4NSSA

A structural and functional investigation of a novel protein from mycobacterium smegmatis implicated in mycobacterial macrophage survivability
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
120
structure length
115
Chain Sequence
PAKTLEAVSAVADWLRDPQRESPARAQLAEAVRLTARTLAAVAPGASVEVRVPPFVAVQCISGGTPPNVVETDARTWLLLATGLLDIADAGASVQMSGSRAAEVAHWLPVVRIDP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Mycobacterial protein
publication title A structural and functional investigation of a novel protein from Mycobacterium smegmatis implicated in mycobacterial macrophage survivability.
pubmed doi rcsb
source organism Mycobacterium smegmatis
molecule tags Unknown function
total genus 33
structure length 115
sequence length 120
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17844 SCP_3 Bacterial SCP ortholog
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.40 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A Nonspecific Lipid-transfer Protein; Chain A 4nssA00
4NSSA 4ZY7A
chains in the Genus database with same CATH superfamily
4JGXA 3BDQA 4AXHA 2CFZA 3N7ZA 4MY3A 4NSSA 1C44A 3UY5A 3RYOA 2CX7A 2I00A 2CFUA 2OZGA 2NSFA 4AV7A 4NURA 5EC4A 4QB9A 2KSHA 4MY0A 5A23A 3BKRA 1WFRA 5AIJA 3BKSA 2HV2A 2KSIA 3BN8A 2NBMA 1IKTA 3SSOA 3SSNA 3SXNA 2QZTA 5EBVA 5IV0A 3SSMA 4UEIA 5AJLA 1QNDA 2CG2A 3SXOA 4ZY7A 3R1KA 2YHEA 4PDXA 2NSGA 2NBNA 2CG3A 4JD6A 1PZ4A 2C0LB 3CNUA
chains in the Genus database with same CATH topology
3SSNA 2NSGA 4NSSA 3SSMA 2NSFA 4ZY7A 3SSOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NSS A;  4ZY7 A; 
#chains in the Genus database with same CATH topology
 4JGX A;  3BDQ A;  4AXH A;  2CFZ A;  3N7Z A;  4MY3 A;  4NSS A;  1C44 A;  3UY5 A;  3RYO A;  2CX7 A;  2I00 A;  2CFU A;  2OZG A;  2NSF A;  4AV7 A;  4NUR A;  5EC4 A;  4QB9 A;  2KSH A;  4MY0 A;  5A23 A;  3BKR A;  1WFR A;  5AIJ A;  3BKS A;  2HV2 A;  2KSI A;  3BN8 A;  2NBM A;  1IKT A;  3SSO A;  3SSN A;  3SXN A;  2QZT A;  5EBV A;  5IV0 A;  3SSM A;  4UEI A;  5AJL A;  1QND A;  2CG2 A;  3SXO A;  4ZY7 A;  3R1K A;  2YHE A;  4PDX A;  2NSG A;  2NBN A;  2CG3 A;  4JD6 A;  1PZ4 A;  2C0L B;  3CNU A; 
#chains in the Genus database with same CATH homology
 3SSN A;  2NSG A;  4NSS A;  3SSM A;  2NSF A;  4ZY7 A;  3SSO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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