2KSIA

Solution nmr structure of sterol carrier protein - 2 from aedes aegypti (aescp-2) complex with c16 fatty acid (palmitate)
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
110
structure length
110
Chain Sequence
MSLKSDEVFAKIAKRLESIDPANRQVEHVYKFRITQGGKVVKNWVMDLKNVKLVESDDAAEATLTMEDDIMFAIGTGALPAKEAMAQDKMEVDGQVELIFLLEPFIASLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid binding protein
source organism Aedes aegypti
publication title Solution NMR structure of Sterol Carrier Protein - 2 from Aedes aegypti (AeSCP-2) complex with C16 fatty acid (palmitate)
rcsb
molecule keywords Sterol carrier protein 2
total genus 20
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2010-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02036 SCP2 SCP-2 sterol transfer family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.10 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A SCP2 sterol-binding domain 2ksiA00
3BKRA 4PDXA 2CFUA 2CG2A 2OZGA 5AJLA 4MY0A 5AIJA 3BN8A 5EC4A 2QZTA 2KSHA 3BDQA 4AV7A 4AXHA 2HV2A 3RYOA 1QNDA 4QB9A 3BKSA 2CG3A 4JGXA 3UY5A 2I00A 1PZ4A 2NBMA 2NBNA 1C44A 5A23A 2KSIA 5IV0A 3CNUA 5EBVA 2CX7A 3SXOA 3SXNA 1IKTA 4MY3A 4UEIA 1WFRA 2YHEA 3R1KA 3N7ZA 4JD6A 4NURA 2C0LB 2CFZA
chains in the Genus database with same CATH superfamily
3BKRA 4PDXA 4NSSA 2CFUA 2CG2A 2OZGA 5AJLA 4MY0A 5AIJA 3BN8A 5EC4A 2KSHA 2QZTA 3BDQA 4AV7A 4AXHA 4ZY7A 2HV2A 3RYOA 1QNDA 4QB9A 3BKSA 2CG3A 4JGXA 3UY5A 2I00A 3SSOA 1PZ4A 3SSNA 2NBMA 2NBNA 1C44A 5A23A 2KSIA 5IV0A 3CNUA 5EBVA 2CX7A 2NSFA 3SXOA 3SXNA 1IKTA 4MY3A 4UEIA 1WFRA 2NSGA 2YHEA 3R1KA 3SSMA 3N7ZA 4JD6A 4NURA 2C0LB 2CFZA
chains in the Genus database with same CATH topology
3BKRA 4PDXA 2CFUA 2CG2A 2OZGA 5AJLA 4MY0A 5AIJA 3BN8A 5EC4A 2QZTA 2KSHA 3BDQA 4AV7A 4AXHA 2HV2A 3RYOA 1QNDA 4QB9A 3BKSA 2CG3A 4JGXA 3UY5A 2I00A 1PZ4A 2NBMA 2NBNA 1C44A 5A23A 2KSIA 5IV0A 3CNUA 5EBVA 2CX7A 3SXOA 3SXNA 1IKTA 4MY3A 4UEIA 1WFRA 2YHEA 3R1KA 3N7ZA 4JD6A 4NURA 2C0LB 2CFZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BKR A;  4PDX A;  2CFU A;  2CG2 A;  2OZG A;  5AJL A;  4MY0 A;  5AIJ A;  3BN8 A;  5EC4 A;  2QZT A;  2KSH A;  3BDQ A;  4AV7 A;  4AXH A;  2HV2 A;  3RYO A;  1QND A;  4QB9 A;  3BKS A;  2CG3 A;  4JGX A;  3UY5 A;  2I00 A;  1PZ4 A;  2NBM A;  2NBN A;  1C44 A;  5A23 A;  2KSI A;  5IV0 A;  3CNU A;  5EBV A;  2CX7 A;  3SXO A;  3SXN A;  1IKT A;  4MY3 A;  4UEI A;  1WFR A;  2YHE A;  3R1K A;  3N7Z A;  4JD6 A;  4NUR A;  2C0L B;  2CFZ A; 
#chains in the Genus database with same CATH topology
 3BKR A;  4PDX A;  4NSS A;  2CFU A;  2CG2 A;  2OZG A;  5AJL A;  4MY0 A;  5AIJ A;  3BN8 A;  5EC4 A;  2KSH A;  2QZT A;  3BDQ A;  4AV7 A;  4AXH A;  4ZY7 A;  2HV2 A;  3RYO A;  1QND A;  4QB9 A;  3BKS A;  2CG3 A;  4JGX A;  3UY5 A;  2I00 A;  3SSO A;  1PZ4 A;  3SSN A;  2NBM A;  2NBN A;  1C44 A;  5A23 A;  2KSI A;  5IV0 A;  3CNU A;  5EBV A;  2CX7 A;  2NSF A;  3SXO A;  3SXN A;  1IKT A;  4MY3 A;  4UEI A;  1WFR A;  2NSG A;  2YHE A;  3R1K A;  3SSM A;  3N7Z A;  4JD6 A;  4NUR A;  2C0L B;  2CFZ A; 
#chains in the Genus database with same CATH homology
 3BKR A;  4PDX A;  2CFU A;  2CG2 A;  2OZG A;  5AJL A;  4MY0 A;  5AIJ A;  3BN8 A;  5EC4 A;  2QZT A;  2KSH A;  3BDQ A;  4AV7 A;  4AXH A;  2HV2 A;  3RYO A;  1QND A;  4QB9 A;  3BKS A;  2CG3 A;  4JGX A;  3UY5 A;  2I00 A;  1PZ4 A;  2NBM A;  2NBN A;  1C44 A;  5A23 A;  2KSI A;  5IV0 A;  3CNU A;  5EBV A;  2CX7 A;  3SXO A;  3SXN A;  1IKT A;  4MY3 A;  4UEI A;  1WFR A;  2YHE A;  3R1K A;  3N7Z A;  4JD6 A;  4NUR A;  2C0L B;  2CFZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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