
sequence length	77
ec nomenclature
pdb deposition date	2008-09-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00298	Ribosomal_L11	Ribosomal protein L11, RNA binding domain
B	PF03946	Ribosomal_L11_N	Ribosomal protein L11, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1550.10	Alpha Beta	2-Layer Sandwich	Ribosomal protein L11, N-terminal domain	Ribosomal protein L11/L12, N-terminal domain	3egvB00

2NXNB 2ZJPF 5GAHJ 2JQ7A 1MMSA 5GAGJ 3EGVB 2H8WA 5DM7F 3CJQB 3CJTB 3J7YJ 3CF5F 3CJSB 3CJRB 5GADJ 2E35A 2E34A 4UY8I 5DM6F 2K3FA 2ZJQF 2E36A 4V19K 3J7ZI 1WIBA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2NXN B;  2ZJP F;  5GAH J;  2JQ7 A;  1MMS A;  5GAG J;  3EGV B;  2H8W A;  5DM7 F;  3CJQ B;  3CJT B;  3J7Y J;  3CF5 F;  3CJS B;  3CJR B;  5GAD J;  2E35 A;  2E34 A;  4UY8 I;  5DM6 F;  2K3F A;  2ZJQ F;  2E36 A;  4V19 K;  3J7Z I;  1WIB A; 
#chains in the Genus database with same CATH topology
 2NXN B;  2ZJP F;  5GAH J;  2JQ7 A;  1MMS A;  5GAG J;  3EGV B;  2H8W A;  5DM7 F;  3CJQ B;  3CJT B;  3J7Y J;  3CF5 F;  3CJS B;  3CJR B;  5GAD J;  2E35 A;  2E34 A;  4UY8 I;  5DM6 F;  2K3F A;  2ZJQ F;  2E36 A;  4V19 K;  3J7Z I;  1WIB A; 
#chains in the Genus database with same CATH homology
 2NXN B;  2ZJP F;  5GAH J;  2JQ7 A;  1MMS A;  5GAG J;  3EGV B;  2H8W A;  5DM7 F;  3CJQ B;  3CJT B;  3J7Y J;  3CF5 F;  3CJS B;  3CJR B;  5GAD J;  2E35 A;  2E34 A;  4UY8 I;  5DM6 F;  2K3F A;  2ZJQ F;  2E36 A;  4V19 K;  3J7Z I;  1WIB A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3EGVB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations