1JCUA

Solution structure of mth1692 protein from methanobacterium thermoautotrophicum
Total Genus 28
204060801001201401601802000510152025
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
208
structure length
208
Chain Sequence
MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSRPSGDAMELMERILPGPYTVVLERNELIPDVITGGSSRVGIRVPDDEICRRIAARFPVTATSANISGKPPSPRLEEIVRDLDAVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGPLDPVLLRGAGDV
2040608010012014016018020020015010050
0510152025Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (28-30)TIV8 (159-162)S2 (39-42)TIV1 (32-35)TIV2 (33-36)EMPTYS7 (136-138)TI1 (42-45)AH2 (46-56)TIV3 (59-62)TIV7 (111-114)TI2 (107-110)S3 (66-67)S6 (116-120)3H1 (71-73)TIV4 (74-77)S4 (78-79)AH3 (82-91)S9 (177-182)S5 (96-102)TI3 (108-111)TIV6 (109-112)AH5 (152-158)O1 (195-197)S8 (163-164)AH1 (14-25)S10 (187-192)AH4 (125-133)Updating...
connected with : NaN
publication title An NMR approach to structural proteomics.
pubmed doi rcsb
molecule tags Structural genomics
source organism Methanothermobacter thermautotrophicus
molecule keywords conserved protein MTH1692
total genus 28
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2001-06-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01300 Sua5_yciO_yrdC Telomere recombination
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.870.10 Alpha Beta Alpha-Beta Complex DHBP synthase DHBP synthase 1jcuA00
1G57A 4E1BA 1K4IA 4P6PA 3AJEA 2EQAA 1G58A 1K49A 1IEZA 3LRJA 3LS6A 1SNNA 1HRUA 1PVWA 1TKSA 1K4OA 1K4PA 3MIOA 3LQUA 1PVYA 1TKUA 2RISA 1JCUA 2MX1A 4P8JA 4P6DA 4I14A 4P8EA 1KK9A 3H07A 4P6CA 1K7JA 2RIUA 3MK5A 3MGZA 4P77A 1K4LA 3L7VA 4FFJA
chains in the Genus database with same CATH superfamily
1G57A 4E1BA 1K4IA 4P6PA 3TTCA 3VEOA 3VEXA 3AJEA 3TSPA 3VTIA 2EQAA 3VF2A 3TTDA 3VETA 1G58A 3TSQA 1K49A 1IEZA 3LRJA 3LS6A 3TTFA 3VERA 1SNNA 1HRUA 1PVWA 1TKSA 3VEZA 1K4OA 1K4PA 3MIOA 3LQUA 1PVYA 1TKUA 2RISA 3VEWA 2MX1A 1JCUA 4P8JA 4P6DA 3VTHA 4I14A 4P8EA 1KK9A 3TSUA 3H07A 4P6CA 1K7JA 2RIUA 3MK5A 3VF4A 3MGZA 4P77A 3VESA 1K4LA 3VENA 3L7VA 4FFJA
chains in the Genus database with same CATH topology
1G57A 4E1BA 1K4IA 4P6PA 3TTCA 3VEOA 3VEXA 3AJEA 3TSPA 3VTIA 2EQAA 3VF2A 3TTDA 3VETA 1G58A 3TSQA 1K49A 1IEZA 3LRJA 3LS6A 3TTFA 3VERA 1SNNA 1HRUA 1PVWA 1TKSA 3VEZA 1K4OA 1K4PA 3MIOA 3LQUA 1PVYA 1TKUA 2RISA 3VEWA 2MX1A 1JCUA 4P8JA 4P6DA 3VTHA 4I14A 4P8EA 1KK9A 3TSUA 3H07A 4P6CA 1K7JA 2RIUA 3MK5A 3VF4A 3MGZA 4P77A 3VESA 1K4LA 3VENA 3L7VA 4FFJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G57 A;  4E1B A;  1K4I A;  4P6P A;  3AJE A;  2EQA A;  1G58 A;  1K49 A;  1IEZ A;  3LRJ A;  3LS6 A;  1SNN A;  1HRU A;  1PVW A;  1TKS A;  1K4O A;  1K4P A;  3MIO A;  3LQU A;  1PVY A;  1TKU A;  2RIS A;  1JCU A;  2MX1 A;  4P8J A;  4P6D A;  4I14 A;  4P8E A;  1KK9 A;  3H07 A;  4P6C A;  1K7J A;  2RIU A;  3MK5 A;  3MGZ A;  4P77 A;  1K4L A;  3L7V A;  4FFJ A; 
#chains in the Genus database with same CATH topology
 1G57 A;  4E1B A;  1K4I A;  4P6P A;  3TTC A;  3VEO A;  3VEX A;  3AJE A;  3TSP A;  3VTI A;  2EQA A;  3VF2 A;  3TTD A;  3VET A;  1G58 A;  3TSQ A;  1K49 A;  1IEZ A;  3LRJ A;  3LS6 A;  3TTF A;  3VER A;  1SNN A;  1HRU A;  1PVW A;  1TKS A;  3VEZ A;  1K4O A;  1K4P A;  3MIO A;  3LQU A;  1PVY A;  1TKU A;  2RIS A;  3VEW A;  2MX1 A;  1JCU A;  4P8J A;  4P6D A;  3VTH A;  4I14 A;  4P8E A;  1KK9 A;  3TSU A;  3H07 A;  4P6C A;  1K7J A;  2RIU A;  3MK5 A;  3VF4 A;  3MGZ A;  4P77 A;  3VES A;  1K4L A;  3VEN A;  3L7V A;  4FFJ A; 
#chains in the Genus database with same CATH homology
 1G57 A;  4E1B A;  1K4I A;  4P6P A;  3TTC A;  3VEO A;  3VEX A;  3AJE A;  3TSP A;  3VTI A;  2EQA A;  3VF2 A;  3TTD A;  3VET A;  1G58 A;  3TSQ A;  1K49 A;  1IEZ A;  3LRJ A;  3LS6 A;  3TTF A;  3VER A;  1SNN A;  1HRU A;  1PVW A;  1TKS A;  3VEZ A;  1K4O A;  1K4P A;  3MIO A;  3LQU A;  1PVY A;  1TKU A;  2RIS A;  3VEW A;  2MX1 A;  1JCU A;  4P8J A;  4P6D A;  3VTH A;  4I14 A;  4P8E A;  1KK9 A;  3TSU A;  3H07 A;  4P6C A;  1K7J A;  2RIU A;  3MK5 A;  3VF4 A;  3MGZ A;  4P77 A;  3VES A;  1K4L A;  3VEN A;  3L7V A;  4FFJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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