2XQHA

Crystal structure of an immunoglobulin-binding fragment of the trimeric autotransporter adhesin eibd
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
258
structure length
258
Chain Sequence
SDAKASGEFSVAVGNGARATEKASTAVGSWAAADGKQSTALGVGTYAYANASTALGSVAFVDNTATYGTAAGNRAKVDKDATEGTALGAKATVTNKNSVALGANSVTTRDNEVYIGYKTGTESDKTYGTRVLGGLSDGTRNSDAATVGQLNRKVGGVYDDVKARITVESEKQKKYTDQKTSEVNEKVEARTTVGVDSDGKLTRAEGATKTIAVNDGLVALSGRTDRIDYAVGAIDGRVTRNTQSIEKNSKAIAANTRT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structure of E. Coli Igg-Binding Protein D Suggests a General Model for Bending and Binding in Trimeric Autotransporter Adhesins.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Cell adhesion
molecule keywords IMMUNOGLOBULIN-BINDING PROTEIN EIBD
total genus 93
structure length 258
sequence length 258
ec nomenclature
pdb deposition date 2010-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05658 YadA_head Head domain of trimeric autotransporter adhesin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 2xqhA01
1GO8P 1H71P 1JIWP 2Z8XA 2ZJ7A 1K7QA 2YO0A 3LAAA 5D7WA 2AGMA 1K7IA 2YO1A 1OM7A 2Z8ZA 1AKLA 1G9KA 3NTNA 3S6LA 1OM6A 2ZVDA 3WP8A 1KAPP 1SATA 3HDAP 1O0TA 3A70A 1OM8A 3ULTA 1GO7P 2ML2A 3U1RA 1SRPA 1K7GA 3LA9A 1SMPA 1P9HA 3A6ZA 2XQHA 2QUAA 1O0QA 3VI1A 3HBVP 2ZJ6A 5CVWA 3HB2P 2QUBA 4I35A 5CXLA 1OMJA 3HBUP 1AF0A
chains in the Genus database with same CATH superfamily
1GO8P 1H71P 1JIWP 2Z8XA 2ZJ7A 1K7QA 2YO0A 3LAAA 5D7WA 2AGMA 1K7IA 2YO1A 1OM7A 2Z8ZA 1AKLA 1G9KA 3NTNA 4DT5A 3S6LA 1OM6A 2ZVDA 3WP8A 1KAPP 1SATA 3HDAP 1O0TA 3A70A 1OM8A 3ULTA 1GO7P 2ML2A 3U1RA 1SRPA 1K7GA 3LA9A 1SMPA 1P9HA 3A6ZA 2XQHA 2QUAA 1O0QA 3VI1A 3HBVP 2ZJ6A 5CVWA 3HB2P 2QUBA 4I35A 5CXLA 1OMJA 3HBUP 1AF0A
chains in the Genus database with same CATH topology
1GO8P 1H71P 1JIWP 2Z8XA 2ZJ7A 1K7QA 2YO0A 3LAAA 5D7WA 2AGMA 1K7IA 2YO1A 1OM7A 2Z8ZA 1AKLA 1G9KA 3NTNA 3S6LA 1OM6A 2ZVDA 3WP8A 1KAPP 1SATA 3HDAP 1O0TA 3A70A 1OM8A 3ULTA 1GO7P 2ML2A 3U1RA 1SRPA 1K7GA 3LA9A 1SMPA 1P9HA 3A6ZA 2XQHA 2QUAA 1O0QA 3VI1A 3HBVP 2ZJ6A 5CVWA 3HB2P 2QUBA 4I35A 5CXLA 1OMJA 3HBUP 1AF0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GO8 P;  1H71 P;  1JIW P;  2Z8X A;  2ZJ7 A;  1K7Q A;  2YO0 A;  3LAA A;  5D7W A;  2AGM A;  1K7I A;  2YO1 A;  1OM7 A;  2Z8Z A;  1AKL A;  1G9K A;  3NTN A;  3S6L A;  1OM6 A;  2ZVD A;  3WP8 A;  1KAP P;  1SAT A;  3HDA P;  1O0T A;  3A70 A;  1OM8 A;  3ULT A;  1GO7 P;  2ML2 A;  3U1R A;  1SRP A;  1K7G A;  3LA9 A;  1SMP A;  1P9H A;  3A6Z A;  2XQH A;  2QUA A;  1O0Q A;  3VI1 A;  3HBV P;  2ZJ6 A;  5CVW A;  3HB2 P;  2QUB A;  4I35 A;  5CXL A;  1OMJ A;  3HBU P;  1AF0 A; 
#chains in the Genus database with same CATH topology
 1GO8 P;  1H71 P;  1JIW P;  2Z8X A;  2ZJ7 A;  1K7Q A;  2YO0 A;  3LAA A;  5D7W A;  2AGM A;  1K7I A;  2YO1 A;  1OM7 A;  2Z8Z A;  1AKL A;  1G9K A;  3NTN A;  4DT5 A;  3S6L A;  1OM6 A;  2ZVD A;  3WP8 A;  1KAP P;  1SAT A;  3HDA P;  1O0T A;  3A70 A;  1OM8 A;  3ULT A;  1GO7 P;  2ML2 A;  3U1R A;  1SRP A;  1K7G A;  3LA9 A;  1SMP A;  1P9H A;  3A6Z A;  2XQH A;  2QUA A;  1O0Q A;  3VI1 A;  3HBV P;  2ZJ6 A;  5CVW A;  3HB2 P;  2QUB A;  4I35 A;  5CXL A;  1OMJ A;  3HBU P;  1AF0 A; 
#chains in the Genus database with same CATH homology
 1GO8 P;  1H71 P;  1JIW P;  2Z8X A;  2ZJ7 A;  1K7Q A;  2YO0 A;  3LAA A;  5D7W A;  2AGM A;  1K7I A;  2YO1 A;  1OM7 A;  2Z8Z A;  1AKL A;  1G9K A;  3NTN A;  3S6L A;  1OM6 A;  2ZVD A;  3WP8 A;  1KAP P;  1SAT A;  3HDA P;  1O0T A;  3A70 A;  1OM8 A;  3ULT A;  1GO7 P;  2ML2 A;  3U1R A;  1SRP A;  1K7G A;  3LA9 A;  1SMP A;  1P9H A;  3A6Z A;  2XQH A;  2QUA A;  1O0Q A;  3VI1 A;  3HBV P;  2ZJ6 A;  5CVW A;  3HB2 P;  2QUB A;  4I35 A;  5CXL A;  1OMJ A;  3HBU P;  1AF0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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