2YO1A

Salmonella enterica sada 1049-1304 fused to gcn4 adaptors (sadak9- cfii)
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
273
structure length
273
Chain Sequence
KYYHANSTEEDSLAVGTDSLAMGAKTIVNADAGIGIGLNTLVMADAINGIAIGSNARANHANSIAMGNGSQTTRGAQTDYTAYNMDTPQNSVGEFSVGSEDGQRQITNVAAGSADTDAVNVGQLKVTDAQVSRNTQSITNLNTQVSNLDTRVTNIENGIGDIVTTGSTKYFKTNTDGADANAQGADSVAIGSGSIAAAENSVALGTNSVADEANTVSVGSSTQQRRITNVAAGVNNTDAVNVAQMKQIEDKIEEILSKIYHIENEIARIKKLI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Complete Fiber Structures of Complex Trimeric Autotransporter Adhesins Conserved in Enterobacteria.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Membrane protein
molecule keywords GENERAL CONTROL PROTEIN GCN4, PUTATIVE INNER MEMBRANE PROTEI
total genus 65
structure length 273
sequence length 273
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2012-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05658 YadA_head Head domain of trimeric autotransporter adhesin
A PF05662 YadA_stalk Coiled stalk of trimeric autotransporter adhesin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 2yo1A01
5CVWA 1K7IA 3HB2P 5D7WA 2XQHA 3NTNA 1SMPA 3HBVP 2ZJ7A 1KAPP 1OMJA 1GO8P 1O0TA 1OM8A 3HBUP 2YO0A 2Z8ZA 1AF0A 3A70A 1SATA 5CXLA 3A6ZA 1OM6A 2QUBA 3WP8A 1O0QA 1GO7P 1SRPA 3HDAP 2AGMA 3ULTA 1G9KA 2ZJ6A 2ML2A 2YO1A 1K7GA 3LA9A 3LAAA 1H71P 4I35A 1JIWP 2ZVDA 1OM7A 2QUAA 3VI1A 1P9HA 3S6LA 1K7QA 2Z8XA 1AKLA 3U1RA
chains in the Genus database with same CATH superfamily
5CVWA 1K7IA 3HB2P 5D7WA 2XQHA 3NTNA 1SMPA 3HBVP 2ZJ7A 1KAPP 1OMJA 1GO8P 1O0TA 1OM8A 3HBUP 2YO0A 2Z8ZA 1AF0A 3A70A 1SATA 5CXLA 3A6ZA 1OM6A 2QUBA 3WP8A 1O0QA 1GO7P 1SRPA 3HDAP 2AGMA 3ULTA 4DT5A 1G9KA 2ZJ6A 2ML2A 2YO1A 1K7GA 3LA9A 3LAAA 1H71P 4I35A 1JIWP 2ZVDA 1OM7A 2QUAA 3VI1A 1P9HA 3S6LA 1K7QA 2Z8XA 1AKLA 3U1RA
chains in the Genus database with same CATH topology
5CVWA 1K7IA 3HB2P 5D7WA 2XQHA 3NTNA 1SMPA 3HBVP 2ZJ7A 1KAPP 1OMJA 1GO8P 1O0TA 1OM8A 3HBUP 2YO0A 2Z8ZA 1AF0A 3A70A 1SATA 5CXLA 3A6ZA 1OM6A 2QUBA 3WP8A 1O0QA 1GO7P 1SRPA 3HDAP 2AGMA 3ULTA 1G9KA 2ZJ6A 2ML2A 2YO1A 1K7GA 3LA9A 3LAAA 1H71P 4I35A 1JIWP 2ZVDA 1OM7A 2QUAA 3VI1A 1P9HA 3S6LA 1K7QA 2Z8XA 1AKLA 3U1RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CVW A;  1K7I A;  3HB2 P;  5D7W A;  2XQH A;  3NTN A;  1SMP A;  3HBV P;  2ZJ7 A;  1KAP P;  1OMJ A;  1GO8 P;  1O0T A;  1OM8 A;  3HBU P;  2YO0 A;  2Z8Z A;  1AF0 A;  3A70 A;  1SAT A;  5CXL A;  3A6Z A;  1OM6 A;  2QUB A;  3WP8 A;  1O0Q A;  1GO7 P;  1SRP A;  3HDA P;  2AGM A;  3ULT A;  1G9K A;  2ZJ6 A;  2ML2 A;  2YO1 A;  1K7G A;  3LA9 A;  3LAA A;  1H71 P;  4I35 A;  1JIW P;  2ZVD A;  1OM7 A;  2QUA A;  3VI1 A;  1P9H A;  3S6L A;  1K7Q A;  2Z8X A;  1AKL A;  3U1R A; 
#chains in the Genus database with same CATH topology
 5CVW A;  1K7I A;  3HB2 P;  5D7W A;  2XQH A;  3NTN A;  1SMP A;  3HBV P;  2ZJ7 A;  1KAP P;  1OMJ A;  1GO8 P;  1O0T A;  1OM8 A;  3HBU P;  2YO0 A;  2Z8Z A;  1AF0 A;  3A70 A;  1SAT A;  5CXL A;  3A6Z A;  1OM6 A;  2QUB A;  3WP8 A;  1O0Q A;  1GO7 P;  1SRP A;  3HDA P;  2AGM A;  3ULT A;  4DT5 A;  1G9K A;  2ZJ6 A;  2ML2 A;  2YO1 A;  1K7G A;  3LA9 A;  3LAA A;  1H71 P;  4I35 A;  1JIW P;  2ZVD A;  1OM7 A;  2QUA A;  3VI1 A;  1P9H A;  3S6L A;  1K7Q A;  2Z8X A;  1AKL A;  3U1R A; 
#chains in the Genus database with same CATH homology
 5CVW A;  1K7I A;  3HB2 P;  5D7W A;  2XQH A;  3NTN A;  1SMP A;  3HBV P;  2ZJ7 A;  1KAP P;  1OMJ A;  1GO8 P;  1O0T A;  1OM8 A;  3HBU P;  2YO0 A;  2Z8Z A;  1AF0 A;  3A70 A;  1SAT A;  5CXL A;  3A6Z A;  1OM6 A;  2QUB A;  3WP8 A;  1O0Q A;  1GO7 P;  1SRP A;  3HDA P;  2AGM A;  3ULT A;  1G9K A;  2ZJ6 A;  2ML2 A;  2YO1 A;  1K7G A;  3LA9 A;  3LAA A;  1H71 P;  4I35 A;  1JIW P;  2ZVD A;  1OM7 A;  2QUA A;  3VI1 A;  1P9H A;  3S6L A;  1K7Q A;  2Z8X A;  1AKL A;  3U1R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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