2YO1A

Salmonella enterica sada 1049-1304 fused to gcn4 adaptors (sadak9- cfii)
Total Genus 65
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
273
structure length
273
Chain Sequence
KYYHANSTEEDSLAVGTDSLAMGAKTIVNADAGIGIGLNTLVMADAINGIAIGSNARANHANSIAMGNGSQTTRGAQTDYTAYNMDTPQNSVGEFSVGSEDGQRQITNVAAGSADTDAVNVGQLKVTDAQVSRNTQSITNLNTQVSNLDTRVTNIENGIGDIVTTGSTKYFKTNTDGADANAQGADSVAIGSGSIAAAENSVALGTNSVADEANTVSVGSSTQQRRITNVAAGVNNTDAVNVAQMKQIEDKIEEILSKIYHIENEIARIKKLI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords GENERAL CONTROL PROTEIN GCN4, PUTATIVE INNER MEMBRANE PROTEI
publication title Complete Fiber Structures of Complex Trimeric Autotransporter Adhesins Conserved in Enterobacteria.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Membrane protein
total genus 65
structure length 273
sequence length 273
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2012-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05658 YadA_head Head domain of trimeric autotransporter adhesin
A PF05662 YadA_stalk Coiled stalk of trimeric autotransporter adhesin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 2yo1A01
1K7IA 2XQHA 3HBUP 1G9KA 2Z8XA 1O0TA 1AKLA 2QUBA 3U1RA 2ZVDA 1P9HA 3HDAP 1SMPA 1OMJA 3WP8A 4I35A 3VI1A 3LAAA 1SATA 1O0QA 1SRPA 3A70A 3A6ZA 3HB2P 1K7GA 1OM7A 5D7WA 2ZJ6A 3ULTA 1K7QA 2QUAA 1GO7P 3NTNA 3S6LA 1KAPP 2AGMA 1JIWP 2YO1A 1AF0A 5CXLA 1OM6A 5CVWA 2YO0A 1H71P 1OM8A 2ZJ7A 2Z8ZA 2ML2A 3HBVP 3LA9A 1GO8P
chains in the Genus database with same CATH superfamily
1K7IA 2XQHA 3HBUP 1G9KA 2Z8XA 1O0TA 1AKLA 2QUBA 4DT5A 3U1RA 2ZVDA 1P9HA 3HDAP 1SMPA 1OMJA 3WP8A 4I35A 3VI1A 3LAAA 1SATA 1O0QA 1SRPA 3A70A 3A6ZA 3HB2P 1K7GA 1OM7A 5D7WA 2ZJ6A 3ULTA 1K7QA 2QUAA 1GO7P 3NTNA 3S6LA 1KAPP 2AGMA 1JIWP 2YO1A 1AF0A 5CXLA 1OM6A 5CVWA 2YO0A 1H71P 1OM8A 2ZJ7A 2Z8ZA 2ML2A 3HBVP 3LA9A 1GO8P
chains in the Genus database with same CATH topology
1K7IA 2XQHA 3HBUP 1G9KA 2Z8XA 1O0TA 1AKLA 2QUBA 3U1RA 2ZVDA 1P9HA 3HDAP 1SMPA 1OMJA 3WP8A 4I35A 3VI1A 3LAAA 1SATA 1O0QA 1SRPA 3A70A 3A6ZA 3HB2P 1K7GA 1OM7A 5D7WA 2ZJ6A 3ULTA 1K7QA 2QUAA 1GO7P 3NTNA 3S6LA 1KAPP 2AGMA 1JIWP 2YO1A 1AF0A 5CXLA 1OM6A 5CVWA 2YO0A 1H71P 1OM8A 2ZJ7A 2Z8ZA 2ML2A 3HBVP 3LA9A 1GO8P
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K7I A;  2XQH A;  3HBU P;  1G9K A;  2Z8X A;  1O0T A;  1AKL A;  2QUB A;  3U1R A;  2ZVD A;  1P9H A;  3HDA P;  1SMP A;  1OMJ A;  3WP8 A;  4I35 A;  3VI1 A;  3LAA A;  1SAT A;  1O0Q A;  1SRP A;  3A70 A;  3A6Z A;  3HB2 P;  1K7G A;  1OM7 A;  5D7W A;  2ZJ6 A;  3ULT A;  1K7Q A;  2QUA A;  1GO7 P;  3NTN A;  3S6L A;  1KAP P;  2AGM A;  1JIW P;  2YO1 A;  1AF0 A;  5CXL A;  1OM6 A;  5CVW A;  2YO0 A;  1H71 P;  1OM8 A;  2ZJ7 A;  2Z8Z A;  2ML2 A;  3HBV P;  3LA9 A;  1GO8 P; 
#chains in the Genus database with same CATH topology
 1K7I A;  2XQH A;  3HBU P;  1G9K A;  2Z8X A;  1O0T A;  1AKL A;  2QUB A;  4DT5 A;  3U1R A;  2ZVD A;  1P9H A;  3HDA P;  1SMP A;  1OMJ A;  3WP8 A;  4I35 A;  3VI1 A;  3LAA A;  1SAT A;  1O0Q A;  1SRP A;  3A70 A;  3A6Z A;  3HB2 P;  1K7G A;  1OM7 A;  5D7W A;  2ZJ6 A;  3ULT A;  1K7Q A;  2QUA A;  1GO7 P;  3NTN A;  3S6L A;  1KAP P;  2AGM A;  1JIW P;  2YO1 A;  1AF0 A;  5CXL A;  1OM6 A;  5CVW A;  2YO0 A;  1H71 P;  1OM8 A;  2ZJ7 A;  2Z8Z A;  2ML2 A;  3HBV P;  3LA9 A;  1GO8 P; 
#chains in the Genus database with same CATH homology
 1K7I A;  2XQH A;  3HBU P;  1G9K A;  2Z8X A;  1O0T A;  1AKL A;  2QUB A;  3U1R A;  2ZVD A;  1P9H A;  3HDA P;  1SMP A;  1OMJ A;  3WP8 A;  4I35 A;  3VI1 A;  3LAA A;  1SAT A;  1O0Q A;  1SRP A;  3A70 A;  3A6Z A;  3HB2 P;  1K7G A;  1OM7 A;  5D7W A;  2ZJ6 A;  3ULT A;  1K7Q A;  2QUA A;  1GO7 P;  3NTN A;  3S6L A;  1KAP P;  2AGM A;  1JIW P;  2YO1 A;  1AF0 A;  5CXL A;  1OM6 A;  5CVW A;  2YO0 A;  1H71 P;  1OM8 A;  2ZJ7 A;  2Z8Z A;  2ML2 A;  3HBV P;  3LA9 A;  1GO8 P; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...