The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
91
|
sequence length |
225
|
structure length |
225
|
Chain Sequence |
MSEPYGKAFSLMRAEAEPAWRAYTHHAFVEGLKAGTLPREAFLHYLQQDYVFLIHFSRAWALAVVKSETHSEMLAAVGTVNALVAEEMQLHIGICEASGISQEALFATRERAENLAYTRFVLEAGYSGDLLDLLAALAPCVMGYGEIGKRLTAEATSTLYGDWIDTYGGDDYQAACKAVGTLLDDALERRLGAEFTSSPRWSRLCQTFHTATELEVGFWQMGLTP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of a TenA family transcription regulator (TM1040_3656) from SILICIBACTER SP. TM1040 at 1.80 A resolution
rcsb |
| molecule tags |
Transcription regulator
|
| source organism |
Ruegeria sp. tm1040
|
| molecule keywords |
TenA family transcriptional regulator
|
| total genus |
91
|
| structure length |
225
|
| sequence length |
225
|
| ec nomenclature | |
| pdb deposition date | 2010-05-04 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03070 | TENA_THI-4 | TENA/THI-4/PQQC family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Heme Oxygenase; Chain A | Heme oxygenase-like |
#chains in the Genus database with same CATH superfamily 1WWM A; 1OZR A; 1UDD A; 3RM5 A; 1DVE A; 1OZL A; 1OZW A; 1IW1 A; 3I8R A; 1XJZ A; 1WNX A; 3BJD A; 3MOO A; 4G98 A; 1UBB A; 4RAJ A; 4G7L A; 4WWJ A; 1IX4 A; 1SK7 A; 2Q32 A; 2F2G A; 1OTV A; 1TWN A; 3CZY A; 4WWZ A; 1OZE A; 1IW0 A; 1WOV A; 1P3U A; 1TO9 A; 2QCX A; 1OTW A; 1S13 A; 4G99 A; 1WOW A; 1WZG A; 1IVJ A; 1WZF A; 3HML A; 1IX3 A; 1N3U A; 1S8C A; 1ULX A; 4GOH A; 3HOK A; 2ZVU A; 1J02 A; 3HLX A; 4G8P A; 1J2C A; 2RGZ A; 1WNV A; 1WOX A; 1RTW A; 3DDE A; 4LQX A; 2E7E A; 4WX0 A; 4GPF A; 1YAK A; 1TYH A; 4GPH A; 1J77 A; 4GPC A; 1OYL A; 3TGM A; 2A6B A; 2DY5 A; 4G7U A; 4NY7 A; 3B5O A; 2GM8 A; 1WNW A; 1P3V A; 1RCW A; 4G7P A; 1YAF A; 2QZC A; 3I9T A; 4MEC A; 1XK2 A; 2Q4X A; 1Z72 A; 1WZD A; 2GM7 A; 1XK0 A; 3NO6 A; 3IBX A; 2A2M A; 4G8W A; 5BTQ A; 1XK1 A; 3K4F A; 1TWR A; 3OQL A; 3I9U A; 3B5P A; 4FN6 A; 1P3T A; 1NI6 A; 1TO9 B; 2A2O A; 4G8U A; 4G7T A; 3HNH A; 1IRM A; 1OYK A; 1N45 A; 1V8X A; 2RD3 A; 3MVU A; 1VGI A; 2QPP A; 4WD4 A; 1DVG A; 1XK3 A; 4WMH A; 1T5P A; 2Z68 A; 1WE1 A; #chains in the Genus database with same CATH topology 1WWM A; 1OZR A; 1UDD A; 3RM5 A; 1DVE A; 1OZL A; 1OZW A; 1IW1 A; 3I8R A; 1XJZ A; 1WNX A; 3BJD A; 3MOO A; 4G98 A; 1UBB A; 4RAJ A; 4G7L A; 4WWJ A; 1IX4 A; 1SK7 A; 2Q32 A; 2F2G A; 1OTV A; 1TWN A; 3CZY A; 4WWZ A; 1OZE A; 1IW0 A; 1WOV A; 1P3U A; 1TO9 A; 2QCX A; 1OTW A; 1S13 A; 4G99 A; 1WOW A; 1WZG A; 1IVJ A; 1WZF A; 3HML A; 1IX3 A; 1N3U A; 1S8C A; 1ULX A; 4GOH A; 3HOK A; 2ZVU A; 1J02 A; 3HLX A; 4G8P A; 1J2C A; 2RGZ A; 1WNV A; 1WOX A; 1RTW A; 3DDE A; 4LQX A; 2E7E A; 4WX0 A; 4GPF A; 1YAK A; 1TYH A; 4GPH A; 1J77 A; 4GPC A; 1OYL A; 3TGM A; 2A6B A; 2DY5 A; 4G7U A; 4NY7 A; 3B5O A; 2GM8 A; 1WNW A; 1P3V A; 1RCW A; 4G7P A; 2LCU A; 1YAF A; 2QZC A; 3I9T A; 4MEC A; 1XK2 A; 2Q4X A; 1Z72 A; 1WZD A; 2GM7 A; 1XK0 A; 3NO6 A; 3IBX A; 2A2M A; 4G8W A; 5BTQ A; 1XK1 A; 3K4F A; 1TWR A; 3OQL A; 3I9U A; 3B5P A; 4FN6 A; 1P3T A; 1NI6 A; 1TO9 B; 2A2O A; 4G8U A; 4G7T A; 3HNH A; 1IRM A; 1OYK A; 1N45 A; 1V8X A; 2RD3 A; 3MVU A; 1VGI A; 2QPP A; 4WD4 A; 1DVG A; 1XK3 A; 4WMH A; 1T5P A; 2Z68 A; 1WE1 A; #chains in the Genus database with same CATH homology 1WWM A; 1OZR A; 1UDD A; 3RM5 A; 1DVE A; 1OZL A; 1OZW A; 1IW1 A; 3I8R A; 1XJZ A; 1WNX A; 3BJD A; 3MOO A; 4G98 A; 1UBB A; 4RAJ A; 4G7L A; 4WWJ A; 1IX4 A; 1SK7 A; 2Q32 A; 2F2G A; 1OTV A; 1TWN A; 3CZY A; 4WWZ A; 1OZE A; 1IW0 A; 1WOV A; 1P3U A; 1TO9 A; 2QCX A; 1OTW A; 1S13 A; 4G99 A; 1WOW A; 1WZG A; 1IVJ A; 1WZF A; 3HML A; 1IX3 A; 1N3U A; 1S8C A; 1ULX A; 4GOH A; 3HOK A; 2ZVU A; 1J02 A; 3HLX A; 4G8P A; 1J2C A; 2RGZ A; 1WNV A; 1WOX A; 1RTW A; 3DDE A; 4LQX A; 2E7E A; 4WX0 A; 4GPF A; 1YAK A; 1TYH A; 4GPH A; 1J77 A; 4GPC A; 1OYL A; 3TGM A; 2A6B A; 2DY5 A; 4G7U A; 4NY7 A; 3B5O A; 2GM8 A; 1WNW A; 1P3V A; 1RCW A; 4G7P A; 1YAF A; 2QZC A; 3I9T A; 4MEC A; 1XK2 A; 2Q4X A; 1Z72 A; 1WZD A; 2GM7 A; 1XK0 A; 3NO6 A; 3IBX A; 2A2M A; 4G8W A; 5BTQ A; 1XK1 A; 3K4F A; 1TWR A; 3OQL A; 3I9U A; 3B5P A; 4FN6 A; 1P3T A; 1NI6 A; 1TO9 B; 2A2O A; 4G8U A; 4G7T A; 3HNH A; 1IRM A; 1OYK A; 1N45 A; 1V8X A; 2RD3 A; 3MVU A; 1VGI A; 2QPP A; 4WD4 A; 1DVG A; 1XK3 A; 4WMH A; 1T5P A; 2Z68 A; 1WE1 A;
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