1ES8A

Crystal structure of free bglii
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
223
structure length
196
Chain Sequence
MKIDITDYNHADEILNPQLWKEIEETLLKMPLHVKASSLIFDPVGTNQYIKDELVPKHWKNNIPIPKRFDFLGTDIDFGKRDTLVEVQFSNYPFLLNNTVRSELFHKGMKVAIIITKGHMFPASNSSLYYEQAQNQLNSLAEYNVFDVPIRLVGLIEDFETDIDIVSTTYADKSRTITKRDTVKGKVIDRGTIVTY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Bacillus subtilis
publication title Structure of free BglII reveals an unprecedented scissor-like motion for opening an endonuclease.
pubmed doi rcsb
molecule keywords RESTRICTION ENDONUCLEASE BGLII
total genus 57
structure length 196
sequence length 223
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2000-04-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09195 Endonuc-BglII Restriction endonuclease BglII
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.20 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 1es8A00
1DFMA 1SDOA 2BAMA 3BAMA 2P0JA 1ESGA 1D2IA 1BAMA 1VRRA 1ES8A 3ODHA 1BHMA
chains in the Genus database with same CATH superfamily
5JHTA 3WVPA 3BM3A 4E5LA 3MQ6A 4NFZA 1M0DA 4AVGA 2PFJA 4E5GA 5D9JA 2FOKA 5CGVA 4ZHZA 4R28A 3N78A 4F0QA 3EBJA 3WVKA 1ES8A 4F0PA 1DFMA 5DBSA 3WVGA 5DESA 1ESGA 1BAMA 3CAEA 2XI5A 2FQZA 4YYLA 2GB7A 2XI7A 4CGSA 4CHCA 3DW9A 2P14A 2E52A 1M0IA 4E5EA 4AVLA 4OC8A 1FOKA 3V20A 2P0JA 3MQYA 3A4KA 3HW6A 1BHMA 4AVQA 1DC1A 5JHVA 5CCYA 5FDGA 3HW3A 5DEBA 3WVIA 5D8UA 1D2IA 4ZQQA 2EWFA 4AWKA 3DPGA 2BAMA 5D4GA 5D2OA 3V1ZA 4E5JA 1KNVA 4E5FA 5D42A 5CZNA 4E5HA 4AWGA 5I13A 3ODHA 4AWMA 4CGXA 4AWFA 4AWHA 3HW4A 3WVHA 4E5IA 3HW5A 5CL0A 1VRRA 1FZRA 3BAMA 5FDDA 3N7BA 3DVOA 1SDOA 3V21A 1CFRA 4ZI0A 5EGAA
chains in the Genus database with same CATH topology
5JHTA 3WVPA 3BM3A 4E5LA 3MQ6A 4NFZA 1M0DA 4AVGA 2PFJA 4E5GA 5D9JA 2FOKA 5CGVA 4ZHZA 4R28A 3N78A 4F0QA 3EBJA 3WVKA 1ES8A 4F0PA 1DFMA 5DBSA 3WVGA 5DESA 1ESGA 1BAMA 3CAEA 2XI5A 2FQZA 4YYLA 2GB7A 2XI7A 4CGSA 4CHCA 3DW9A 2P14A 2E52A 1M0IA 4E5EA 4AVLA 4OC8A 1FOKA 3V20A 2P0JA 3MQYA 3A4KA 3HW6A 1BHMA 4AVQA 1DC1A 5JHVA 5CCYA 5FDGA 3HW3A 5DEBA 3WVIA 5D8UA 1D2IA 4ZQQA 2EWFA 4AWKA 3DPGA 2BAMA 5D4GA 5D2OA 3V1ZA 4E5JA 1KNVA 4E5FA 5D42A 5CZNA 4E5HA 4AWGA 5I13A 3ODHA 4AWMA 4CGXA 4AWFA 4AWHA 3HW4A 3WVHA 4E5IA 3HW5A 5CL0A 1VRRA 1FZRA 3BAMA 5FDDA 3N7BA 3DVOA 1SDOA 3V21A 1CFRA 4ZI0A 5EGAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DFM A;  1SDO A;  2BAM A;  3BAM A;  2P0J A;  1ESG A;  1D2I A;  1BAM A;  1VRR A;  1ES8 A;  3ODH A;  1BHM A; 
#chains in the Genus database with same CATH topology
 5JHT A;  3WVP A;  3BM3 A;  4E5L A;  3MQ6 A;  4NFZ A;  1M0D A;  4AVG A;  2PFJ A;  4E5G A;  5D9J A;  2FOK A;  5CGV A;  4ZHZ A;  4R28 A;  3N78 A;  4F0Q A;  3EBJ A;  3WVK A;  1ES8 A;  4F0P A;  1DFM A;  5DBS A;  3WVG A;  5DES A;  1ESG A;  1BAM A;  3CAE A;  2XI5 A;  2FQZ A;  4YYL A;  2GB7 A;  2XI7 A;  4CGS A;  4CHC A;  3DW9 A;  2P14 A;  2E52 A;  1M0I A;  4E5E A;  4AVL A;  4OC8 A;  1FOK A;  3V20 A;  2P0J A;  3MQY A;  3A4K A;  3HW6 A;  1BHM A;  4AVQ A;  1DC1 A;  5JHV A;  5CCY A;  5FDG A;  3HW3 A;  5DEB A;  3WVI A;  5D8U A;  1D2I A;  4ZQQ A;  2EWF A;  4AWK A;  3DPG A;  2BAM A;  5D4G A;  5D2O A;  3V1Z A;  4E5J A;  1KNV A;  4E5F A;  5D42 A;  5CZN A;  4E5H A;  4AWG A;  5I13 A;  3ODH A;  4AWM A;  4CGX A;  4AWF A;  4AWH A;  3HW4 A;  3WVH A;  4E5I A;  3HW5 A;  5CL0 A;  1VRR A;  1FZR A;  3BAM A;  5FDD A;  3N7B A;  3DVO A;  1SDO A;  3V21 A;  1CFR A;  4ZI0 A;  5EGA A; 
#chains in the Genus database with same CATH homology
 5JHT A;  3WVP A;  3BM3 A;  4E5L A;  3MQ6 A;  4NFZ A;  1M0D A;  4AVG A;  2PFJ A;  4E5G A;  5D9J A;  2FOK A;  5CGV A;  4ZHZ A;  4R28 A;  3N78 A;  4F0Q A;  3EBJ A;  3WVK A;  1ES8 A;  4F0P A;  1DFM A;  5DBS A;  3WVG A;  5DES A;  1ESG A;  1BAM A;  3CAE A;  2XI5 A;  2FQZ A;  4YYL A;  2GB7 A;  2XI7 A;  4CGS A;  4CHC A;  3DW9 A;  2P14 A;  2E52 A;  1M0I A;  4E5E A;  4AVL A;  4OC8 A;  1FOK A;  3V20 A;  2P0J A;  3MQY A;  3A4K A;  3HW6 A;  1BHM A;  4AVQ A;  1DC1 A;  5JHV A;  5CCY A;  5FDG A;  3HW3 A;  5DEB A;  3WVI A;  5D8U A;  1D2I A;  4ZQQ A;  2EWF A;  4AWK A;  3DPG A;  2BAM A;  5D4G A;  5D2O A;  3V1Z A;  4E5J A;  1KNV A;  4E5F A;  5D42 A;  5CZN A;  4E5H A;  4AWG A;  5I13 A;  3ODH A;  4AWM A;  4CGX A;  4AWF A;  4AWH A;  3HW4 A;  3WVH A;  4E5I A;  3HW5 A;  5CL0 A;  1VRR A;  1FZR A;  3BAM A;  5FDD A;  3N7B A;  3DVO A;  1SDO A;  3V21 A;  1CFR A;  4ZI0 A;  5EGA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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