2XQHA

Crystal structure of an immunoglobulin-binding fragment of the trimeric autotransporter adhesin eibd
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
258
structure length
258
Chain Sequence
SDAKASGEFSVAVGNGARATEKASTAVGSWAAADGKQSTALGVGTYAYANASTALGSVAFVDNTATYGTAAGNRAKVDKDATEGTALGAKATVTNKNSVALGANSVTTRDNEVYIGYKTGTESDKTYGTRVLGGLSDGTRNSDAATVGQLNRKVGGVYDDVKARITVESEKQKKYTDQKTSEVNEKVEARTTVGVDSDGKLTRAEGATKTIAVNDGLVALSGRTDRIDYAVGAIDGRVTRNTQSIEKNSKAIAANTRT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords IMMUNOGLOBULIN-BINDING PROTEIN EIBD
publication title The Structure of E. Coli Igg-Binding Protein D Suggests a General Model for Bending and Binding in Trimeric Autotransporter Adhesins.
pubmed doi rcsb
source organism Escherichia coli
total genus 93
structure length 258
sequence length 258
ec nomenclature
pdb deposition date 2010-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05658 YadA_head Head domain of trimeric autotransporter adhesin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 2xqhA01
1G9KA 2ZVDA 3NTNA 2ZJ6A 1KAPP 2XQHA 3LA9A 3ULTA 5CVWA 5D7WA 1K7QA 4I35A 1SRPA 1AKLA 3A70A 3HBVP 3LAAA 3VI1A 1SMPA 1JIWP 1O0QA 1OMJA 2YO1A 1GO7P 1OM8A 1H71P 1OM7A 2ML2A 3HDAP 3WP8A 1K7GA 2Z8ZA 2Z8XA 3HBUP 2QUBA 1SATA 1OM6A 2YO0A 3S6LA 2AGMA 3U1RA 3A6ZA 1O0TA 1P9HA 1AF0A 1GO8P 2ZJ7A 3HB2P 2QUAA 5CXLA 1K7IA
chains in the Genus database with same CATH superfamily
1G9KA 2ZVDA 3NTNA 2ZJ6A 1KAPP 2XQHA 3LA9A 3ULTA 5CVWA 5D7WA 1K7QA 4I35A 1SRPA 1AKLA 3A70A 3HBVP 3LAAA 3VI1A 1SMPA 1JIWP 1O0QA 1OMJA 2YO1A 1GO7P 1OM8A 1H71P 1OM7A 2ML2A 3HDAP 3WP8A 1K7GA 2Z8ZA 2Z8XA 3HBUP 2QUBA 1SATA 1OM6A 2YO0A 3S6LA 2AGMA 3U1RA 3A6ZA 1O0TA 1P9HA 1AF0A 1GO8P 2ZJ7A 3HB2P 4DT5A 2QUAA 5CXLA 1K7IA
chains in the Genus database with same CATH topology
1G9KA 2ZVDA 3NTNA 2ZJ6A 1KAPP 2XQHA 3LA9A 3ULTA 5CVWA 5D7WA 1K7QA 4I35A 1SRPA 1AKLA 3A70A 3HBVP 3LAAA 3VI1A 1SMPA 1JIWP 1O0QA 1OMJA 2YO1A 1GO7P 1OM8A 1H71P 1OM7A 2ML2A 3HDAP 3WP8A 1K7GA 2Z8ZA 2Z8XA 3HBUP 2QUBA 1SATA 1OM6A 2YO0A 3S6LA 2AGMA 3U1RA 3A6ZA 1O0TA 1P9HA 1AF0A 1GO8P 2ZJ7A 3HB2P 2QUAA 5CXLA 1K7IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G9K A;  2ZVD A;  3NTN A;  2ZJ6 A;  1KAP P;  2XQH A;  3LA9 A;  3ULT A;  5CVW A;  5D7W A;  1K7Q A;  4I35 A;  1SRP A;  1AKL A;  3A70 A;  3HBV P;  3LAA A;  3VI1 A;  1SMP A;  1JIW P;  1O0Q A;  1OMJ A;  2YO1 A;  1GO7 P;  1OM8 A;  1H71 P;  1OM7 A;  2ML2 A;  3HDA P;  3WP8 A;  1K7G A;  2Z8Z A;  2Z8X A;  3HBU P;  2QUB A;  1SAT A;  1OM6 A;  2YO0 A;  3S6L A;  2AGM A;  3U1R A;  3A6Z A;  1O0T A;  1P9H A;  1AF0 A;  1GO8 P;  2ZJ7 A;  3HB2 P;  2QUA A;  5CXL A;  1K7I A; 
#chains in the Genus database with same CATH topology
 1G9K A;  2ZVD A;  3NTN A;  2ZJ6 A;  1KAP P;  2XQH A;  3LA9 A;  3ULT A;  5CVW A;  5D7W A;  1K7Q A;  4I35 A;  1SRP A;  1AKL A;  3A70 A;  3HBV P;  3LAA A;  3VI1 A;  1SMP A;  1JIW P;  1O0Q A;  1OMJ A;  2YO1 A;  1GO7 P;  1OM8 A;  1H71 P;  1OM7 A;  2ML2 A;  3HDA P;  3WP8 A;  1K7G A;  2Z8Z A;  2Z8X A;  3HBU P;  2QUB A;  1SAT A;  1OM6 A;  2YO0 A;  3S6L A;  2AGM A;  3U1R A;  3A6Z A;  1O0T A;  1P9H A;  1AF0 A;  1GO8 P;  2ZJ7 A;  3HB2 P;  4DT5 A;  2QUA A;  5CXL A;  1K7I A; 
#chains in the Genus database with same CATH homology
 1G9K A;  2ZVD A;  3NTN A;  2ZJ6 A;  1KAP P;  2XQH A;  3LA9 A;  3ULT A;  5CVW A;  5D7W A;  1K7Q A;  4I35 A;  1SRP A;  1AKL A;  3A70 A;  3HBV P;  3LAA A;  3VI1 A;  1SMP A;  1JIW P;  1O0Q A;  1OMJ A;  2YO1 A;  1GO7 P;  1OM8 A;  1H71 P;  1OM7 A;  2ML2 A;  3HDA P;  3WP8 A;  1K7G A;  2Z8Z A;  2Z8X A;  3HBU P;  2QUB A;  1SAT A;  1OM6 A;  2YO0 A;  3S6L A;  2AGM A;  3U1R A;  3A6Z A;  1O0T A;  1P9H A;  1AF0 A;  1GO8 P;  2ZJ7 A;  3HB2 P;  2QUA A;  5CXL A;  1K7I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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