4ZY7A

Crystal structure of a mycobacterial protein
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
119
structure length
119
Chain Sequence
b'DPAKTLEAVSAVADWLRDPQRESPARAQLAEAVRLTARTLAAVAPGASVEVRVPPFVAVQCISGPKHTRGTPPNVVETDARTWLLLATGLLDIADAGASVQMSGSRAAEVAHWLPVVRI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Uncharacterized protein MSMEG_5817
publication title Crystal structure of a Mycobacterial protein
rcsb
source organism Mycobacterium smegmatis (strain atcc 700084 / mc(2)155)
molecule tags Unknown function
total genus 36
structure length 119
sequence length 119
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17844 SCP_3 Bacterial SCP ortholog
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.40 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A Nonspecific Lipid-transfer Protein; Chain A 4zy7A00
4ZY7A 4NSSA
chains in the Genus database with same CATH superfamily
2CG3A 5EBVA 2NBNA 4MY3A 4AXHA 4JD6A 3SXNA 5AJLA 2NSGA 2CX7A 1PZ4A 3CNUA 3N7ZA 3R1KA 2OZGA 5AIJA 2HV2A 1QNDA 1WFRA 2I00A 1IKTA 2CG2A 3BKSA 3SSMA 4ZY7A 3BN8A 3SXOA 2YHEA 3BDQA 4MY0A 2C0LB 4NURA 3SSOA 4NSSA 5EC4A 3BKRA 5A23A 4JGXA 5IV0A 3RYOA 2QZTA 4AV7A 2CFZA 2KSIA 2NBMA 4PDXA 3SSNA 2NSFA 2CFUA 4QB9A 4UEIA 1C44A 3UY5A 2KSHA
chains in the Genus database with same CATH topology
2NSGA 4ZY7A 3SSNA 2NSFA 3SSOA 4NSSA 3SSMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZY7 A;  4NSS A; 
#chains in the Genus database with same CATH topology
 2CG3 A;  5EBV A;  2NBN A;  4MY3 A;  4AXH A;  4JD6 A;  3SXN A;  5AJL A;  2NSG A;  2CX7 A;  1PZ4 A;  3CNU A;  3N7Z A;  3R1K A;  2OZG A;  5AIJ A;  2HV2 A;  1QND A;  1WFR A;  2I00 A;  1IKT A;  2CG2 A;  3BKS A;  3SSM A;  4ZY7 A;  3BN8 A;  3SXO A;  2YHE A;  3BDQ A;  4MY0 A;  2C0L B;  4NUR A;  3SSO A;  4NSS A;  5EC4 A;  3BKR A;  5A23 A;  4JGX A;  5IV0 A;  3RYO A;  2QZT A;  4AV7 A;  2CFZ A;  2KSI A;  2NBM A;  4PDX A;  3SSN A;  2NSF A;  2CFU A;  4QB9 A;  4UEI A;  1C44 A;  3UY5 A;  2KSH A; 
#chains in the Genus database with same CATH homology
 2NSG A;  4ZY7 A;  3SSN A;  2NSF A;  3SSO A;  4NSS A;  3SSM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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