4NSSA

A structural and functional investigation of a novel protein from mycobacterium smegmatis implicated in mycobacterial macrophage survivability
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
120
structure length
115
Chain Sequence
b'PAKTLEAVSAVADWLRDPQRESPARAQLAEAVRLTARTLAAVAPGASVEVRVPPFVAVQCISGGTPPNVVETDARTWLLLATGLLDIADAGASVQMSGSRAAEVAHWLPVVRIDP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Mycobacterial protein
publication title A structural and functional investigation of a novel protein from Mycobacterium smegmatis implicated in mycobacterial macrophage survivability.
pubmed doi rcsb
source organism Mycobacterium smegmatis
molecule tags Unknown function
total genus 33
structure length 115
sequence length 120
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17844 SCP_3 Bacterial SCP ortholog
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.40 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A Nonspecific Lipid-transfer Protein; Chain A 4nssA00
4NSSA 4ZY7A
chains in the Genus database with same CATH superfamily
4PDXA 1WFRA 1C44A 1IKTA 4MY0A 4MY3A 3BN8A 2QZTA 4NURA 1QNDA 2NSGA 2KSHA 4NSSA 2NSFA 2KSIA 4AV7A 4ZY7A 2CG3A 5AIJA 2NBMA 3CNUA 3SSNA 2CFZA 2I00A 3BDQA 5AJLA 5IV0A 2CG2A 3SXOA 3BKRA 3SXNA 5EC4A 5A23A 3SSOA 2YHEA 3RYOA 4JD6A 3R1KA 4AXHA 2NBNA 2C0LB 1PZ4A 2CFUA 4QB9A 3N7ZA 4JGXA 3SSMA 3UY5A 5EBVA 4UEIA 3BKSA 2OZGA 2CX7A 2HV2A
chains in the Genus database with same CATH topology
3SSMA 3SSNA 3SSOA 2NSGA 4NSSA 4ZY7A 2NSFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NSS A;  4ZY7 A; 
#chains in the Genus database with same CATH topology
 4PDX A;  1WFR A;  1C44 A;  1IKT A;  4MY0 A;  4MY3 A;  3BN8 A;  2QZT A;  4NUR A;  1QND A;  2NSG A;  2KSH A;  4NSS A;  2NSF A;  2KSI A;  4AV7 A;  4ZY7 A;  2CG3 A;  5AIJ A;  2NBM A;  3CNU A;  3SSN A;  2CFZ A;  2I00 A;  3BDQ A;  5AJL A;  5IV0 A;  2CG2 A;  3SXO A;  3BKR A;  3SXN A;  5EC4 A;  5A23 A;  3SSO A;  2YHE A;  3RYO A;  4JD6 A;  3R1K A;  4AXH A;  2NBN A;  2C0L B;  1PZ4 A;  2CFU A;  4QB9 A;  3N7Z A;  4JGX A;  3SSM A;  3UY5 A;  5EBV A;  4UEI A;  3BKS A;  2OZG A;  2CX7 A;  2HV2 A; 
#chains in the Genus database with same CATH homology
 3SSM A;  3SSN A;  3SSO A;  2NSG A;  4NSS A;  4ZY7 A;  2NSF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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