2YO0A

Salmonella enterica sada 1049-1304 fused to gcn4 adaptors (sadak9-cfi)
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
276
structure length
276
Chain Sequence
KYYHANSTEEDSLAVGTDSLAMGAKTIVNADAGIGIGLNTLVMADAINGIAIGSNARANHANSIAMGNGSQTTRGAQTDYTAYNMDTPQNSVGEFSVGSEDGQRQITNVAAGSADTDAVNVGQLKVTDAQVSRNTQSITNLNTQVSNLDTRVTNIENGIGDIVTTGSTKYFKTNTDGADANAQGADSVAIGSGSIAAAENSVALGTNSVADEANTVSVGSSTQQRRITNVAAGVNNTDAVNVAQMKQIEDKIEEILSKIYHIENEIARIKKLIKLH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Complete Fiber Structures of Complex Trimeric Autotransporter Adhesins Conserved in Enterobacteria.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Membrane protein
molecule keywords GENERAL CONTROL PROTEIN GCN4, PUTATIVE INNER MEMBRANE PROTEI
total genus 64
structure length 276
sequence length 276
ec nomenclature
pdb deposition date 2012-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05658 YadA_head Head domain of trimeric autotransporter adhesin
A PF05662 YadA_stalk Coiled stalk of trimeric autotransporter adhesin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 2yo0A01
1P9HA 5D7WA 1K7QA 1SMPA 3LA9A 1H71P 1SATA 2XQHA 3VI1A 1G9KA 3HBVP 3U1RA 2ZVDA 1OM7A 2QUAA 1JIWP 5CXLA 1OM8A 1K7IA 1GO8P 2Z8XA 5CVWA 4I35A 3NTNA 2YO0A 3A6ZA 1O0TA 3S6LA 1OM6A 2QUBA 2YO1A 3HBUP 1SRPA 2ZJ7A 1KAPP 3ULTA 3LAAA 1O0QA 1OMJA 3A70A 2AGMA 3HDAP 3WP8A 1AKLA 1K7GA 2ML2A 1GO7P 2ZJ6A 2Z8ZA 1AF0A 3HB2P
chains in the Genus database with same CATH superfamily
1P9HA 5D7WA 1K7QA 1SMPA 3LA9A 1H71P 1SATA 2XQHA 3VI1A 4DT5A 1G9KA 3HBVP 3U1RA 2ZVDA 1OM7A 2QUAA 1JIWP 5CXLA 1OM8A 1K7IA 1GO8P 2Z8XA 5CVWA 4I35A 3NTNA 2YO0A 3A6ZA 1O0TA 3S6LA 1OM6A 2QUBA 2YO1A 3HBUP 1SRPA 2ZJ7A 1KAPP 3ULTA 3LAAA 1O0QA 1OMJA 3A70A 2AGMA 3HDAP 3WP8A 1AKLA 1K7GA 2ML2A 1GO7P 2ZJ6A 2Z8ZA 1AF0A 3HB2P
chains in the Genus database with same CATH topology
1P9HA 5D7WA 1K7QA 1SMPA 3LA9A 1H71P 1SATA 2XQHA 3VI1A 1G9KA 3HBVP 3U1RA 2ZVDA 1OM7A 2QUAA 1JIWP 5CXLA 1OM8A 1K7IA 1GO8P 2Z8XA 5CVWA 4I35A 3NTNA 2YO0A 3A6ZA 1O0TA 3S6LA 1OM6A 2QUBA 2YO1A 3HBUP 1SRPA 2ZJ7A 1KAPP 3ULTA 3LAAA 1O0QA 1OMJA 3A70A 2AGMA 3HDAP 3WP8A 1AKLA 1K7GA 2ML2A 1GO7P 2ZJ6A 2Z8ZA 1AF0A 3HB2P
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P9H A;  5D7W A;  1K7Q A;  1SMP A;  3LA9 A;  1H71 P;  1SAT A;  2XQH A;  3VI1 A;  1G9K A;  3HBV P;  3U1R A;  2ZVD A;  1OM7 A;  2QUA A;  1JIW P;  5CXL A;  1OM8 A;  1K7I A;  1GO8 P;  2Z8X A;  5CVW A;  4I35 A;  3NTN A;  2YO0 A;  3A6Z A;  1O0T A;  3S6L A;  1OM6 A;  2QUB A;  2YO1 A;  3HBU P;  1SRP A;  2ZJ7 A;  1KAP P;  3ULT A;  3LAA A;  1O0Q A;  1OMJ A;  3A70 A;  2AGM A;  3HDA P;  3WP8 A;  1AKL A;  1K7G A;  2ML2 A;  1GO7 P;  2ZJ6 A;  2Z8Z A;  1AF0 A;  3HB2 P; 
#chains in the Genus database with same CATH topology
 1P9H A;  5D7W A;  1K7Q A;  1SMP A;  3LA9 A;  1H71 P;  1SAT A;  2XQH A;  3VI1 A;  4DT5 A;  1G9K A;  3HBV P;  3U1R A;  2ZVD A;  1OM7 A;  2QUA A;  1JIW P;  5CXL A;  1OM8 A;  1K7I A;  1GO8 P;  2Z8X A;  5CVW A;  4I35 A;  3NTN A;  2YO0 A;  3A6Z A;  1O0T A;  3S6L A;  1OM6 A;  2QUB A;  2YO1 A;  3HBU P;  1SRP A;  2ZJ7 A;  1KAP P;  3ULT A;  3LAA A;  1O0Q A;  1OMJ A;  3A70 A;  2AGM A;  3HDA P;  3WP8 A;  1AKL A;  1K7G A;  2ML2 A;  1GO7 P;  2ZJ6 A;  2Z8Z A;  1AF0 A;  3HB2 P; 
#chains in the Genus database with same CATH homology
 1P9H A;  5D7W A;  1K7Q A;  1SMP A;  3LA9 A;  1H71 P;  1SAT A;  2XQH A;  3VI1 A;  1G9K A;  3HBV P;  3U1R A;  2ZVD A;  1OM7 A;  2QUA A;  1JIW P;  5CXL A;  1OM8 A;  1K7I A;  1GO8 P;  2Z8X A;  5CVW A;  4I35 A;  3NTN A;  2YO0 A;  3A6Z A;  1O0T A;  3S6L A;  1OM6 A;  2QUB A;  2YO1 A;  3HBU P;  1SRP A;  2ZJ7 A;  1KAP P;  3ULT A;  3LAA A;  1O0Q A;  1OMJ A;  3A70 A;  2AGM A;  3HDA P;  3WP8 A;  1AKL A;  1K7G A;  2ML2 A;  1GO7 P;  2ZJ6 A;  2Z8Z A;  1AF0 A;  3HB2 P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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