1C44A

Sterol carrier protein 2 (scp2) from rabbit
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
123
structure length
123
Chain Sequence
SSAGDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDLLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGKAKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of sterol carrier protein 2 at 1.8 A resolution reveals a hydrophobic tunnel suitable for lipid binding.
pubmed doi rcsb
molecule tags Lipid binding protein
source organism Oryctolagus cuniculus
molecule keywords PROTEIN (STEROL CARRIER PROTEIN 2)
total genus 33
structure length 123
sequence length 123
ec nomenclature ec 2.3.1.176: Propanoyl-CoA C-acyltransferase.
pdb deposition date 1999-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02036 SCP2 SCP-2 sterol transfer family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.10 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A SCP2 sterol-binding domain 1c44A00
1QNDA 5A23A 2QZTA 2CX7A 2YHEA 3UY5A 3BKRA 4AV7A 3R1KA 4MY3A 5EC4A 2CG2A 3SXOA 2OZGA 2CFUA 3CNUA 4PDXA 1WFRA 1IKTA 4QB9A 2I00A 5AJLA 4JD6A 3N7ZA 4JGXA 1PZ4A 4MY0A 3BKSA 2CFZA 2KSHA 4AXHA 2CG3A 2C0LB 2NBNA 3BN8A 5AIJA 4NURA 5EBVA 3RYOA 1C44A 2KSIA 3SXNA 2NBMA 5IV0A 3BDQA 2HV2A 4UEIA
chains in the Genus database with same CATH superfamily
3SSNA 1QNDA 5A23A 2QZTA 2CX7A 2YHEA 3UY5A 3BKRA 4AV7A 3R1KA 4MY3A 5EC4A 2CG2A 3SXOA 2OZGA 2CFUA 3CNUA 4PDXA 1WFRA 1IKTA 4QB9A 2I00A 5AJLA 3SSOA 4JD6A 3BDQA 3N7ZA 1PZ4A 4JGXA 4MY0A 3BKSA 2CFZA 2KSHA 4AXHA 2CG3A 2C0LB 2NSGA 2NBNA 3BN8A 5AIJA 4NURA 3SSMA 4NSSA 5EBVA 3RYOA 1C44A 2KSIA 3SXNA 2NBMA 5IV0A 4ZY7A 2NSFA 2HV2A 4UEIA
chains in the Genus database with same CATH topology
1QNDA 5A23A 2QZTA 2CX7A 2YHEA 3UY5A 3BKRA 4AV7A 3R1KA 4MY3A 5EC4A 2CG2A 3SXOA 2OZGA 2CFUA 3CNUA 4PDXA 1WFRA 1IKTA 4QB9A 2I00A 5AJLA 4JD6A 3N7ZA 4JGXA 1PZ4A 4MY0A 3BKSA 2CFZA 2KSHA 4AXHA 2CG3A 2C0LB 2NBNA 3BN8A 5AIJA 4NURA 5EBVA 3RYOA 1C44A 2KSIA 3SXNA 2NBMA 5IV0A 3BDQA 2HV2A 4UEIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QND A;  5A23 A;  2QZT A;  2CX7 A;  2YHE A;  3UY5 A;  3BKR A;  4AV7 A;  3R1K A;  4MY3 A;  5EC4 A;  2CG2 A;  3SXO A;  2OZG A;  2CFU A;  3CNU A;  4PDX A;  1WFR A;  1IKT A;  4QB9 A;  2I00 A;  5AJL A;  4JD6 A;  3N7Z A;  4JGX A;  1PZ4 A;  4MY0 A;  3BKS A;  2CFZ A;  2KSH A;  4AXH A;  2CG3 A;  2C0L B;  2NBN A;  3BN8 A;  5AIJ A;  4NUR A;  5EBV A;  3RYO A;  1C44 A;  2KSI A;  3SXN A;  2NBM A;  5IV0 A;  3BDQ A;  2HV2 A;  4UEI A; 
#chains in the Genus database with same CATH topology
 3SSN A;  1QND A;  5A23 A;  2QZT A;  2CX7 A;  2YHE A;  3UY5 A;  3BKR A;  4AV7 A;  3R1K A;  4MY3 A;  5EC4 A;  2CG2 A;  3SXO A;  2OZG A;  2CFU A;  3CNU A;  4PDX A;  1WFR A;  1IKT A;  4QB9 A;  2I00 A;  5AJL A;  3SSO A;  4JD6 A;  3BDQ A;  3N7Z A;  1PZ4 A;  4JGX A;  4MY0 A;  3BKS A;  2CFZ A;  2KSH A;  4AXH A;  2CG3 A;  2C0L B;  2NSG A;  2NBN A;  3BN8 A;  5AIJ A;  4NUR A;  3SSM A;  4NSS A;  5EBV A;  3RYO A;  1C44 A;  2KSI A;  3SXN A;  2NBM A;  5IV0 A;  4ZY7 A;  2NSF A;  2HV2 A;  4UEI A; 
#chains in the Genus database with same CATH homology
 1QND A;  5A23 A;  2QZT A;  2CX7 A;  2YHE A;  3UY5 A;  3BKR A;  4AV7 A;  3R1K A;  4MY3 A;  5EC4 A;  2CG2 A;  3SXO A;  2OZG A;  2CFU A;  3CNU A;  4PDX A;  1WFR A;  1IKT A;  4QB9 A;  2I00 A;  5AJL A;  4JD6 A;  3N7Z A;  4JGX A;  1PZ4 A;  4MY0 A;  3BKS A;  2CFZ A;  2KSH A;  4AXH A;  2CG3 A;  2C0L B;  2NBN A;  3BN8 A;  5AIJ A;  4NUR A;  5EBV A;  3RYO A;  1C44 A;  2KSI A;  3SXN A;  2NBM A;  5IV0 A;  3BDQ A;  2HV2 A;  4UEI A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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