4ZY7A

Crystal structure of a mycobacterial protein
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
119
structure length
119
Chain Sequence
DPAKTLEAVSAVADWLRDPQRESPARAQLAEAVRLTARTLAAVAPGASVEVRVPPFVAVQCISGPKHTRGTPPNVVETDARTWLLLATGLLDIADAGASVQMSGSRAAEVAHWLPVVRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Uncharacterized protein MSMEG_5817
publication title Crystal structure of a Mycobacterial protein
rcsb
source organism Mycobacterium smegmatis (strain atcc 700084 / mc(2)155)
molecule tags Unknown function
total genus 36
structure length 119
sequence length 119
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17844 SCP_3 Bacterial SCP ortholog
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.40 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A Nonspecific Lipid-transfer Protein; Chain A 4zy7A00
4ZY7A 4NSSA
chains in the Genus database with same CATH superfamily
2NSGA 3R1KA 2CX7A 2I00A 3SXNA 3N7ZA 3SXOA 2QZTA 2KSIA 1WFRA 4MY3A 4JD6A 4NSSA 4NURA 3SSMA 5IV0A 3BKSA 5A23A 5EC4A 1IKTA 1PZ4A 3CNUA 2CFZA 4AV7A 3BDQA 3RYOA 3BKRA 5AJLA 1C44A 3SSNA 5AIJA 3BN8A 3SSOA 2CG2A 4PDXA 5EBVA 2C0LB 2NBNA 4QB9A 2KSHA 4UEIA 2HV2A 2YHEA 2CFUA 2NSFA 4ZY7A 2CG3A 4AXHA 1QNDA 2NBMA 4MY0A 2OZGA 3UY5A 4JGXA
chains in the Genus database with same CATH topology
2NSGA 3SSMA 2NSFA 4ZY7A 3SSNA 3SSOA 4NSSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZY7 A;  4NSS A; 
#chains in the Genus database with same CATH topology
 2NSG A;  3R1K A;  2CX7 A;  2I00 A;  3SXN A;  3N7Z A;  3SXO A;  2QZT A;  2KSI A;  1WFR A;  4MY3 A;  4JD6 A;  4NSS A;  4NUR A;  3SSM A;  5IV0 A;  3BKS A;  5A23 A;  5EC4 A;  1IKT A;  1PZ4 A;  3CNU A;  2CFZ A;  4AV7 A;  3BDQ A;  3RYO A;  3BKR A;  5AJL A;  1C44 A;  3SSN A;  5AIJ A;  3BN8 A;  3SSO A;  2CG2 A;  4PDX A;  5EBV A;  2C0L B;  2NBN A;  4QB9 A;  2KSH A;  4UEI A;  2HV2 A;  2YHE A;  2CFU A;  2NSF A;  4ZY7 A;  2CG3 A;  4AXH A;  1QND A;  2NBM A;  4MY0 A;  2OZG A;  3UY5 A;  4JGX A; 
#chains in the Genus database with same CATH homology
 2NSG A;  3SSM A;  2NSF A;  4ZY7 A;  3SSN A;  3SSO A;  4NSS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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