4ZY7A

Crystal structure of a mycobacterial protein
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
119
structure length
119
Chain Sequence
DPAKTLEAVSAVADWLRDPQRESPARAQLAEAVRLTARTLAAVAPGASVEVRVPPFVAVQCISGPKHTRGTPPNVVETDARTWLLLATGLLDIADAGASVQMSGSRAAEVAHWLPVVRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a Mycobacterial protein
rcsb
source organism Mycobacterium smegmatis (strain atcc 700084 / mc(2)155)
molecule tags Unknown function
molecule keywords Uncharacterized protein MSMEG_5817
total genus 36
structure length 119
sequence length 119
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17844 SCP_3 Bacterial SCP ortholog
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.40 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A Nonspecific Lipid-transfer Protein; Chain A 4zy7A00
4ZY7A 4NSSA
chains in the Genus database with same CATH superfamily
3BDQA 4ZY7A 2CG2A 2NSGA 3CNUA 2I00A 2CX7A 2YHEA 4JD6A 4NSSA 4AV7A 5A23A 2CG3A 2OZGA 4JGXA 2CFZA 5AJLA 2C0LB 4NURA 4UEIA 5EC4A 3BKRA 2CFUA 4AXHA 5AIJA 3UY5A 2NBNA 5EBVA 2HV2A 4MY0A 2NSFA 5IV0A 4QB9A 1IKTA 3R1KA 2QZTA 2KSHA 1C44A 3SSNA 2KSIA 1WFRA 3BN8A 3SXOA 3SSMA 1QNDA 2NBMA 3SXNA 3BKSA 4MY3A 4PDXA 3RYOA 3SSOA 3N7ZA 1PZ4A
chains in the Genus database with same CATH topology
4ZY7A 3SSMA 2NSGA 2NSFA 3SSOA 3SSNA 4NSSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZY7 A;  4NSS A; 
#chains in the Genus database with same CATH topology
 3BDQ A;  4ZY7 A;  2CG2 A;  2NSG A;  3CNU A;  2I00 A;  2CX7 A;  2YHE A;  4JD6 A;  4NSS A;  4AV7 A;  5A23 A;  2CG3 A;  2OZG A;  4JGX A;  2CFZ A;  5AJL A;  2C0L B;  4NUR A;  4UEI A;  5EC4 A;  3BKR A;  2CFU A;  4AXH A;  5AIJ A;  3UY5 A;  2NBN A;  5EBV A;  2HV2 A;  4MY0 A;  2NSF A;  5IV0 A;  4QB9 A;  1IKT A;  3R1K A;  2QZT A;  2KSH A;  1C44 A;  3SSN A;  2KSI A;  1WFR A;  3BN8 A;  3SXO A;  3SSM A;  1QND A;  2NBM A;  3SXN A;  3BKS A;  4MY3 A;  4PDX A;  3RYO A;  3SSO A;  3N7Z A;  1PZ4 A; 
#chains in the Genus database with same CATH homology
 4ZY7 A;  3SSM A;  2NSG A;  2NSF A;  3SSO A;  3SSN A;  4NSS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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