3EQTA

Crystal structure of human lgp2 c-terminal domain in complex with dsrna
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
127
structure length
127
Chain Sequence
QFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVPDFDFLQHCAENL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The RIG-I-like Receptor LGP2 Recognizes the Termini of Double-stranded RNA
pubmed doi rcsb
molecule tags Rna binding protein/rna
source organism Homo sapiens
molecule keywords ATP-dependent RNA helicase DHX58
total genus 26
structure length 127
sequence length 127
chains with identical sequence B
ec nomenclature ec 3.6.4.13: RNA helicase.
pdb deposition date 2008-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11648 RIG-I_C-RD C-terminal domain of RIG-I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.30 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 3eqtA00
3GA3A 5F9HA 3EQTA 2YKGA 2RMJA 2RQAA 4BPBA 3LRNA 5F98A 4AY2A 3OG8A 3LRRA 2W4RA 2QFDA 3NCUA 2QFBA 4A2XA 5F9FA 5E3HA 4A2VA 2RQBA 3ZD7A 3ZD6A
chains in the Genus database with same CATH superfamily
3DJMA 3GA3A 2K8DA 5F9HA 3EQTA 3E0MA 2LOYA 2HR9A 1H6QA 4V2YA 2FU5A 2YKGA 3WX1A 2RMJA 1HXRA 2KZNA 1TXJA 2RQAA 3CXKA 3HCGA 3WX2A 4BPBA 3E0OA 3LRNA 3MAOA 3HCHA 2KWBA 5F98A 4TZCA 4V2ZA 4V30A 2LVLA 5AMHA 4TZ4C 4AY2A 1H7YA 3P3KA 3EBMA 4V31A 1FWQA 3OG8A 1L1DA 2W4RA 2QFDA 3LRRA 3FACA 3CEZA 3NCUA 2QFBA 4A2XA 5F9FA 3ZD6A 4TZUA 4CI1B 5E3HA 3HCJA 1YZ1A 4A2VA 2KV1A 2RQBA 3HCIA 4CI2B 3ZD7A 4CI3B
chains in the Genus database with same CATH topology
3GA3A 5F9HA 3EQTA 2LOYA 3ZD7A 2HR9A 1H6QA 2FU5A 2YKGA 2RMJA 1HXRA 2RQAA 1TXJA 4BPBA 2KWBA 5F98A 2LVLA 4AY2A 1H7YA 3P3KA 3EBMA 3OG8A 1FWQA 3LRRA 2W4RA 2QFDA 3FACA 3NCUA 2QFBA 4A2XA 5F9FA 3ZD6A 5E3HA 1YZ1A 4A2VA 3DJMA 2RQBA 3LRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GA3 A;  5F9H A;  3EQT A;  2YKG A;  2RMJ A;  2RQA A;  4BPB A;  3LRN A;  5F98 A;  4AY2 A;  3OG8 A;  3LRR A;  2W4R A;  2QFD A;  3NCU A;  2QFB A;  4A2X A;  5F9F A;  5E3H A;  4A2V A;  2RQB A;  3ZD7 A;  3ZD6 A; 
#chains in the Genus database with same CATH topology
 3DJM A;  3GA3 A;  2K8D A;  5F9H A;  3EQT A;  3E0M A;  2LOY A;  2HR9 A;  1H6Q A;  4V2Y A;  2FU5 A;  2YKG A;  3WX1 A;  2RMJ A;  1HXR A;  2KZN A;  1TXJ A;  2RQA A;  3CXK A;  3HCG A;  3WX2 A;  4BPB A;  3E0O A;  3LRN A;  3MAO A;  3HCH A;  2KWB A;  5F98 A;  4TZC A;  4V2Z A;  4V30 A;  2LVL A;  5AMH A;  4TZ4 C;  4AY2 A;  1H7Y A;  3P3K A;  3EBM A;  4V31 A;  1FWQ A;  3OG8 A;  1L1D A;  2W4R A;  2QFD A;  3LRR A;  3FAC A;  3CEZ A;  3NCU A;  2QFB A;  4A2X A;  5F9F A;  3ZD6 A;  4TZU A;  4CI1 B;  5E3H A;  3HCJ A;  1YZ1 A;  4A2V A;  2KV1 A;  2RQB A;  3HCI A;  4CI2 B;  3ZD7 A;  4CI3 B; 
#chains in the Genus database with same CATH homology
 3GA3 A;  5F9H A;  3EQT A;  2LOY A;  3ZD7 A;  2HR9 A;  1H6Q A;  2FU5 A;  2YKG A;  2RMJ A;  1HXR A;  2RQA A;  1TXJ A;  4BPB A;  2KWB A;  5F98 A;  2LVL A;  4AY2 A;  1H7Y A;  3P3K A;  3EBM A;  3OG8 A;  1FWQ A;  3LRR A;  2W4R A;  2QFD A;  3FAC A;  3NCU A;  2QFB A;  4A2X A;  5F9F A;  3ZD6 A;  5E3H A;  1YZ1 A;  4A2V A;  3DJM A;  2RQB A;  3LRN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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