3VVJA

Structure of ovalbumin from emu (dromaius novaehollandiae)
Total Genus 114
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
387
structure length
384
Chain Sequence
GSIGAASTEFCFDMFKELKVHHVNENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGESLESQCGTSVSVHASLKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQARELINSWVETQTNGVIKNFLQPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITEQESKPVQMMYQAGSFKVATVAAEKMKILELPYASGELSMFVLLPDDISGLEQLETTISIEKLSEWTSSNMMEDRKMKVYLPHMKIEEKYNLTSVLVALGMTDLFSPSANLSGISTAQTLKMSEAIHGAYVEIYEAGSEMATSTGVLVEVSEEFRVDHPFLFLIKHNPSNSILFFGRCIFPHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase inhibitor
molecule keywords Ovalbumin
publication title Structure of Emu (Dromaius novaehollandiae) ovalbumin revealed a unique folding topology
rcsb
source organism Dromaius novaehollandiae
total genus 114
structure length 384
sequence length 387
chains with identical sequence B, C
other databases KnotProt 2.0: Artifct S 41 -31 -3
ec nomenclature
pdb deposition date 2012-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 3vvjA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 3vvjA01
1C8OA 2ACHA 4Y40A 3F02A 4AU2A 3R4LA 5CE0A 3T1PA 1LK6I 1DZGI 3LE2A 4AU4A 3EOXA 4C41A 3NE4A 4ROBA 2BEHI 2VDXA 2WY1A 2H4QA 2PEEA 4CAAA 4EB1I 1SEKA 2OAYA 1R1LI 5BRRI 4Y3KA 8APIA 1DZHI 2B4XL 1MTPA 3F5NA 3NDDA 3DLWA 3DRMA 1ATUA 5HGCA 2D26A 1OYHL 1A7CA 3DY0A 1QMBA 4YIAA 4G8RA 1BR8I 1QMNA 4ZK0A 1IZ2A 4DTEA 1ATHA 4IC0A 2WXXA 1BY7A 5EI0A 2XN6A 3FGQA 2B5TI 2WXZC 3EVJI 1JVQI 3NDFA 1OC0A 1TB6I 2ARQA 2PEFA 5C98A 1E05I 3CVMA 1OO8A 1OVAC 2OL2A 1JTIA 1HLEA 1XQJA 4IF8A 1LJ5A 1KCTA 4BB2A 4GA7A 1E04I 2VDYA 5INWA 4DY7C 1DZGL 4AJUA 4AU3B 1OPHA 4AQHA 2HI9A 2RIWA 1JRRA 9APIA 1XU8A 7APIA 4AJTA 2XN3A 3CWMA 1OYHI 2V95A 1AS4A 3CAAA 1JJOC 1HP7A 1E03I 1AZXI 1PSIA 3PZFA 2HIJL 1B3KA 3PB1I 4R9IA 1DB2A 1M93B 3DRUA 2XN5A 2GD4C 5CDXA 4G8OA 4X30A 3NDAA 2H4RA 1EZXA 1OVAB 4RO9A 1LQ8A 1ANTI 1T1FA 4P0FA 9PAIA 4AU3A 3VVJA 3Q02A 4AFXA 2ARRA 1YXAA 2QUGA 3Q03A 1DVNA 2H4PA 3LW2A 2B4XI 3KCGI 1C5GA 2WXYC 4DY0A 3CWLA 2BEHL 3STOA 4PYWA 1SNGA 2WXZA 1WZ9A 2ANTI 4EB1L 4P0OA 1ATTA 2RIVA 4RSQA 1K9OI 1UHGA 1DZHL 3UT3A 2XN7A 4ROAA 1JMOA 1OVAA 1XQGA 2R9YA 3F1SA 1DVMA 3H5CA 2ZV6A 2VH4A 1JMJA 1NQ9I 4C49A 2HIJI 1SR5A 4KDSA 3B9FI 1IMVA 2WXWA 1D5SA 2WY0C 3OZQA 1F0CA 2DUTA 1QLPA 2ZNHA 3ZHAA 5IO1A 4ZK3A 2CEOA 5CDZA
chains in the Genus database with same CATH superfamily
1C8OA 2ACHA 4Y40A 3F02A 4AU2A 3R4LA 5CE0A 3T1PA 1LK6I 1DZGI 3LE2A 4AU4A 3EOXA 4C41A 3NE4A 4ROBA 2BEHI 2VDXA 2WY1A 2H4QA 2PEEA 4CAAA 4EB1I 1SEKA 2OAYA 1R1LI 5BRRI 4Y3KA 8APIA 1DZHI 2B4XL 1MTPA 3F5NA 3NDDA 3DLWA 3DRMA 1ATUA 5HGCA 2D26A 1OYHL 1A7CA 3DY0A 1QMBA 4YIAA 4G8RA 1BR8I 1QMNA 4ZK0A 1IZ2A 4DTEA 1ATHA 4IC0A 2WXXA 1BY7A 5EI0A 2XN6A 3FGQA 2B5TI 2WXZC 3EVJI 1JVQI 3NDFA 1OC0A 1TB6I 2ARQA 2PEFA 5C98A 1E05I 3CVMA 1OO8A 1OVAC 2OL2A 1JTIA 1HLEA 1XQJA 4IF8A 1LJ5A 1KCTA 4BB2A 4GA7A 1E04I 2VDYA 5INWA 4DY7C 1DZGL 4AJUA 4AU3B 1OPHA 4AQHA 2HI9A 2RIWA 1JRRA 9APIA 1XU8A 7APIA 4AJTA 2XN3A 3CWMA 1OYHI 2V95A 1AS4A 3CAAA 1JJOC 1HP7A 1E03I 1AZXI 1PSIA 3PZFA 2HIJL 1B3KA 3PB1I 4R9IA 1DB2A 1M93B 3DRUA 2XN5A 2GD4C 5CDXA 4G8OA 4X30A 3NDAA 2H4RA 1EZXA 1OVAB 4RO9A 1LQ8A 1ANTI 1T1FA 4P0FA 9PAIA 4AU3A 3VVJA 3Q02A 4AFXA 2ARRA 1YXAA 2QUGA 3Q03A 1DVNA 2H4PA 3LW2A 2B4XI 3KCGI 1C5GA 2WXYC 4DY0A 3CWLA 2BEHL 3STOA 4PYWA 1SNGA 2WXZA 1WZ9A 2ANTI 4EB1L 4P0OA 1ATTA 2RIVA 4RSQA 1K9OI 1UHGA 1DZHL 3UT3A 2XN7A 4ROAA 1JMOA 1OVAA 1XQGA 2R9YA 3F1SA 1DVMA 3H5CA 2ZV6A 2VH4A 1JMJA 1NQ9I 4C49A 2HIJI 1SR5A 4KDSA 3B9FI 1IMVA 2WXWA 1D5SA 2WY0C 3OZQA 1F0CA 2DUTA 1QLPA 2ZNHA 3ZHAA 5IO1A 4ZK3A 2CEOA 5CDZA
chains in the Genus database with same CATH topology
1C8OA 2ACHA 4Y40A 3F02A 4AU2A 3R4LA 5CE0A 3T1PA 1LK6I 1DZGI 3LE2A 4AU4A 3EOXA 4C41A 3NE4A 4ROBA 2BEHI 2VDXA 2WY1A 2H4QA 2PEEA 4CAAA 4EB1I 1SEKA 2OAYA 1R1LI 5BRRI 4Y3KA 8APIA 1DZHI 2B4XL 1MTPA 3F5NA 3NDDA 3DLWA 3DRMA 1ATUA 5HGCA 2D26A 1OYHL 1A7CA 3DY0A 1QMBA 4YIAA 4G8RA 1BR8I 1QMNA 4ZK0A 1IZ2A 4DTEA 1ATHA 4IC0A 2WXXA 1BY7A 5EI0A 2XN6A 3FGQA 2B5TI 2WXZC 3EVJI 1JVQI 3NDFA 1OC0A 1TB6I 2ARQA 2PEFA 5C98A 1E05I 3CVMA 1OO8A 1OVAC 2OL2A 1JTIA 1HLEA 1XQJA 4IF8A 1LJ5A 1KCTA 4BB2A 4GA7A 1E04I 2VDYA 5INWA 4DY7C 1DZGL 4AJUA 4AU3B 1OPHA 4AQHA 2HI9A 2RIWA 1JRRA 9APIA 1XU8A 7APIA 4AJTA 2XN3A 3CWMA 1OYHI 2V95A 1AS4A 3CAAA 1JJOC 1HP7A 1E03I 1AZXI 1PSIA 3PZFA 2HIJL 1B3KA 3PB1I 4R9IA 1DB2A 1M93B 3DRUA 2XN5A 2GD4C 5CDXA 4G8OA 4X30A 3NDAA 2H4RA 1EZXA 1OVAB 4RO9A 1LQ8A 1ANTI 1T1FA 4P0FA 9PAIA 4AU3A 3VVJA 3Q02A 4AFXA 2ARRA 1YXAA 2QUGA 3Q03A 1DVNA 2H4PA 3LW2A 2B4XI 3KCGI 1C5GA 2WXYC 4DY0A 3CWLA 2BEHL 3STOA 4PYWA 1SNGA 2WXZA 1WZ9A 2ANTI 4EB1L 4P0OA 1ATTA 2RIVA 4RSQA 1K9OI 1UHGA 1DZHL 3UT3A 2XN7A 4ROAA 1JMOA 1OVAA 1XQGA 2R9YA 3F1SA 1DVMA 3H5CA 2ZV6A 2VH4A 1JMJA 1NQ9I 4C49A 2HIJI 1SR5A 4KDSA 3B9FI 1IMVA 2WXWA 1D5SA 2WY0C 3OZQA 1F0CA 2DUTA 1QLPA 2ZNHA 3ZHAA 5IO1A 4ZK3A 2CEOA 5CDZA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1C8O A;  2ACH A;  4Y40 A;  3F02 A;  4AU2 A;  3R4L A;  5CE0 A;  3T1P A;  1LK6 I;  1DZG I;  3LE2 A;  4AU4 A;  3EOX A;  4C41 A;  3NE4 A;  4ROB A;  2BEH I;  2VDX A;  2WY1 A;  2H4Q A;  2PEE A;  4CAA A;  4EB1 I;  1SEK A;  2OAY A;  1R1L I;  5BRR I;  4Y3K A;  8API A;  1DZH I;  2B4X L;  1MTP A;  3F5N A;  3NDD A;  3DLW A;  3DRM A;  1ATU A;  5HGC A;  2D26 A;  1OYH L;  1A7C A;  3DY0 A;  1QMB A;  4YIA A;  4G8R A;  1BR8 I;  1QMN A;  4ZK0 A;  1IZ2 A;  4DTE A;  1ATH A;  4IC0 A;  2WXX A;  1BY7 A;  5EI0 A;  2XN6 A;  3FGQ A;  2B5T I;  2WXZ C;  3EVJ I;  1JVQ I;  3NDF A;  1OC0 A;  1TB6 I;  2ARQ A;  2PEF A;  5C98 A;  1E05 I;  3CVM A;  1OO8 A;  1OVA C;  2OL2 A;  1JTI A;  1HLE A;  1XQJ A;  4IF8 A;  1LJ5 A;  1KCT A;  4BB2 A;  4GA7 A;  1E04 I;  2VDY A;  5INW A;  4DY7 C;  1DZG L;  4AJU A;  4AU3 B;  1OPH A;  4AQH A;  2HI9 A;  2RIW A;  1JRR A;  9API A;  1XU8 A;  7API A;  4AJT A;  2XN3 A;  3CWM A;  1OYH I;  2V95 A;  1AS4 A;  3CAA A;  1JJO C;  1HP7 A;  1E03 I;  1AZX I;  1PSI A;  3PZF A;  2HIJ L;  1B3K A;  3PB1 I;  4R9I A;  1DB2 A;  1M93 B;  3DRU A;  2XN5 A;  2GD4 C;  5CDX A;  4G8O A;  4X30 A;  3NDA A;  2H4R A;  1EZX A;  1OVA B;  4RO9 A;  1LQ8 A;  1ANT I;  1T1F A;  4P0F A;  9PAI A;  4AU3 A;  3VVJ A;  3Q02 A;  4AFX A;  2ARR A;  1YXA A;  2QUG A;  3Q03 A;  1DVN A;  2H4P A;  3LW2 A;  2B4X I;  3KCG I;  1C5G A;  2WXY C;  4DY0 A;  3CWL A;  2BEH L;  3STO A;  4PYW A;  1SNG A;  2WXZ A;  1WZ9 A;  2ANT I;  4EB1 L;  4P0O A;  1ATT A;  2RIV A;  4RSQ A;  1K9O I;  1UHG A;  1DZH L;  3UT3 A;  2XN7 A;  4ROA A;  1JMO A;  1OVA A;  1XQG A;  2R9Y A;  3F1S A;  1DVM A;  3H5C A;  2ZV6 A;  2VH4 A;  1JMJ A;  1NQ9 I;  4C49 A;  2HIJ I;  1SR5 A;  4KDS A;  3B9F I;  1IMV A;  2WXW A;  1D5S A;  2WY0 C;  3OZQ A;  1F0C A;  2DUT A;  1QLP A;  2ZNH A;  3ZHA A;  5IO1 A;  4ZK3 A;  2CEO A;  5CDZ A; 
#chains in the Genus database with same CATH topology
 1C8O A;  2ACH A;  4Y40 A;  3F02 A;  4AU2 A;  3R4L A;  5CE0 A;  3T1P A;  1LK6 I;  1DZG I;  3LE2 A;  4AU4 A;  3EOX A;  4C41 A;  3NE4 A;  4ROB A;  2BEH I;  2VDX A;  2WY1 A;  2H4Q A;  2PEE A;  4CAA A;  4EB1 I;  1SEK A;  2OAY A;  1R1L I;  5BRR I;  4Y3K A;  8API A;  1DZH I;  2B4X L;  1MTP A;  3F5N A;  3NDD A;  3DLW A;  3DRM A;  1ATU A;  5HGC A;  2D26 A;  1OYH L;  1A7C A;  3DY0 A;  1QMB A;  4YIA A;  4G8R A;  1BR8 I;  1QMN A;  4ZK0 A;  1IZ2 A;  4DTE A;  1ATH A;  4IC0 A;  2WXX A;  1BY7 A;  5EI0 A;  2XN6 A;  3FGQ A;  2B5T I;  2WXZ C;  3EVJ I;  1JVQ I;  3NDF A;  1OC0 A;  1TB6 I;  2ARQ A;  2PEF A;  5C98 A;  1E05 I;  3CVM A;  1OO8 A;  1OVA C;  2OL2 A;  1JTI A;  1HLE A;  1XQJ A;  4IF8 A;  1LJ5 A;  1KCT A;  4BB2 A;  4GA7 A;  1E04 I;  2VDY A;  5INW A;  4DY7 C;  1DZG L;  4AJU A;  4AU3 B;  1OPH A;  4AQH A;  2HI9 A;  2RIW A;  1JRR A;  9API A;  1XU8 A;  7API A;  4AJT A;  2XN3 A;  3CWM A;  1OYH I;  2V95 A;  1AS4 A;  3CAA A;  1JJO C;  1HP7 A;  1E03 I;  1AZX I;  1PSI A;  3PZF A;  2HIJ L;  1B3K A;  3PB1 I;  4R9I A;  1DB2 A;  1M93 B;  3DRU A;  2XN5 A;  2GD4 C;  5CDX A;  4G8O A;  4X30 A;  3NDA A;  2H4R A;  1EZX A;  1OVA B;  4RO9 A;  1LQ8 A;  1ANT I;  1T1F A;  4P0F A;  9PAI A;  4AU3 A;  3VVJ A;  3Q02 A;  4AFX A;  2ARR A;  1YXA A;  2QUG A;  3Q03 A;  1DVN A;  2H4P A;  3LW2 A;  2B4X I;  3KCG I;  1C5G A;  2WXY C;  4DY0 A;  3CWL A;  2BEH L;  3STO A;  4PYW A;  1SNG A;  2WXZ A;  1WZ9 A;  2ANT I;  4EB1 L;  4P0O A;  1ATT A;  2RIV A;  4RSQ A;  1K9O I;  1UHG A;  1DZH L;  3UT3 A;  2XN7 A;  4ROA A;  1JMO A;  1OVA A;  1XQG A;  2R9Y A;  3F1S A;  1DVM A;  3H5C A;  2ZV6 A;  2VH4 A;  1JMJ A;  1NQ9 I;  4C49 A;  2HIJ I;  1SR5 A;  4KDS A;  3B9F I;  1IMV A;  2WXW A;  1D5S A;  2WY0 C;  3OZQ A;  1F0C A;  2DUT A;  1QLP A;  2ZNH A;  3ZHA A;  5IO1 A;  4ZK3 A;  2CEO A;  5CDZ A; 
#chains in the Genus database with same CATH homology
 1C8O A;  2ACH A;  4Y40 A;  3F02 A;  4AU2 A;  3R4L A;  5CE0 A;  3T1P A;  1LK6 I;  1DZG I;  3LE2 A;  4AU4 A;  3EOX A;  4C41 A;  3NE4 A;  4ROB A;  2BEH I;  2VDX A;  2WY1 A;  2H4Q A;  2PEE A;  4CAA A;  4EB1 I;  1SEK A;  2OAY A;  1R1L I;  5BRR I;  4Y3K A;  8API A;  1DZH I;  2B4X L;  1MTP A;  3F5N A;  3NDD A;  3DLW A;  3DRM A;  1ATU A;  5HGC A;  2D26 A;  1OYH L;  1A7C A;  3DY0 A;  1QMB A;  4YIA A;  4G8R A;  1BR8 I;  1QMN A;  4ZK0 A;  1IZ2 A;  4DTE A;  1ATH A;  4IC0 A;  2WXX A;  1BY7 A;  5EI0 A;  2XN6 A;  3FGQ A;  2B5T I;  2WXZ C;  3EVJ I;  1JVQ I;  3NDF A;  1OC0 A;  1TB6 I;  2ARQ A;  2PEF A;  5C98 A;  1E05 I;  3CVM A;  1OO8 A;  1OVA C;  2OL2 A;  1JTI A;  1HLE A;  1XQJ A;  4IF8 A;  1LJ5 A;  1KCT A;  4BB2 A;  4GA7 A;  1E04 I;  2VDY A;  5INW A;  4DY7 C;  1DZG L;  4AJU A;  4AU3 B;  1OPH A;  4AQH A;  2HI9 A;  2RIW A;  1JRR A;  9API A;  1XU8 A;  7API A;  4AJT A;  2XN3 A;  3CWM A;  1OYH I;  2V95 A;  1AS4 A;  3CAA A;  1JJO C;  1HP7 A;  1E03 I;  1AZX I;  1PSI A;  3PZF A;  2HIJ L;  1B3K A;  3PB1 I;  4R9I A;  1DB2 A;  1M93 B;  3DRU A;  2XN5 A;  2GD4 C;  5CDX A;  4G8O A;  4X30 A;  3NDA A;  2H4R A;  1EZX A;  1OVA B;  4RO9 A;  1LQ8 A;  1ANT I;  1T1F A;  4P0F A;  9PAI A;  4AU3 A;  3VVJ A;  3Q02 A;  4AFX A;  2ARR A;  1YXA A;  2QUG A;  3Q03 A;  1DVN A;  2H4P A;  3LW2 A;  2B4X I;  3KCG I;  1C5G A;  2WXY C;  4DY0 A;  3CWL A;  2BEH L;  3STO A;  4PYW A;  1SNG A;  2WXZ A;  1WZ9 A;  2ANT I;  4EB1 L;  4P0O A;  1ATT A;  2RIV A;  4RSQ A;  1K9O I;  1UHG A;  1DZH L;  3UT3 A;  2XN7 A;  4ROA A;  1JMO A;  1OVA A;  1XQG A;  2R9Y A;  3F1S A;  1DVM A;  3H5C A;  2ZV6 A;  2VH4 A;  1JMJ A;  1NQ9 I;  4C49 A;  2HIJ I;  1SR5 A;  4KDS A;  3B9F I;  1IMV A;  2WXW A;  1D5S A;  2WY0 C;  3OZQ A;  1F0C A;  2DUT A;  1QLP A;  2ZNH A;  3ZHA A;  5IO1 A;  4ZK3 A;  2CEO A;  5CDZ A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite