4NSSA

A structural and functional investigation of a novel protein from mycobacterium smegmatis implicated in mycobacterial macrophage survivability
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
120
structure length
115
Chain Sequence
PAKTLEAVSAVADWLRDPQRESPARAQLAEAVRLTARTLAAVAPGASVEVRVPPFVAVQCISGGTPPNVVETDARTWLLLATGLLDIADAGASVQMSGSRAAEVAHWLPVVRIDP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Mycobacterial protein
publication title A structural and functional investigation of a novel protein from Mycobacterium smegmatis implicated in mycobacterial macrophage survivability.
pubmed doi rcsb
source organism Mycobacterium smegmatis
total genus 33
structure length 115
sequence length 120
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17844 SCP_3 Bacterial SCP ortholog
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.40 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A Nonspecific Lipid-transfer Protein; Chain A 4nssA00
4NSSA 4ZY7A
chains in the Genus database with same CATH superfamily
1IKTA 2I00A 2CFZA 3BKRA 2YHEA 3BN8A 5AJLA 2KSHA 4MY0A 2HV2A 5AIJA 3CNUA 1WFRA 3RYOA 3SSMA 2C0LB 2KSIA 3SSNA 5A23A 3N7ZA 1C44A 5EBVA 2OZGA 4NURA 4JD6A 2CFUA 2NBMA 4NSSA 3BKSA 1QNDA 4QB9A 3R1KA 2QZTA 4PDXA 3BDQA 3SSOA 2CG2A 3SXNA 2CX7A 4UEIA 2NSGA 3UY5A 2CG3A 4AV7A 4JGXA 4ZY7A 5IV0A 2NBNA 3SXOA 1PZ4A 5EC4A 4MY3A 4AXHA 2NSFA
chains in the Genus database with same CATH topology
2NSGA 3SSMA 4NSSA 3SSNA 4ZY7A 3SSOA 2NSFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NSS A;  4ZY7 A; 
#chains in the Genus database with same CATH topology
 1IKT A;  2I00 A;  2CFZ A;  3BKR A;  2YHE A;  3BN8 A;  5AJL A;  2KSH A;  4MY0 A;  2HV2 A;  5AIJ A;  3CNU A;  1WFR A;  3RYO A;  3SSM A;  2C0L B;  2KSI A;  3SSN A;  5A23 A;  3N7Z A;  1C44 A;  5EBV A;  2OZG A;  4NUR A;  4JD6 A;  2CFU A;  2NBM A;  4NSS A;  3BKS A;  1QND A;  4QB9 A;  3R1K A;  2QZT A;  4PDX A;  3BDQ A;  3SSO A;  2CG2 A;  3SXN A;  2CX7 A;  4UEI A;  2NSG A;  3UY5 A;  2CG3 A;  4AV7 A;  4JGX A;  4ZY7 A;  5IV0 A;  2NBN A;  3SXO A;  1PZ4 A;  5EC4 A;  4MY3 A;  4AXH A;  2NSF A; 
#chains in the Genus database with same CATH homology
 2NSG A;  3SSM A;  4NSS A;  3SSN A;  4ZY7 A;  3SSO A;  2NSF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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