The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
76
|
sequence length |
242
|
structure length |
242
|
Chain Sequence |
MARRGKKYIEASKLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINEVLKKLQEKAA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Crystal Structure of Ribosomal Protein L1 from the Bacterium Aquifex Aeolicus
rcsb |
molecule tags |
Ribosomal protein
|
source organism |
Aquifex aeolicus
|
molecule keywords |
50S ribosomal protein L1
|
total genus |
76
|
structure length |
242
|
sequence length |
242
|
ec nomenclature | |
pdb deposition date | 2011-02-11 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF00687 | Ribosomal_L1 | Ribosomal protein L1p/L10e family |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | 2-Layer Sandwich | Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase | Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold |