The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
91
|
sequence length |
207
|
structure length |
207
|
Chain Sequence |
GLAVELKQSTAQAHEKAEHSTFMSDLLKGRLGVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRSRITASPAVIDYVNRLEEIRDNVDGPALVAHHYVRYLGDLSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNLELSDEQREHLLKEATDAFVFNHQVFADLGK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Enzymatic ring-opening mechanism of verdoheme by the heme oxygenase: a combined X-ray crystallography and QM/MM study.
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Corynebacterium diphtheriae
|
| molecule keywords |
Heme oxygenase
|
| total genus |
91
|
| structure length |
207
|
| sequence length |
207
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2010-04-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01126 | Heme_oxygenase | Heme oxygenase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Heme Oxygenase; Chain A | Heme oxygenase-like |
#chains in the Genus database with same CATH superfamily 1VGI A; 1DVE A; 4RAJ A; 1WNV A; 1RCW A; 3K4F A; 4WMH A; 1S13 A; 4GOH A; 1WOW A; 4WD4 A; 3MVU A; 1XK3 A; 1WOV A; 2Q4X A; 4LQX A; 1OZR A; 1OYK A; 1N3U A; 3I9U A; 3MOO A; 1IW0 A; 1OTW A; 2A2O A; 1WWM A; 4G7L A; 2RD3 A; 1P3U A; 2Q32 A; 2QPP A; 4G7P A; 1J2C A; 4G7T A; 3DDE A; 1OTV A; 1WZG A; 1TWN A; 3HLX A; 1IX4 A; 2Z68 A; 1P3T A; 2QCX A; 5BTQ A; 1ULX A; 1J02 A; 1RTW A; 1V8X A; 1S8C A; 1WZD A; 2A6B A; 3I8R A; 4GPC A; 4G98 A; 1OZW A; 4WWJ A; 1Z72 A; 1P3V A; 3I9T A; 1XJZ A; 1IW1 A; 1WOX A; 4MEC A; 1IX3 A; 1SK7 A; 3BJD A; 4G8U A; 4G99 A; 4G8P A; 4G8W A; 2F2G A; 2GM8 A; 1OYL A; 1XK0 A; 1N45 A; 1TO9 A; 1NI6 A; 1TYH A; 3RM5 A; 4WWZ A; 1XK1 A; 1TWR A; 2GM7 A; 1J77 A; 3IBX A; 4G7U A; 1IVJ A; 1WNX A; 1UDD A; 2QZC A; 1YAF A; 4GPH A; 1WNW A; 3B5O A; 3B5P A; 4GPF A; 1WE1 A; 3OQL A; 4FN6 A; 1WZF A; 4WX0 A; 4NY7 A; 3HNH A; 3TGM A; 1IRM A; 2ZVU A; 2DY5 A; 1OZL A; 1TO9 B; 3CZY A; 1T5P A; 1XK2 A; 3HML A; 3NO6 A; 1UBB A; 1DVG A; 1OZE A; 2A2M A; 2RGZ A; 1YAK A; 2E7E A; 3HOK A; #chains in the Genus database with same CATH topology 1VGI A; 1DVE A; 4RAJ A; 1WNV A; 1RCW A; 3K4F A; 4WMH A; 1S13 A; 4GOH A; 1WOW A; 4WD4 A; 3MVU A; 1XK3 A; 1WOV A; 2LCU A; 2Q4X A; 4LQX A; 1OZR A; 1OYK A; 1N3U A; 3I9U A; 3MOO A; 1IW0 A; 1OTW A; 2A2O A; 1WWM A; 4G7L A; 2RD3 A; 1P3U A; 2Q32 A; 2QPP A; 4G7P A; 1J2C A; 4G7T A; 3DDE A; 1OTV A; 1WZG A; 1TWN A; 3HLX A; 1IX4 A; 2Z68 A; 1P3T A; 2QCX A; 5BTQ A; 1ULX A; 1J02 A; 1RTW A; 1V8X A; 1S8C A; 1WZD A; 2A6B A; 3I8R A; 4GPC A; 4G98 A; 1OZW A; 4WWJ A; 1Z72 A; 1P3V A; 3I9T A; 1XJZ A; 1IW1 A; 1WOX A; 4MEC A; 1IX3 A; 1SK7 A; 3BJD A; 4G8U A; 4G99 A; 4G8P A; 4G8W A; 2F2G A; 2GM8 A; 1OYL A; 1XK0 A; 1N45 A; 1TO9 A; 1NI6 A; 1TYH A; 3RM5 A; 4WWZ A; 1XK1 A; 1TWR A; 2GM7 A; 1J77 A; 3IBX A; 4G7U A; 1IVJ A; 1WNX A; 1UDD A; 2QZC A; 1YAF A; 4GPH A; 1WNW A; 3B5O A; 3B5P A; 4GPF A; 1WE1 A; 3OQL A; 4FN6 A; 1WZF A; 4WX0 A; 4NY7 A; 3HNH A; 3TGM A; 1IRM A; 2ZVU A; 2DY5 A; 1OZL A; 1TO9 B; 3CZY A; 1T5P A; 1XK2 A; 3HML A; 3NO6 A; 1UBB A; 1DVG A; 1OZE A; 2A2M A; 2RGZ A; 1YAK A; 2E7E A; 3HOK A; #chains in the Genus database with same CATH homology 1VGI A; 1DVE A; 4RAJ A; 1WNV A; 1RCW A; 3K4F A; 4WMH A; 1S13 A; 4GOH A; 1WOW A; 4WD4 A; 3MVU A; 1XK3 A; 1WOV A; 2Q4X A; 4LQX A; 1OZR A; 1OYK A; 1N3U A; 3I9U A; 3MOO A; 1IW0 A; 1OTW A; 2A2O A; 1WWM A; 4G7L A; 2RD3 A; 1P3U A; 2Q32 A; 2QPP A; 4G7P A; 1J2C A; 4G7T A; 3DDE A; 1OTV A; 1WZG A; 1TWN A; 3HLX A; 1IX4 A; 2Z68 A; 1P3T A; 2QCX A; 5BTQ A; 1ULX A; 1J02 A; 1RTW A; 1V8X A; 1S8C A; 1WZD A; 2A6B A; 3I8R A; 4GPC A; 4G98 A; 1OZW A; 4WWJ A; 1Z72 A; 1P3V A; 3I9T A; 1XJZ A; 1IW1 A; 1WOX A; 4MEC A; 1IX3 A; 1SK7 A; 3BJD A; 4G8U A; 4G99 A; 4G8P A; 4G8W A; 2F2G A; 2GM8 A; 1OYL A; 1XK0 A; 1N45 A; 1TO9 A; 1NI6 A; 1TYH A; 3RM5 A; 4WWZ A; 1XK1 A; 1TWR A; 2GM7 A; 1J77 A; 3IBX A; 4G7U A; 1IVJ A; 1WNX A; 1UDD A; 2QZC A; 1YAF A; 4GPH A; 1WNW A; 3B5O A; 3B5P A; 4GPF A; 1WE1 A; 3OQL A; 4FN6 A; 1WZF A; 4WX0 A; 4NY7 A; 3HNH A; 3TGM A; 1IRM A; 2ZVU A; 2DY5 A; 1OZL A; 1TO9 B; 3CZY A; 1T5P A; 1XK2 A; 3HML A; 3NO6 A; 1UBB A; 1DVG A; 1OZE A; 2A2M A; 2RGZ A; 1YAK A; 2E7E A; 3HOK A;
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