4ZY7A

Crystal structure of a mycobacterial protein
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
119
structure length
119
Chain Sequence
DPAKTLEAVSAVADWLRDPQRESPARAQLAEAVRLTARTLAAVAPGASVEVRVPPFVAVQCISGPKHTRGTPPNVVETDARTWLLLATGLLDIADAGASVQMSGSRAAEVAHWLPVVRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a Mycobacterial protein
rcsb
source organism Mycobacterium smegmatis (strain atcc 700084 / mc(2)155)
molecule tags Unknown function
molecule keywords Uncharacterized protein MSMEG_5817
total genus 36
structure length 119
sequence length 119
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17844 SCP_3 Bacterial SCP ortholog
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.40 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A Nonspecific Lipid-transfer Protein; Chain A 4zy7A00
4ZY7A 4NSSA
chains in the Genus database with same CATH superfamily
4JGXA 1PZ4A 2KSHA 4MY0A 4AXHA 2CX7A 4NURA 3CNUA 2HV2A 2CG2A 2CFZA 4QB9A 1QNDA 2CFUA 2NBMA 2YHEA 2C0LB 3R1KA 3RYOA 3BDQA 1C44A 5EC4A 2CG3A 1WFRA 3SSOA 5AIJA 2NBNA 3SSMA 4UEIA 2KSIA 4MY3A 2NSFA 2OZGA 4NSSA 5AJLA 2NSGA 4PDXA 3SXOA 4AV7A 1IKTA 3SXNA 5A23A 5IV0A 2I00A 5EBVA 3N7ZA 3BKSA 3BKRA 4ZY7A 3UY5A 3BN8A 4JD6A 3SSNA 2QZTA
chains in the Genus database with same CATH topology
2NSGA 3SSOA 3SSMA 4ZY7A 2NSFA 3SSNA 4NSSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZY7 A;  4NSS A; 
#chains in the Genus database with same CATH topology
 4JGX A;  1PZ4 A;  2KSH A;  4MY0 A;  4AXH A;  2CX7 A;  4NUR A;  3CNU A;  2HV2 A;  2CG2 A;  2CFZ A;  4QB9 A;  1QND A;  2CFU A;  2NBM A;  2YHE A;  2C0L B;  3R1K A;  3RYO A;  3BDQ A;  1C44 A;  5EC4 A;  2CG3 A;  1WFR A;  3SSO A;  5AIJ A;  2NBN A;  3SSM A;  4UEI A;  2KSI A;  4MY3 A;  2NSF A;  2OZG A;  4NSS A;  5AJL A;  2NSG A;  4PDX A;  3SXO A;  4AV7 A;  1IKT A;  3SXN A;  5A23 A;  5IV0 A;  2I00 A;  5EBV A;  3N7Z A;  3BKS A;  3BKR A;  4ZY7 A;  3UY5 A;  3BN8 A;  4JD6 A;  3SSN A;  2QZT A; 
#chains in the Genus database with same CATH homology
 2NSG A;  3SSO A;  3SSM A;  4ZY7 A;  2NSF A;  3SSN A;  4NSS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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