2XQHA

Crystal structure of an immunoglobulin-binding fragment of the trimeric autotransporter adhesin eibd
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
258
structure length
258
Chain Sequence
SDAKASGEFSVAVGNGARATEKASTAVGSWAAADGKQSTALGVGTYAYANASTALGSVAFVDNTATYGTAAGNRAKVDKDATEGTALGAKATVTNKNSVALGANSVTTRDNEVYIGYKTGTESDKTYGTRVLGGLSDGTRNSDAATVGQLNRKVGGVYDDVKARITVESEKQKKYTDQKTSEVNEKVEARTTVGVDSDGKLTRAEGATKTIAVNDGLVALSGRTDRIDYAVGAIDGRVTRNTQSIEKNSKAIAANTRT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords IMMUNOGLOBULIN-BINDING PROTEIN EIBD
publication title The Structure of E. Coli Igg-Binding Protein D Suggests a General Model for Bending and Binding in Trimeric Autotransporter Adhesins.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Cell adhesion
total genus 93
structure length 258
sequence length 258
ec nomenclature
pdb deposition date 2010-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05658 YadA_head Head domain of trimeric autotransporter adhesin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 2xqhA01
1KAPP 1OM6A 4I35A 3HBVP 3HB2P 2ML2A 2XQHA 3NTNA 1SRPA 2QUAA 5D7WA 3ULTA 3WP8A 2ZVDA 1K7IA 2YO0A 1O0TA 3LAAA 2YO1A 2ZJ7A 3VI1A 1OMJA 2ZJ6A 1K7GA 3HDAP 3HBUP 1P9HA 1O0QA 1SMPA 3LA9A 5CXLA 1OM7A 1GO8P 1OM8A 1K7QA 1AKLA 3A70A 3A6ZA 1SATA 2Z8XA 2QUBA 1AF0A 1H71P 3U1RA 2AGMA 5CVWA 1G9KA 3S6LA 2Z8ZA 1GO7P 1JIWP
chains in the Genus database with same CATH superfamily
1KAPP 1OM6A 4I35A 3HBVP 3HB2P 2ML2A 2XQHA 3NTNA 1SRPA 2QUAA 5D7WA 3ULTA 3WP8A 2ZVDA 1K7IA 2YO0A 1O0TA 3LAAA 2YO1A 2ZJ7A 3VI1A 1OMJA 2ZJ6A 4DT5A 1K7GA 3HDAP 3HBUP 1P9HA 1O0QA 1SMPA 3LA9A 5CXLA 1OM7A 1GO8P 1OM8A 1K7QA 1AKLA 3A70A 3A6ZA 1SATA 2Z8XA 2QUBA 1AF0A 1H71P 3U1RA 2AGMA 5CVWA 1G9KA 3S6LA 2Z8ZA 1GO7P 1JIWP
chains in the Genus database with same CATH topology
1KAPP 1OM6A 4I35A 3HBVP 3HB2P 2ML2A 2XQHA 3NTNA 1SRPA 2QUAA 5D7WA 3ULTA 3WP8A 2ZVDA 1K7IA 2YO0A 1O0TA 3LAAA 2YO1A 2ZJ7A 3VI1A 1OMJA 2ZJ6A 1K7GA 3HDAP 3HBUP 1P9HA 1O0QA 1SMPA 3LA9A 5CXLA 1OM7A 1GO8P 1OM8A 1K7QA 1AKLA 3A70A 3A6ZA 1SATA 2Z8XA 2QUBA 1AF0A 1H71P 3U1RA 2AGMA 5CVWA 1G9KA 3S6LA 2Z8ZA 1GO7P 1JIWP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KAP P;  1OM6 A;  4I35 A;  3HBV P;  3HB2 P;  2ML2 A;  2XQH A;  3NTN A;  1SRP A;  2QUA A;  5D7W A;  3ULT A;  3WP8 A;  2ZVD A;  1K7I A;  2YO0 A;  1O0T A;  3LAA A;  2YO1 A;  2ZJ7 A;  3VI1 A;  1OMJ A;  2ZJ6 A;  1K7G A;  3HDA P;  3HBU P;  1P9H A;  1O0Q A;  1SMP A;  3LA9 A;  5CXL A;  1OM7 A;  1GO8 P;  1OM8 A;  1K7Q A;  1AKL A;  3A70 A;  3A6Z A;  1SAT A;  2Z8X A;  2QUB A;  1AF0 A;  1H71 P;  3U1R A;  2AGM A;  5CVW A;  1G9K A;  3S6L A;  2Z8Z A;  1GO7 P;  1JIW P; 
#chains in the Genus database with same CATH topology
 1KAP P;  1OM6 A;  4I35 A;  3HBV P;  3HB2 P;  2ML2 A;  2XQH A;  3NTN A;  1SRP A;  2QUA A;  5D7W A;  3ULT A;  3WP8 A;  2ZVD A;  1K7I A;  2YO0 A;  1O0T A;  3LAA A;  2YO1 A;  2ZJ7 A;  3VI1 A;  1OMJ A;  2ZJ6 A;  4DT5 A;  1K7G A;  3HDA P;  3HBU P;  1P9H A;  1O0Q A;  1SMP A;  3LA9 A;  5CXL A;  1OM7 A;  1GO8 P;  1OM8 A;  1K7Q A;  1AKL A;  3A70 A;  3A6Z A;  1SAT A;  2Z8X A;  2QUB A;  1AF0 A;  1H71 P;  3U1R A;  2AGM A;  5CVW A;  1G9K A;  3S6L A;  2Z8Z A;  1GO7 P;  1JIW P; 
#chains in the Genus database with same CATH homology
 1KAP P;  1OM6 A;  4I35 A;  3HBV P;  3HB2 P;  2ML2 A;  2XQH A;  3NTN A;  1SRP A;  2QUA A;  5D7W A;  3ULT A;  3WP8 A;  2ZVD A;  1K7I A;  2YO0 A;  1O0T A;  3LAA A;  2YO1 A;  2ZJ7 A;  3VI1 A;  1OMJ A;  2ZJ6 A;  1K7G A;  3HDA P;  3HBU P;  1P9H A;  1O0Q A;  1SMP A;  3LA9 A;  5CXL A;  1OM7 A;  1GO8 P;  1OM8 A;  1K7Q A;  1AKL A;  3A70 A;  3A6Z A;  1SAT A;  2Z8X A;  2QUB A;  1AF0 A;  1H71 P;  3U1R A;  2AGM A;  5CVW A;  1G9K A;  3S6L A;  2Z8Z A;  1GO7 P;  1JIW P; 
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similar chains in the Genus database (?% sequence similarity)
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