1F3VB

Crystal structure of the complex between the n-terminal domain of tradd and the traf domain of traf2
Total Genus 35
2040608010012014016005101520253035
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
171
structure length
171
Chain Sequence
KDLAMADLEQKVLEMEASTYDGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Apoptosis
source organism Homo sapiens
publication title A novel mechanism of TRAF signaling revealed by structural and functional analyses of the TRADD-TRAF2 interaction.
pubmed doi rcsb
molecule keywords TUMOR NECROSIS FACTOR RECEPTOR TYPE 1 ASSOCIATED DEATH DOMAI
total genus 35
structure length 171
sequence length 171
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2000-06-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1f3vB00
1F3VB 1ZMSA 2F1WA 2GKWA 2F1XA 3HQIA 1CA9A 1LB4A 1CZZA 4O1VA 2CR2A 1YZEA 2FOJA 1FLLA 1LB6A 1D00A 2AN6A 4GWNA 4M4EA 1QSCA 3ZJBA 1K2FA 1D0JA 3IVVA 1RF3A 2FOOA 3MQRA 3HQMA 5E1TA 4I7BA 4Z8MA 2F1YA 2A25A 3MQSC 1KZZA 4JJQA 3HSVA 4GWMA 4CA1A 4I7CA 2FOPA 3HQHA 1CA4A 4K8UA 4GHUA 3HU6A 2F1ZA 4KG9A 4YSIA 3HQLA 1L0AA 1CZYA 4C9ZA 3IVQA 4I7DA 4X3GA 3IVBA 1D0AA 1D01A 1LB5A 2XXNA 4GJHA 5H9MA 1YY6A 1FLKA
chains in the Genus database with same CATH superfamily
1F3VB 1ZMSA 2F1WA 2GKWA 2F1XA 3HQIA 1CA9A 1LB4A 1CZZA 4O1VA 2CR2A 1YZEA 2FOJA 1FLLA 1LB6A 1D00A 2AN6A 4GWNA 4M4EA 1QSCA 3ZJBA 1K2FA 1D0JA 3IVVA 1RF3A 2FOOA 3MQRA 3HQMA 5E1TA 4I7BA 4Z8MA 2F1YA 2A25A 3MQSC 1KZZA 4JJQA 3HSVA 4GWMA 4CA1A 4I7CA 2FOPA 3HQHA 1CA4A 4K8UA 4GHUA 3HU6A 2F1ZA 4KG9A 4YSIA 3HQLA 1L0AA 1CZYA 4C9ZA 3IVQA 4I7DA 4X3GA 3IVBA 1D0AA 1D01A 1LB5A 2XXNA 4GJHA 5H9MA 1YY6A 1FLKA
chains in the Genus database with same CATH topology
1F3VB 1ZMSA 2F1WA 2GKWA 2F1XA 3HQIA 1CA9A 1LB4A 1CZZA 4O1VA 2CR2A 1YZEA 2FOJA 1FLLA 1LB6A 1D00A 2AN6A 4GWNA 4M4EA 1QSCA 3ZJBA 1K2FA 1D0JA 3IVVA 1RF3A 2FOOA 3MQRA 3HQMA 5E1TA 4I7BA 4Z8MA 2F1YA 2A25A 3MQSC 1KZZA 4JJQA 3HSVA 4GWMA 4CA1A 4I7CA 2FOPA 3HQHA 1CA4A 4K8UA 4GHUA 3HU6A 2F1ZA 4KG9A 4YSIA 3HQLA 1L0AA 1CZYA 4C9ZA 3IVQA 4I7DA 4X3GA 3IVBA 1D0AA 1D01A 1LB5A 2XXNA 4GJHA 5H9MA 1YY6A 1FLKA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1F3V B;  1ZMS A;  2F1W A;  2GKW A;  2F1X A;  3HQI A;  1CA9 A;  1LB4 A;  1CZZ A;  4O1V A;  2CR2 A;  1YZE A;  2FOJ A;  1FLL A;  1LB6 A;  1D00 A;  2AN6 A;  4GWN A;  4M4E A;  1QSC A;  3ZJB A;  1K2F A;  1D0J A;  3IVV A;  1RF3 A;  2FOO A;  3MQR A;  3HQM A;  5E1T A;  4I7B A;  4Z8M A;  2F1Y A;  2A25 A;  3MQS C;  1KZZ A;  4JJQ A;  3HSV A;  4GWM A;  4CA1 A;  4I7C A;  2FOP A;  3HQH A;  1CA4 A;  4K8U A;  4GHU A;  3HU6 A;  2F1Z A;  4KG9 A;  4YSI A;  3HQL A;  1L0A A;  1CZY A;  4C9Z A;  3IVQ A;  4I7D A;  4X3G A;  3IVB A;  1D0A A;  1D01 A;  1LB5 A;  2XXN A;  4GJH A;  5H9M A;  1YY6 A;  1FLK A; 
#chains in the Genus database with same CATH topology
 1F3V B;  1ZMS A;  2F1W A;  2GKW A;  2F1X A;  3HQI A;  1CA9 A;  1LB4 A;  1CZZ A;  4O1V A;  2CR2 A;  1YZE A;  2FOJ A;  1FLL A;  1LB6 A;  1D00 A;  2AN6 A;  4GWN A;  4M4E A;  1QSC A;  3ZJB A;  1K2F A;  1D0J A;  3IVV A;  1RF3 A;  2FOO A;  3MQR A;  3HQM A;  5E1T A;  4I7B A;  4Z8M A;  2F1Y A;  2A25 A;  3MQS C;  1KZZ A;  4JJQ A;  3HSV A;  4GWM A;  4CA1 A;  4I7C A;  2FOP A;  3HQH A;  1CA4 A;  4K8U A;  4GHU A;  3HU6 A;  2F1Z A;  4KG9 A;  4YSI A;  3HQL A;  1L0A A;  1CZY A;  4C9Z A;  3IVQ A;  4I7D A;  4X3G A;  3IVB A;  1D0A A;  1D01 A;  1LB5 A;  2XXN A;  4GJH A;  5H9M A;  1YY6 A;  1FLK A; 
#chains in the Genus database with same CATH homology
 1F3V B;  1ZMS A;  2F1W A;  2GKW A;  2F1X A;  3HQI A;  1CA9 A;  1LB4 A;  1CZZ A;  4O1V A;  2CR2 A;  1YZE A;  2FOJ A;  1FLL A;  1LB6 A;  1D00 A;  2AN6 A;  4GWN A;  4M4E A;  1QSC A;  3ZJB A;  1K2F A;  1D0J A;  3IVV A;  1RF3 A;  2FOO A;  3MQR A;  3HQM A;  5E1T A;  4I7B A;  4Z8M A;  2F1Y A;  2A25 A;  3MQS C;  1KZZ A;  4JJQ A;  3HSV A;  4GWM A;  4CA1 A;  4I7C A;  2FOP A;  3HQH A;  1CA4 A;  4K8U A;  4GHU A;  3HU6 A;  2F1Z A;  4KG9 A;  4YSI A;  3HQL A;  1L0A A;  1CZY A;  4C9Z A;  3IVQ A;  4I7D A;  4X3G A;  3IVB A;  1D0A A;  1D01 A;  1LB5 A;  2XXN A;  4GJH A;  5H9M A;  1YY6 A;  1FLK A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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