2XQHA

Crystal structure of an immunoglobulin-binding fragment of the trimeric autotransporter adhesin eibd
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
258
structure length
258
Chain Sequence
SDAKASGEFSVAVGNGARATEKASTAVGSWAAADGKQSTALGVGTYAYANASTALGSVAFVDNTATYGTAAGNRAKVDKDATEGTALGAKATVTNKNSVALGANSVTTRDNEVYIGYKTGTESDKTYGTRVLGGLSDGTRNSDAATVGQLNRKVGGVYDDVKARITVESEKQKKYTDQKTSEVNEKVEARTTVGVDSDGKLTRAEGATKTIAVNDGLVALSGRTDRIDYAVGAIDGRVTRNTQSIEKNSKAIAANTRT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords IMMUNOGLOBULIN-BINDING PROTEIN EIBD
publication title The Structure of E. Coli Igg-Binding Protein D Suggests a General Model for Bending and Binding in Trimeric Autotransporter Adhesins.
pubmed doi rcsb
source organism Escherichia coli
total genus 93
structure length 258
sequence length 258
ec nomenclature
pdb deposition date 2010-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05658 YadA_head Head domain of trimeric autotransporter adhesin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 2xqhA01
2ZJ7A 3HBUP 3A70A 3LA9A 5CXLA 1O0TA 2YO1A 1SMPA 3NTNA 5D7WA 2ZVDA 3U1RA 1JIWP 1SRPA 2QUBA 3WP8A 1G9KA 3HB2P 1OM7A 1SATA 2QUAA 1K7GA 3HDAP 1KAPP 1GO7P 1OM8A 5CVWA 3S6LA 2Z8XA 2AGMA 3VI1A 2ZJ6A 2XQHA 1GO8P 2YO0A 2Z8ZA 1AKLA 1OMJA 1P9HA 1H71P 1K7IA 1AF0A 2ML2A 3ULTA 4I35A 1K7QA 1OM6A 3A6ZA 1O0QA 3HBVP 3LAAA
chains in the Genus database with same CATH superfamily
2ZJ7A 3HBUP 3A70A 3LA9A 4DT5A 5CXLA 1O0TA 2YO1A 1SMPA 3NTNA 5D7WA 2ZVDA 3U1RA 1JIWP 1SRPA 2QUBA 3WP8A 1G9KA 3HB2P 1OM7A 1SATA 2QUAA 1K7GA 3HDAP 1KAPP 1GO7P 1OM8A 5CVWA 3S6LA 2Z8XA 2AGMA 3VI1A 2ZJ6A 2XQHA 1GO8P 2YO0A 2Z8ZA 1AKLA 1OMJA 1P9HA 1H71P 1K7IA 1AF0A 2ML2A 3ULTA 4I35A 1K7QA 1OM6A 3A6ZA 1O0QA 3HBVP 3LAAA
chains in the Genus database with same CATH topology
2ZJ7A 3HBUP 3A70A 3LA9A 5CXLA 1O0TA 2YO1A 1SMPA 3NTNA 5D7WA 2ZVDA 3U1RA 1JIWP 1SRPA 2QUBA 3WP8A 1G9KA 3HB2P 1OM7A 1SATA 2QUAA 1K7GA 3HDAP 1KAPP 1GO7P 1OM8A 5CVWA 3S6LA 2Z8XA 2AGMA 3VI1A 2ZJ6A 2XQHA 1GO8P 2YO0A 2Z8ZA 1AKLA 1OMJA 1P9HA 1H71P 1K7IA 1AF0A 2ML2A 3ULTA 4I35A 1K7QA 1OM6A 3A6ZA 1O0QA 3HBVP 3LAAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZJ7 A;  3HBU P;  3A70 A;  3LA9 A;  5CXL A;  1O0T A;  2YO1 A;  1SMP A;  3NTN A;  5D7W A;  2ZVD A;  3U1R A;  1JIW P;  1SRP A;  2QUB A;  3WP8 A;  1G9K A;  3HB2 P;  1OM7 A;  1SAT A;  2QUA A;  1K7G A;  3HDA P;  1KAP P;  1GO7 P;  1OM8 A;  5CVW A;  3S6L A;  2Z8X A;  2AGM A;  3VI1 A;  2ZJ6 A;  2XQH A;  1GO8 P;  2YO0 A;  2Z8Z A;  1AKL A;  1OMJ A;  1P9H A;  1H71 P;  1K7I A;  1AF0 A;  2ML2 A;  3ULT A;  4I35 A;  1K7Q A;  1OM6 A;  3A6Z A;  1O0Q A;  3HBV P;  3LAA A; 
#chains in the Genus database with same CATH topology
 2ZJ7 A;  3HBU P;  3A70 A;  3LA9 A;  4DT5 A;  5CXL A;  1O0T A;  2YO1 A;  1SMP A;  3NTN A;  5D7W A;  2ZVD A;  3U1R A;  1JIW P;  1SRP A;  2QUB A;  3WP8 A;  1G9K A;  3HB2 P;  1OM7 A;  1SAT A;  2QUA A;  1K7G A;  3HDA P;  1KAP P;  1GO7 P;  1OM8 A;  5CVW A;  3S6L A;  2Z8X A;  2AGM A;  3VI1 A;  2ZJ6 A;  2XQH A;  1GO8 P;  2YO0 A;  2Z8Z A;  1AKL A;  1OMJ A;  1P9H A;  1H71 P;  1K7I A;  1AF0 A;  2ML2 A;  3ULT A;  4I35 A;  1K7Q A;  1OM6 A;  3A6Z A;  1O0Q A;  3HBV P;  3LAA A; 
#chains in the Genus database with same CATH homology
 2ZJ7 A;  3HBU P;  3A70 A;  3LA9 A;  5CXL A;  1O0T A;  2YO1 A;  1SMP A;  3NTN A;  5D7W A;  2ZVD A;  3U1R A;  1JIW P;  1SRP A;  2QUB A;  3WP8 A;  1G9K A;  3HB2 P;  1OM7 A;  1SAT A;  2QUA A;  1K7G A;  3HDA P;  1KAP P;  1GO7 P;  1OM8 A;  5CVW A;  3S6L A;  2Z8X A;  2AGM A;  3VI1 A;  2ZJ6 A;  2XQH A;  1GO8 P;  2YO0 A;  2Z8Z A;  1AKL A;  1OMJ A;  1P9H A;  1H71 P;  1K7I A;  1AF0 A;  2ML2 A;  3ULT A;  4I35 A;  1K7Q A;  1OM6 A;  3A6Z A;  1O0Q A;  3HBV P;  3LAA A; 
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similar chains in the Genus database (?% sequence similarity)
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