2EWFA

Crystal structure of the site-specific dna nickase n.bspd6i
Total Genus 238
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
238
sequence length
604
structure length
587
Chain Sequence
MAKKVNWYVSCSPRSPEKIQPELKVLANFEGSYWKGVKGYKAQEAFAKELAALPQFLGAFSTRDRVAPMKTYGFVFVDEEGYLRITEAGKMLANNRRPKDVFLKQLVKWQYPSFQHKGKEYPEEEWSINPLVFVLSLLKKVGGLSKLDIAMFCLTATNNNQVDEIAEEIMQFRNEREKIKGQNKKLEFTENYFFKRFEKIYGNVSHKSKIETKMRNARDVADATTRYFRYTGLFVARGNQLVLNPEKSDLIDEIISSSKVVKNYTRVEEFHEYYGNPSLPQFSFETKEQLLDLAHRIRDENTRLAEQLVEHFPNVKVEIQVLEDIYNSLNKKVDVETLKDVIYHAKELQLELKKKKLQADFNDPRQLEEVIDLLEVYHEKKNVIEEKIKARFIANKNTVFEWLTWNGFIILGNALEYKNNFVIDEELQPVTHAAGNQPDMEIIYEDFIVLGEVTTSKGATQFKMESEPVTRHYLNKKKELEKQGVEKELYCLFIAPEINKNTFEEFMKYNIVQNTRIIPLSLKQFNMLLMVQKKLIEKGRRLSSYDIKNLMVSLYRTTIECERKYTQIKAGLEETLNNWVVDKEVRF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Nicking endonuclease N.BspD6I
publication title Structural analysis of the heterodimeric type IIS restriction endonuclease R.BspD6I acting as a complex between a monomeric site-specific nickase and a catalytic subunit.
pubmed doi rcsb
source organism Bacillus sp.
total genus 238
structure length 587
sequence length 604
ec nomenclature
pdb deposition date 2005-11-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09491 RE_AlwI AlwI restriction endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.310 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 2ewfA02
3.40.91.50 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 2ewfA03
2EWFA 2P14A
chains in the Genus database with same CATH superfamily
2F18A 4EZPA 4EZOA 2JNKA 2ND0A 3ABHA 3DDFA 5JHTA 2PY6A 3VKHA 1DFMA 4UDYX 4AVMA 4JNEA 4M0MA 1ESGA 4DCNC 2Q12A 5CCYA 3O3OB 1HXKA 1ZWWA 2ELBA 1SU8A 2EX3B 2F7QA 2OBLA 3I2WA 1M0DA 3QNIA 1TQTA 1SUFA 5EGAA 2FICA 3DDGA 3MQ6A 3HAIA 4H6IA 2Z0VA 4EZUA 3QE6A 4NPHA 3HW6A 3CAEA 4FM3A 3WVHA 2OZNB 3UITA 1X03A 2N3KA 3BVVA 3QNJA 2QKWA 2QFFA 3BVTA 4PO2A 2X5CA 3M3WA 4KIKA 2QXLA 3ER9B 5D9JA 1R34A 3I39X 2JNSA 4AZIA 2WINM 3B52X 3T47A 1DKYA 3O3MB 4EZQA 1OA1A 3EJTA 4R5IA 4IW0A 4F00A 2ALWA 2LM0A 1DKZA 3C7NA 1BAMA 3D2FA 3T48A 4D8JA 4R5KA 5TKYA 4AWFA 3DVOA 4FZSA 4H6HA 1TQUA 3BUQA 2EWFA 2FOKA 1I4DA 1FOKA 3BUPA 2YL9A 4CGSA 3CZSA 3EJSA 4F0QA 4EZWA 4E3CA 3KAWA 3BUBA 4EZTA 3LMFA 3EJPA 3DPQA 3B53X 2F1AA 4R28A 4B9QA 4NFZA 2YL8A 1YWMA 2XI5A 3O3NB 2X3VA 2Z0NA 2Z8YA 1BHMA 5DBSA 1GNTA 2MI7A 4AWKA 3DPOA 4AWMA 5D2OA 3RV1A 2YIBA 4EZXA 1O7DC 1KNVA 4R5LA 2C08A 1CFRA 2GA9D 4AZ7A 2YLAA 2YI9A 1ZYLA 4EZRA 1URUA 1VRRA 2O0I1 1OAOA 3WVIA 5FIGA 4AZ5A 2BAMA 3QA8A 3I04A 1DKXA 3QWEA 4AZBA 1GN9A 3ODHA 3VEAA 2OW6A 3D4ZA 3Q84A 4IWOA 5D4GA 4JWCA 2D4CA 4FZPA 2YIVX 4NQIA 1E9VA 3OWGA 3HAJA 3CVRA 3ZEDA 3HW3A 1TQVA 1OA0A 2Q13A 3BLBA 3CKDA 3T46A 4E5LA 2X3XA 2P0JA 1QX1A 3ACOA 4JWEA 3RPMA 3CAZA 1LQ7A 1E2UA 2RAKA 2RAJA 3HW5A 5I13A 4E5JA 4EZNA 3V1ZA 2ND1A 4JWIA 2P14A 2ZXQA 4AVGA 2OO2A 4ATMA 2EFKA 4I1QA 4E5HA 4AKVA 2FYVA 4JWDA 2XI7A 3CZNA 1I4TA 1ES8A 3RV0A 1UPXA 5C5BA 3EJUA 4IM3A 2YL5A 3WVGA 3DX2A 3DX4A 3HW4A 1O7DB 5CGVA 4H8SA 4E5EA 5KBPA 3V20A 1HWWA 2F7PA 5FLEX 4HR1A 4WPCA 2F1BA 1FZRA 3PLTA 5DESA 4ZQQA 3BAMA 3D51A 3BVXA 3B51X 5CZNA 4JLCA 4E5IA 4EZVA 4IM2A 5CL0A 3WVPA 3VEBA 4OC8A 4YYLA 2WYHA 3DW9A 5D42A 4FZOA 4NSWA 4DYLA 1E1DA 4AZ6A 2GB7A 3L3PA 5FDDA 3KAVA 2F7OA 3N78A 5C5BB 3OK8A 1R33A 4IWQA 4ZI0A 3DYTA 2RAIA 2GAFD 3BVUA 3GI7A 3D2EA 2PFJA 3OHXM 2YKTA 3ERCC 3LVTA 3Q0KA 1JQKA 4E81A 4UDXX 3EBJA 4HR1B 3T4AG 4JN4A 1X04A 2WYIA 4R5JA 1I4LA 2OBMA 3DX1A 4IM0A 3MQYA 1SU6A 5FDGA 5DEBA 2FQZA 4AWHA 1QWNA 5JHVA 1U00A 1WDZA 4G6QA 1GNLA 2PMRA 1PS3A 4F0PA 2YIAA 3FD9A 3BUIA 3F7WA 4HYBA 3LLLA 3DPGA 4AVLA 2Z0OA 3WVKA 3A4KA 4E5GA 3D52A 4JL9A 3DX3A 4HY9A 2GF4A 1TQSA 3KDRA 1TQWA 3T49A 3DX0A 1HTYA 2E52A 3EJQA 3DPPA 3D4YA 2X3WA 4E5FA 1W9MA 3G9GA 1SU7A 4R5GA 5E84A 4EZYA 4CGXA 2NCZA 4AZCA 4EZZA 4BNEA 2OW7A 1D2IA 3D50A 4IWPA 3SOGA 3N7BA 3CV5A 2EFLA 3BVWA 1I49A 1QWUA 5D8UA 2YLLA 2V0OA 1M0IA 4AVQA 1R5EA 3BM3A 4JNFA 4WPEA 3V21A 2F7RA 1Y2OA 3ER8C 4AWGA 3HAHA 2LXYA 4EZSA 2D1LA 4AZGA 3L3OM 1DC1A 3EJRA 2YL6A 2RT6A 4AZHA 1MJGA 4KIKB 2KHOA 4F01A 1SDOA 2YI8A 3SYVA 3BUDA 4AZCB 3I01A 4CHCA 3A98A 4ZHZA
chains in the Genus database with same CATH topology
5JHVA 1U00A 4G6QA 4EZPA 1GNLA 4EZTA 3LMFA 4F0PA 2YIAA 4E5HA 3FD9A 3DPQA 3B53X 3F7WA 4EZOA 4HYBA 4JWDA 4R28A 4B9QA 2ND0A 5JHTA 2XI7A 4NFZA 2PY6A 1ES8A 3RV0A 3VKHA 1UPXA 1DFMA 4IM3A 4AVLA 3DPGA 3WVGA 2XI5A 4UDYX 3O3NB 3WVKA 3A4KA 4E5GA 4JNEA 4JL9A 2Z8YA 1BHMA 4M0MA 5DBSA 1ESGA 4HY9A 1GNTA 3KDRA 4AWKA 5CCYA 3O3OB 3T49A 3HW4A 1SU8A 3DPOA 5CGVA 4AWMA 2EX3B 2E52A 2OBLA 4E5EA 5D2OA 1M0DA 3V20A 3DPPA 5FLEX 3RV1A 1SUFA 4HR1A 2YIBA 4EZXA 1FZRA 5EGAA 4E5FA 1W9MA 1SU7A 4R5GA 5E84A 3MQ6A 1KNVA 5DESA 4R5LA 4H6IA 4EZYA 1CFRA 4ZQQA 4CGXA 3BAMA 2GA9D 2NCZA 4EZUA 4EZZA 3B51X 5CZNA 2YI9A 4NPHA 3HW6A 1ZYLA 3CAEA 1D2IA 4EZRA 4FM3A 3WVHA 1VRRA 4JLCA 4IWPA 3UITA 4EZVA 4E5IA 3N7BA 4IM2A 5CL0A 2N3KA 3WVPA 1OAOA 3VEBA 4OC8A 3QNJA 3WVIA 5FIGA 2QFFA 4PO2A 4YYLA 2X5CA 2BAMA 4KIKA 2QXLA 3QA8A 3ER9B 5D9JA 3I39X 1DKXA 3I04A 5D8UA 1GN9A 3ODHA 3VEAA 3DW9A 2JNSA 5D42A 1M0IA 4IWOA 2WINM 5D4GA 1E1DA 3B52X 4AVQA 4JWCA 3T47A 5FDDA 2GB7A 3BM3A 4JNFA 3KAVA 3N78A 2YIVX 3V21A 1DKYA 1E9VA 3OWGA 3ZEDA 3O3MB 3ER8C 3HW3A 4AWGA 4EZQA 1OA1A 4EZSA 3L3OM 4IWQA 4R5IA 4ZI0A 1OA0A 4IW0A 1DC1A 4F00A 2GAFD 3GI7A 3D2EA 2PFJA 3OHXM 2LM0A 1DKZA 2RT6A 3C7NA 1BAMA 1MJGA 3D2FA 4KIKB 3T48A 2KHOA 4F01A 3ERCC 4D8JA 1JQKA 4R5KA 5TKYA 3T46A 4E5LA 1SDOA 4AWFA 2YI8A 3DVOA 2P0JA 4E81A 4UDXX 3EBJA 4HR1B 4JWEA 3T4AG 4H6HA 4JN4A 2EWFA 2FOKA 4R5JA 1E2UA 2OBMA 4IM0A 3I01A 3MQYA 3HW5A 1SU6A 4CHCA 1FOKA 5FDGA 5I13A 4CGSA 4E5JA 4F0QA 3A98A 5DEBA 4EZNA 4EZWA 2FQZA 4E3CA 3V1ZA 4AWHA 2ND1A 4JWIA 4ZHZA 3KAWA 2P14A 4AVGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EWF A;  2P14 A; 
#chains in the Genus database with same CATH topology
 2F18 A;  4EZP A;  4EZO A;  2JNK A;  2ND0 A;  3ABH A;  3DDF A;  5JHT A;  2PY6 A;  3VKH A;  1DFM A;  4UDY X;  4AVM A;  4JNE A;  4M0M A;  1ESG A;  4DCN C;  2Q12 A;  5CCY A;  3O3O B;  1HXK A;  1ZWW A;  2ELB A;  1SU8 A;  2EX3 B;  2F7Q A;  2OBL A;  3I2W A;  1M0D A;  3QNI A;  1TQT A;  1SUF A;  5EGA A;  2FIC A;  3DDG A;  3MQ6 A;  3HAI A;  4H6I A;  2Z0V A;  4EZU A;  3QE6 A;  4NPH A;  3HW6 A;  3CAE A;  4FM3 A;  3WVH A;  2OZN B;  3UIT A;  1X03 A;  2N3K A;  3BVV A;  3QNJ A;  2QKW A;  2QFF A;  3BVT A;  4PO2 A;  2X5C A;  3M3W A;  4KIK A;  2QXL A;  3ER9 B;  5D9J A;  1R34 A;  3I39 X;  2JNS A;  4AZI A;  2WIN M;  3B52 X;  3T47 A;  1DKY A;  3O3M B;  4EZQ A;  1OA1 A;  3EJT A;  4R5I A;  4IW0 A;  4F00 A;  2ALW A;  2LM0 A;  1DKZ A;  3C7N A;  1BAM A;  3D2F A;  3T48 A;  4D8J A;  4R5K A;  5TKY A;  4AWF A;  3DVO A;  4FZS A;  4H6H A;  1TQU A;  3BUQ A;  2EWF A;  2FOK A;  1I4D A;  1FOK A;  3BUP A;  2YL9 A;  4CGS A;  3CZS A;  3EJS A;  4F0Q A;  4EZW A;  4E3C A;  3KAW A;  3BUB A;  4EZT A;  3LMF A;  3EJP A;  3DPQ A;  3B53 X;  2F1A A;  4R28 A;  4B9Q A;  4NFZ A;  2YL8 A;  1YWM A;  2XI5 A;  3O3N B;  2X3V A;  2Z0N A;  2Z8Y A;  1BHM A;  5DBS A;  1GNT A;  2MI7 A;  4AWK A;  3DPO A;  4AWM A;  5D2O A;  3RV1 A;  2YIB A;  4EZX A;  1O7D C;  1KNV A;  4R5L A;  2C08 A;  1CFR A;  2GA9 D;  4AZ7 A;  2YLA A;  2YI9 A;  1ZYL A;  4EZR A;  1URU A;  1VRR A;  2O0I 1;  1OAO A;  3WVI A;  5FIG A;  4AZ5 A;  2BAM A;  3QA8 A;  3I04 A;  1DKX A;  3QWE A;  4AZB A;  1GN9 A;  3ODH A;  3VEA A;  2OW6 A;  3D4Z A;  3Q84 A;  4IWO A;  5D4G A;  4JWC A;  2D4C A;  4FZP A;  2YIV X;  4NQI A;  1E9V A;  3OWG A;  3HAJ A;  3CVR A;  3ZED A;  3HW3 A;  1TQV A;  1OA0 A;  2Q13 A;  3BLB A;  3CKD A;  3T46 A;  4E5L A;  2X3X A;  2P0J A;  1QX1 A;  3ACO A;  4JWE A;  3RPM A;  3CAZ A;  1LQ7 A;  1E2U A;  2RAK A;  2RAJ A;  3HW5 A;  5I13 A;  4E5J A;  4EZN A;  3V1Z A;  2ND1 A;  4JWI A;  2P14 A;  2ZXQ A;  4AVG A;  2OO2 A;  4ATM A;  2EFK A;  4I1Q A;  4E5H A;  4AKV A;  2FYV A;  4JWD A;  2XI7 A;  3CZN A;  1I4T A;  1ES8 A;  3RV0 A;  1UPX A;  5C5B A;  3EJU A;  4IM3 A;  2YL5 A;  3WVG A;  3DX2 A;  3DX4 A;  3HW4 A;  1O7D B;  5CGV A;  4H8S A;  4E5E A;  5KBP A;  3V20 A;  1HWW A;  2F7P A;  5FLE X;  4HR1 A;  4WPC A;  2F1B A;  1FZR A;  3PLT A;  5DES A;  4ZQQ A;  3BAM A;  3D51 A;  3BVX A;  3B51 X;  5CZN A;  4JLC A;  4E5I A;  4EZV A;  4IM2 A;  5CL0 A;  3WVP A;  3VEB A;  4OC8 A;  4YYL A;  2WYH A;  3DW9 A;  5D42 A;  4FZO A;  4NSW A;  4DYL A;  1E1D A;  4AZ6 A;  2GB7 A;  3L3P A;  5FDD A;  3KAV A;  2F7O A;  3N78 A;  5C5B B;  3OK8 A;  1R33 A;  4IWQ A;  4ZI0 A;  3DYT A;  2RAI A;  2GAF D;  3BVU A;  3GI7 A;  3D2E A;  2PFJ A;  3OHX M;  2YKT A;  3ERC C;  3LVT A;  3Q0K A;  1JQK A;  4E81 A;  4UDX X;  3EBJ A;  4HR1 B;  3T4A G;  4JN4 A;  1X04 A;  2WYI A;  4R5J A;  1I4L A;  2OBM A;  3DX1 A;  4IM0 A;  3MQY A;  1SU6 A;  5FDG A;  5DEB A;  2FQZ A;  4AWH A;  1QWN A;  5JHV A;  1U00 A;  1WDZ A;  4G6Q A;  1GNL A;  2PMR A;  1PS3 A;  4F0P A;  2YIA A;  3FD9 A;  3BUI A;  3F7W A;  4HYB A;  3LLL A;  3DPG A;  4AVL A;  2Z0O A;  3WVK A;  3A4K A;  4E5G A;  3D52 A;  4JL9 A;  3DX3 A;  4HY9 A;  2GF4 A;  1TQS A;  3KDR A;  1TQW A;  3T49 A;  3DX0 A;  1HTY A;  2E52 A;  3EJQ A;  3DPP A;  3D4Y A;  2X3W A;  4E5F A;  1W9M A;  3G9G A;  1SU7 A;  4R5G A;  5E84 A;  4EZY A;  4CGX A;  2NCZ A;  4AZC A;  4EZZ A;  4BNE A;  2OW7 A;  1D2I A;  3D50 A;  4IWP A;  3SOG A;  3N7B A;  3CV5 A;  2EFL A;  3BVW A;  1I49 A;  1QWU A;  5D8U A;  2YLL A;  2V0O A;  1M0I A;  4AVQ A;  1R5E A;  3BM3 A;  4JNF A;  4WPE A;  3V21 A;  2F7R A;  1Y2O A;  3ER8 C;  4AWG A;  3HAH A;  2LXY A;  4EZS A;  2D1L A;  4AZG A;  3L3O M;  1DC1 A;  3EJR A;  2YL6 A;  2RT6 A;  4AZH A;  1MJG A;  4KIK B;  2KHO A;  4F01 A;  1SDO A;  2YI8 A;  3SYV A;  3BUD A;  4AZC B;  3I01 A;  4CHC A;  3A98 A;  4ZHZ A; 
#chains in the Genus database with same CATH homology
 5JHV A;  1U00 A;  4G6Q A;  4EZP A;  1GNL A;  4EZT A;  3LMF A;  4F0P A;  2YIA A;  4E5H A;  3FD9 A;  3DPQ A;  3B53 X;  3F7W A;  4EZO A;  4HYB A;  4JWD A;  4R28 A;  4B9Q A;  2ND0 A;  5JHT A;  2XI7 A;  4NFZ A;  2PY6 A;  1ES8 A;  3RV0 A;  3VKH A;  1UPX A;  1DFM A;  4IM3 A;  4AVL A;  3DPG A;  3WVG A;  2XI5 A;  4UDY X;  3O3N B;  3WVK A;  3A4K A;  4E5G A;  4JNE A;  4JL9 A;  2Z8Y A;  1BHM A;  4M0M A;  5DBS A;  1ESG A;  4HY9 A;  1GNT A;  3KDR A;  4AWK A;  5CCY A;  3O3O B;  3T49 A;  3HW4 A;  1SU8 A;  3DPO A;  5CGV A;  4AWM A;  2EX3 B;  2E52 A;  2OBL A;  4E5E A;  5D2O A;  1M0D A;  3V20 A;  3DPP A;  5FLE X;  3RV1 A;  1SUF A;  4HR1 A;  2YIB A;  4EZX A;  1FZR A;  5EGA A;  4E5F A;  1W9M A;  1SU7 A;  4R5G A;  5E84 A;  3MQ6 A;  1KNV A;  5DES A;  4R5L A;  4H6I A;  4EZY A;  1CFR A;  4ZQQ A;  4CGX A;  3BAM A;  2GA9 D;  2NCZ A;  4EZU A;  4EZZ A;  3B51 X;  5CZN A;  2YI9 A;  4NPH A;  3HW6 A;  1ZYL A;  3CAE A;  1D2I A;  4EZR A;  4FM3 A;  3WVH A;  1VRR A;  4JLC A;  4IWP A;  3UIT A;  4EZV A;  4E5I A;  3N7B A;  4IM2 A;  5CL0 A;  2N3K A;  3WVP A;  1OAO A;  3VEB A;  4OC8 A;  3QNJ A;  3WVI A;  5FIG A;  2QFF A;  4PO2 A;  4YYL A;  2X5C A;  2BAM A;  4KIK A;  2QXL A;  3QA8 A;  3ER9 B;  5D9J A;  3I39 X;  1DKX A;  3I04 A;  5D8U A;  1GN9 A;  3ODH A;  3VEA A;  3DW9 A;  2JNS A;  5D42 A;  1M0I A;  4IWO A;  2WIN M;  5D4G A;  1E1D A;  3B52 X;  4AVQ A;  4JWC A;  3T47 A;  5FDD A;  2GB7 A;  3BM3 A;  4JNF A;  3KAV A;  3N78 A;  2YIV X;  3V21 A;  1DKY A;  1E9V A;  3OWG A;  3ZED A;  3O3M B;  3ER8 C;  3HW3 A;  4AWG A;  4EZQ A;  1OA1 A;  4EZS A;  3L3O M;  4IWQ A;  4R5I A;  4ZI0 A;  1OA0 A;  4IW0 A;  1DC1 A;  4F00 A;  2GAF D;  3GI7 A;  3D2E A;  2PFJ A;  3OHX M;  2LM0 A;  1DKZ A;  2RT6 A;  3C7N A;  1BAM A;  1MJG A;  3D2F A;  4KIK B;  3T48 A;  2KHO A;  4F01 A;  3ERC C;  4D8J A;  1JQK A;  4R5K A;  5TKY A;  3T46 A;  4E5L A;  1SDO A;  4AWF A;  2YI8 A;  3DVO A;  2P0J A;  4E81 A;  4UDX X;  3EBJ A;  4HR1 B;  4JWE A;  3T4A G;  4H6H A;  4JN4 A;  2EWF A;  2FOK A;  4R5J A;  1E2U A;  2OBM A;  4IM0 A;  3I01 A;  3MQY A;  3HW5 A;  1SU6 A;  4CHC A;  1FOK A;  5FDG A;  5I13 A;  4CGS A;  4E5J A;  4F0Q A;  3A98 A;  5DEB A;  4EZN A;  4EZW A;  2FQZ A;  4E3C A;  3V1Z A;  4AWH A;  2ND1 A;  4JWI A;  4ZHZ A;  3KAW A;  2P14 A;  4AVG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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