1IEZ | Genus

Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	217
structure length	217
Chain Sequence	MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 217 atoms

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217 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Isomerase
source organism	Escherichia coli
publication title	The NMR structure of the 47-kDa dimeric enzyme 3,4-dihydroxy-2-butanone-4-phosphate synthase and ligand binding studies reveal the location of the active site. pubmed doi rcsb
molecule keywords	3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase
total genus	30
structure length	217
sequence length	217
ec nomenclature	ec 4.1.99.12: 3,4-dihydroxy-2-butanone-4-phosphate synthase.
pdb deposition date	2001-04-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00926	DHBP_synthase	3,4-dihydroxy-2-butanone 4-phosphate synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.870.10	Alpha Beta	Alpha-Beta Complex	DHBP synthase	DHBP synthase	1iezA00

1K7JA 4P8EA 3LS6A 1PVYA 1K49A 3AJEA 4P77A 2EQAA 2RIUA 1G57A 3H07A 1TKSA 4FFJA 1HRUA 3MK5A 1TKUA 3LRJA 4P6DA 3MGZA 1PVWA 4P6CA 1K4IA 4P6PA 1G58A 1SNNA 4E1BA 1IEZA 3LQUA 2MX1A 4P8JA 1JCUA 1KK9A 1K4LA 3MIOA 3L7VA 1K4PA 4I14A 2RISA 1K4OA
chains in the Genus database with same CATH superfamily

1K7JA 4P8EA 3TTFA 3VEZA 3LS6A 3VTIA 1PVYA 3VEXA 1K49A 3AJEA 3VERA 4P77A 3VESA 2EQAA 2RIUA 1G57A 3H07A 1TKSA 4FFJA 1HRUA 3MK5A 3VENA 1TKUA 3LRJA 4P6DA 3MGZA 3TTDA 3VTHA 1PVWA 4P6CA 1K4IA 4P6PA 3TSUA 3VF2A 1G58A 1SNNA 3VEWA 3VF4A 4E1BA 1IEZA 3LQUA 3VEOA 2MX1A 4P8JA 1JCUA 1KK9A 1K4LA 3TSQA 3MIOA 3TSPA 3L7VA 1K4PA 4I14A 2RISA 3VETA 1K4OA 3TTCA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1K7J A;  4P8E A;  3LS6 A;  1PVY A;  1K49 A;  3AJE A;  4P77 A;  2EQA A;  2RIU A;  1G57 A;  3H07 A;  1TKS A;  4FFJ A;  1HRU A;  3MK5 A;  1TKU A;  3LRJ A;  4P6D A;  3MGZ A;  1PVW A;  4P6C A;  1K4I A;  4P6P A;  1G58 A;  1SNN A;  4E1B A;  1IEZ A;  3LQU A;  2MX1 A;  4P8J A;  1JCU A;  1KK9 A;  1K4L A;  3MIO A;  3L7V A;  1K4P A;  4I14 A;  2RIS A;  1K4O A; 
#chains in the Genus database with same CATH topology
 1K7J A;  4P8E A;  3TTF A;  3VEZ A;  3LS6 A;  3VTI A;  1PVY A;  3VEX A;  1K49 A;  3AJE A;  3VER A;  4P77 A;  3VES A;  2EQA A;  2RIU A;  1G57 A;  3H07 A;  1TKS A;  4FFJ A;  1HRU A;  3MK5 A;  3VEN A;  1TKU A;  3LRJ A;  4P6D A;  3MGZ A;  3TTD A;  3VTH A;  1PVW A;  4P6C A;  1K4I A;  4P6P A;  3TSU A;  3VF2 A;  1G58 A;  1SNN A;  3VEW A;  3VF4 A;  4E1B A;  1IEZ A;  3LQU A;  3VEO A;  2MX1 A;  4P8J A;  1JCU A;  1KK9 A;  1K4L A;  3TSQ A;  3MIO A;  3TSP A;  3L7V A;  1K4P A;  4I14 A;  2RIS A;  3VET A;  1K4O A;  3TTC A; 
#chains in the Genus database with same CATH homology
 1K7J A;  4P8E A;  3TTF A;  3VEZ A;  3LS6 A;  3VTI A;  1PVY A;  3VEX A;  1K49 A;  3AJE A;  3VER A;  4P77 A;  3VES A;  2EQA A;  2RIU A;  1G57 A;  3H07 A;  1TKS A;  4FFJ A;  1HRU A;  3MK5 A;  3VEN A;  1TKU A;  3LRJ A;  4P6D A;  3MGZ A;  3TTD A;  3VTH A;  1PVW A;  4P6C A;  1K4I A;  4P6P A;  3TSU A;  3VF2 A;  1G58 A;  1SNN A;  3VEW A;  3VF4 A;  4E1B A;  1IEZ A;  3LQU A;  3VEO A;  2MX1 A;  4P8J A;  1JCU A;  1KK9 A;  1K4L A;  3TSQ A;  3MIO A;  3TSP A;  3L7V A;  1K4P A;  4I14 A;  2RIS A;  3VET A;  1K4O A;  3TTC A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1IEZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations