1BWVS

Activated ribulose 1,5-bisphosphate carboxylase/oxygenase (rubisco) complexed with the reaction intermediate analogue 2-carboxyarabinitol 1,5-bisphosphate
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
138
structure length
138
Chain Sequence
VRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGFNLMRQEDKSRSIKYTIHSYESYKPEDERY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of carboxylase reaction-oriented ribulose 1, 5-bisphosphate carboxylase/oxygenase from a thermophilic red alga, Galdieria partita.
pubmed doi rcsb
molecule tags Lyase
molecule keywords PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE)
total genus 32
structure length 138
sequence length 138
chains with identical sequence U, W, Y
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 1998-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 1bwvS00
1UPPI 3ZXWB 1AA1C 3AXMS 1IR21 1UZDC 2V67I 2V68I 1RSCI 4MKVS 1UWAC 2VDHI 1GK8I 1BWVS 2V69I 1WDDS 4RUBS 1RCOC 4F0KB 1UW9C 1AUSS 1RXOC 1EJ7S 1RBOC 2V6AI 2V63I 4HHHS 2YBVB 1IR1S 1BXNI 1RLDS 1IWAB 3RUBS 1RCXC 8RUCI 1RBLI 1UZHC 4F0HB 1RLCS 2VDII 3AXKS 4F0MB 1UPMC 1SVDM
chains in the Genus database with same CATH superfamily
3U4MA 1UPPI 3FPNA 1U63A 2DFXI 1AA1C 3ZXWB 3AXMS 1IR21 1UZDC 2V67I 1MZPA 1DWUA 2V68I 4LQ4A 1RSCI 4QG3A 3U56A 4MKVS 4F9TA 3UMYA 1UWAC 3QOYA 2VDHI 3TG8A 4DFCB 4QVIA 1GK8I 2FHZA 1BWVS 2V69I 1WDDS 4RUBS 1RCOC 4F0KB 1UW9C 1AUSS 1AD2A 1RXOC 5DM70 1EJ7S 1RBOC 1ZHOA 1CJSA 2V6AI 2V63I 4HHHS 2YBVB 1IR1S 1BXNI 1RLDS 1IWAB 4QGBA 4REOA 3RUBS 3ZQJA 1RCXC 8RUCI 2HW8A 1I2AA 1RBLI 1UZHC 4F0HB 1RLCS 2VDII 3AXKS 5DM60 1UPMC 4F0MB 1SVDM
chains in the Genus database with same CATH topology
1UPPI 3ZXWB 1AA1C 3AXMS 1IR21 1UZDC 2V67I 2V68I 1RSCI 4MKVS 1UWAC 2VDHI 1GK8I 1BWVS 2V69I 1WDDS 4RUBS 1RCOC 4F0KB 1UW9C 1AUSS 1RXOC 1EJ7S 1RBOC 2V6AI 2V63I 4HHHS 2YBVB 1IR1S 1BXNI 1RLDS 1IWAB 3RUBS 1RCXC 8RUCI 1RBLI 1UZHC 4F0HB 1RLCS 2VDII 3AXKS 4F0MB 1UPMC 1SVDM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UPP I;  3ZXW B;  1AA1 C;  3AXM S;  1IR2 1;  1UZD C;  2V67 I;  2V68 I;  1RSC I;  4MKV S;  1UWA C;  2VDH I;  1GK8 I;  1BWV S;  2V69 I;  1WDD S;  4RUB S;  1RCO C;  4F0K B;  1UW9 C;  1AUS S;  1RXO C;  1EJ7 S;  1RBO C;  2V6A I;  2V63 I;  4HHH S;  2YBV B;  1IR1 S;  1BXN I;  1RLD S;  1IWA B;  3RUB S;  1RCX C;  8RUC I;  1RBL I;  1UZH C;  4F0H B;  1RLC S;  2VDI I;  3AXK S;  4F0M B;  1UPM C;  1SVD M; 
#chains in the Genus database with same CATH topology
 3U4M A;  1UPP I;  3FPN A;  1U63 A;  2DFX I;  1AA1 C;  3ZXW B;  3AXM S;  1IR2 1;  1UZD C;  2V67 I;  1MZP A;  1DWU A;  2V68 I;  4LQ4 A;  1RSC I;  4QG3 A;  3U56 A;  4MKV S;  4F9T A;  3UMY A;  1UWA C;  3QOY A;  2VDH I;  3TG8 A;  4DFC B;  4QVI A;  1GK8 I;  2FHZ A;  1BWV S;  2V69 I;  1WDD S;  4RUB S;  1RCO C;  4F0K B;  1UW9 C;  1AUS S;  1AD2 A;  1RXO C;  5DM7 0;  1EJ7 S;  1RBO C;  1ZHO A;  1CJS A;  2V6A I;  2V63 I;  4HHH S;  2YBV B;  1IR1 S;  1BXN I;  1RLD S;  1IWA B;  4QGB A;  4REO A;  3RUB S;  3ZQJ A;  1RCX C;  8RUC I;  2HW8 A;  1I2A A;  1RBL I;  1UZH C;  4F0H B;  1RLC S;  2VDI I;  3AXK S;  5DM6 0;  1UPM C;  4F0M B;  1SVD M; 
#chains in the Genus database with same CATH homology
 1UPP I;  3ZXW B;  1AA1 C;  3AXM S;  1IR2 1;  1UZD C;  2V67 I;  2V68 I;  1RSC I;  4MKV S;  1UWA C;  2VDH I;  1GK8 I;  1BWV S;  2V69 I;  1WDD S;  4RUB S;  1RCO C;  4F0K B;  1UW9 C;  1AUS S;  1RXO C;  1EJ7 S;  1RBO C;  2V6A I;  2V63 I;  4HHH S;  2YBV B;  1IR1 S;  1BXN I;  1RLD S;  1IWA B;  3RUB S;  1RCX C;  8RUC I;  1RBL I;  1UZH C;  4F0H B;  1RLC S;  2VDI I;  3AXK S;  4F0M B;  1UPM C;  1SVD M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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