3LQUA

Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase complexed with ribulose-5 phosphate
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
205
structure length
205
Chain Sequence
SFGTPFERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQAH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Potential anti-bacterial drug target: structural characterization of 3,4-dihydroxy-2-butanone-4-phosphate synthase from Salmonella typhimurium LT2.
pubmed doi rcsb
molecule tags Lyase
source organism Salmonella typhimurium
molecule keywords 3,4-dihydroxy-2-butanone 4-phosphate synthase
total genus 68
structure length 205
sequence length 205
chains with identical sequence B
ec nomenclature ec 4.1.99.12: 3,4-dihydroxy-2-butanone-4-phosphate synthase.
pdb deposition date 2010-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00926 DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.870.10 Alpha Beta Alpha-Beta Complex DHBP synthase DHBP synthase 3lquA00
4P6PA 4E1BA 3LQUA 1K4OA 4P6DA 3AJEA 2MX1A 3MIOA 4P8EA 1K4IA 4P8JA 1TKUA 1SNNA 3H07A 3LRJA 1KK9A 1K7JA 3MGZA 1K4PA 4FFJA 1PVWA 1HRUA 1G57A 1G58A 2RISA 3L7VA 2RIUA 1K4LA 1K49A 1JCUA 2EQAA 3LS6A 3MK5A 4P77A 1TKSA 1IEZA 4P6CA 1PVYA 4I14A
chains in the Genus database with same CATH superfamily
4P6PA 4E1BA 3LQUA 1K4OA 4P6DA 3TTFA 3AJEA 3VESA 2MX1A 3VF4A 3MIOA 3VEWA 4P8EA 1K4IA 4P8JA 3VENA 3VTHA 1TKUA 1SNNA 3VTIA 3H07A 3LRJA 3VEOA 1KK9A 3TSUA 1K7JA 3MGZA 3TTDA 3TSPA 1K4PA 4FFJA 1PVWA 3VEXA 1HRUA 1G57A 1G58A 2RISA 3L7VA 3VERA 2RIUA 1K4LA 1K49A 3TSQA 1JCUA 3TTCA 2EQAA 3VEZA 3VF2A 3LS6A 3VETA 3MK5A 4P77A 1TKSA 1IEZA 4P6CA 1PVYA 4I14A
chains in the Genus database with same CATH topology
4P6PA 4E1BA 3LQUA 1K4OA 4P6DA 3TTFA 3AJEA 3VESA 2MX1A 3VF4A 3MIOA 3VEWA 4P8EA 1K4IA 4P8JA 3VENA 3VTHA 1TKUA 1SNNA 3VTIA 3H07A 3LRJA 3VEOA 1KK9A 3TSUA 1K7JA 3MGZA 3TTDA 3TSPA 1K4PA 4FFJA 1PVWA 3VEXA 1HRUA 1G57A 1G58A 2RISA 3L7VA 3VERA 2RIUA 1K4LA 1K49A 3TSQA 1JCUA 3TTCA 2EQAA 3VEZA 3VF2A 3LS6A 3VETA 3MK5A 4P77A 1TKSA 1IEZA 4P6CA 1PVYA 4I14A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P6P A;  4E1B A;  3LQU A;  1K4O A;  4P6D A;  3AJE A;  2MX1 A;  3MIO A;  4P8E A;  1K4I A;  4P8J A;  1TKU A;  1SNN A;  3H07 A;  3LRJ A;  1KK9 A;  1K7J A;  3MGZ A;  1K4P A;  4FFJ A;  1PVW A;  1HRU A;  1G57 A;  1G58 A;  2RIS A;  3L7V A;  2RIU A;  1K4L A;  1K49 A;  1JCU A;  2EQA A;  3LS6 A;  3MK5 A;  4P77 A;  1TKS A;  1IEZ A;  4P6C A;  1PVY A;  4I14 A; 
#chains in the Genus database with same CATH topology
 4P6P A;  4E1B A;  3LQU A;  1K4O A;  4P6D A;  3TTF A;  3AJE A;  3VES A;  2MX1 A;  3VF4 A;  3MIO A;  3VEW A;  4P8E A;  1K4I A;  4P8J A;  3VEN A;  3VTH A;  1TKU A;  1SNN A;  3VTI A;  3H07 A;  3LRJ A;  3VEO A;  1KK9 A;  3TSU A;  1K7J A;  3MGZ A;  3TTD A;  3TSP A;  1K4P A;  4FFJ A;  1PVW A;  3VEX A;  1HRU A;  1G57 A;  1G58 A;  2RIS A;  3L7V A;  3VER A;  2RIU A;  1K4L A;  1K49 A;  3TSQ A;  1JCU A;  3TTC A;  2EQA A;  3VEZ A;  3VF2 A;  3LS6 A;  3VET A;  3MK5 A;  4P77 A;  1TKS A;  1IEZ A;  4P6C A;  1PVY A;  4I14 A; 
#chains in the Genus database with same CATH homology
 4P6P A;  4E1B A;  3LQU A;  1K4O A;  4P6D A;  3TTF A;  3AJE A;  3VES A;  2MX1 A;  3VF4 A;  3MIO A;  3VEW A;  4P8E A;  1K4I A;  4P8J A;  3VEN A;  3VTH A;  1TKU A;  1SNN A;  3VTI A;  3H07 A;  3LRJ A;  3VEO A;  1KK9 A;  3TSU A;  1K7J A;  3MGZ A;  3TTD A;  3TSP A;  1K4P A;  4FFJ A;  1PVW A;  3VEX A;  1HRU A;  1G57 A;  1G58 A;  2RIS A;  3L7V A;  3VER A;  2RIU A;  1K4L A;  1K49 A;  3TSQ A;  1JCU A;  3TTC A;  2EQA A;  3VEZ A;  3VF2 A;  3LS6 A;  3VET A;  3MK5 A;  4P77 A;  1TKS A;  1IEZ A;  4P6C A;  1PVY A;  4I14 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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