4NSSA

A structural and functional investigation of a novel protein from mycobacterium smegmatis implicated in mycobacterial macrophage survivability
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
120
structure length
115
Chain Sequence
PAKTLEAVSAVADWLRDPQRESPARAQLAEAVRLTARTLAAVAPGASVEVRVPPFVAVQCISGGTPPNVVETDARTWLLLATGLLDIADAGASVQMSGSRAAEVAHWLPVVRIDP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A structural and functional investigation of a novel protein from Mycobacterium smegmatis implicated in mycobacterial macrophage survivability.
pubmed doi rcsb
source organism Mycobacterium smegmatis
molecule tags Unknown function
molecule keywords Mycobacterial protein
total genus 33
structure length 115
sequence length 120
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17844 SCP_3 Bacterial SCP ortholog
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.40 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A Nonspecific Lipid-transfer Protein; Chain A 4nssA00
4NSSA 4ZY7A
chains in the Genus database with same CATH superfamily
4NURA 5IV0A 1QNDA 5AIJA 2NBMA 2HV2A 3SXOA 1IKTA 2NSFA 1PZ4A 4MY3A 4NSSA 2CFZA 4MY0A 2KSHA 5AJLA 3BKSA 3UY5A 4AV7A 2OZGA 3SXNA 4QB9A 4UEIA 4AXHA 5A23A 5EBVA 4JGXA 3BKRA 3RYOA 3R1KA 3SSOA 2YHEA 4PDXA 2I00A 1WFRA 2NBNA 3BDQA 2CG3A 1C44A 2KSIA 2NSGA 3N7ZA 5EC4A 4ZY7A 2CFUA 3BN8A 3CNUA 3SSNA 3SSMA 2QZTA 2CG2A 4JD6A 2CX7A 2C0LB
chains in the Genus database with same CATH topology
2NSGA 3SSOA 4ZY7A 3SSNA 3SSMA 2NSFA 4NSSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NSS A;  4ZY7 A; 
#chains in the Genus database with same CATH topology
 4NUR A;  5IV0 A;  1QND A;  5AIJ A;  2NBM A;  2HV2 A;  3SXO A;  1IKT A;  2NSF A;  1PZ4 A;  4MY3 A;  4NSS A;  2CFZ A;  4MY0 A;  2KSH A;  5AJL A;  3BKS A;  3UY5 A;  4AV7 A;  2OZG A;  3SXN A;  4QB9 A;  4UEI A;  4AXH A;  5A23 A;  5EBV A;  4JGX A;  3BKR A;  3RYO A;  3R1K A;  3SSO A;  2YHE A;  4PDX A;  2I00 A;  1WFR A;  2NBN A;  3BDQ A;  2CG3 A;  1C44 A;  2KSI A;  2NSG A;  3N7Z A;  5EC4 A;  4ZY7 A;  2CFU A;  3BN8 A;  3CNU A;  3SSN A;  3SSM A;  2QZT A;  2CG2 A;  4JD6 A;  2CX7 A;  2C0L B; 
#chains in the Genus database with same CATH homology
 2NSG A;  3SSO A;  4ZY7 A;  3SSN A;  3SSM A;  2NSF A;  4NSS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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