1PZ4A

The structural determination of an insect (mosquito) sterol carrier protein-2 with a ligand bound c16 fatty acid at 1.35 a resolution
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
113
structure length
113
Chain Sequence
GIRMSLKSDEVFAKIAKRLESIDPANRQVEHVYKFRITQGGKVVKNWVMDLKNVKLVESDDAAEATLTMEDDIMFAIGTGALPAKEAMAQDKMEVDGQVELIFLLEPFIASLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structural Determination of an Insect Sterol Carrier Protein-2 with a Ligand-bound C16 Fatty Acid at 1.35A Resolution
pubmed doi rcsb
source organism Aedes aegypti
molecule tags Lipid binding protein
molecule keywords sterol carrier protein 2
total genus 34
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2003-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02036 SCP2 SCP-2 sterol transfer family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.10 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A SCP2 sterol-binding domain 1pz4A00
4QB9A 3SXOA 1IKTA 3CNUA 2CX7A 1QNDA 4MY0A 4MY3A 5EC4A 3BN8A 4NURA 4UEIA 5EBVA 1C44A 2CFUA 4PDXA 3BDQA 3SXNA 4AV7A 5A23A 2YHEA 1WFRA 5AIJA 2KSIA 2C0LB 3UY5A 2CFZA 2CG3A 3BKRA 4JGXA 3RYOA 2QZTA 4JD6A 5AJLA 5IV0A 2HV2A 2KSHA 2CG2A 2OZGA 4AXHA 3N7ZA 2NBMA 3BKSA 2I00A 3R1KA 1PZ4A 2NBNA
chains in the Genus database with same CATH superfamily
4QB9A 3SXOA 3SSNA 1IKTA 3SSOA 3CNUA 2CX7A 4NSSA 1QNDA 4MY0A 4MY3A 5EC4A 3BN8A 4NURA 4UEIA 5EBVA 1C44A 2CFUA 4PDXA 3BDQA 3SXNA 4AV7A 5A23A 2YHEA 3SSMA 1WFRA 5AIJA 2KSIA 2C0LB 3UY5A 2CFZA 2CG3A 3BKRA 4JGXA 3RYOA 2QZTA 4JD6A 5AJLA 5IV0A 2HV2A 2KSHA 2CG2A 2OZGA 4AXHA 3N7ZA 2NSFA 2NBMA 3BKSA 2I00A 3R1KA 1PZ4A 4ZY7A 2NSGA 2NBNA
chains in the Genus database with same CATH topology
4QB9A 3SXOA 1IKTA 3CNUA 2CX7A 1QNDA 4MY0A 4MY3A 5EC4A 3BN8A 4NURA 4UEIA 5EBVA 1C44A 2CFUA 4PDXA 3BDQA 3SXNA 4AV7A 5A23A 2YHEA 1WFRA 5AIJA 2KSIA 2C0LB 3UY5A 2CFZA 2CG3A 3BKRA 4JGXA 3RYOA 2QZTA 4JD6A 5AJLA 5IV0A 2HV2A 2KSHA 2CG2A 2OZGA 4AXHA 3N7ZA 2NBMA 3BKSA 2I00A 3R1KA 1PZ4A 2NBNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QB9 A;  3SXO A;  1IKT A;  3CNU A;  2CX7 A;  1QND A;  4MY0 A;  4MY3 A;  5EC4 A;  3BN8 A;  4NUR A;  4UEI A;  5EBV A;  1C44 A;  2CFU A;  4PDX A;  3BDQ A;  3SXN A;  4AV7 A;  5A23 A;  2YHE A;  1WFR A;  5AIJ A;  2KSI A;  2C0L B;  3UY5 A;  2CFZ A;  2CG3 A;  3BKR A;  4JGX A;  3RYO A;  2QZT A;  4JD6 A;  5AJL A;  5IV0 A;  2HV2 A;  2KSH A;  2CG2 A;  2OZG A;  4AXH A;  3N7Z A;  2NBM A;  3BKS A;  2I00 A;  3R1K A;  1PZ4 A;  2NBN A; 
#chains in the Genus database with same CATH topology
 4QB9 A;  3SXO A;  3SSN A;  1IKT A;  3SSO A;  3CNU A;  2CX7 A;  4NSS A;  1QND A;  4MY0 A;  4MY3 A;  5EC4 A;  3BN8 A;  4NUR A;  4UEI A;  5EBV A;  1C44 A;  2CFU A;  4PDX A;  3BDQ A;  3SXN A;  4AV7 A;  5A23 A;  2YHE A;  3SSM A;  1WFR A;  5AIJ A;  2KSI A;  2C0L B;  3UY5 A;  2CFZ A;  2CG3 A;  3BKR A;  4JGX A;  3RYO A;  2QZT A;  4JD6 A;  5AJL A;  5IV0 A;  2HV2 A;  2KSH A;  2CG2 A;  2OZG A;  4AXH A;  3N7Z A;  2NSF A;  2NBM A;  3BKS A;  2I00 A;  3R1K A;  1PZ4 A;  4ZY7 A;  2NSG A;  2NBN A; 
#chains in the Genus database with same CATH homology
 4QB9 A;  3SXO A;  1IKT A;  3CNU A;  2CX7 A;  1QND A;  4MY0 A;  4MY3 A;  5EC4 A;  3BN8 A;  4NUR A;  4UEI A;  5EBV A;  1C44 A;  2CFU A;  4PDX A;  3BDQ A;  3SXN A;  4AV7 A;  5A23 A;  2YHE A;  1WFR A;  5AIJ A;  2KSI A;  2C0L B;  3UY5 A;  2CFZ A;  2CG3 A;  3BKR A;  4JGX A;  3RYO A;  2QZT A;  4JD6 A;  5AJL A;  5IV0 A;  2HV2 A;  2KSH A;  2CG2 A;  2OZG A;  4AXH A;  3N7Z A;  2NBM A;  3BKS A;  2I00 A;  3R1K A;  1PZ4 A;  2NBN A; 
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