3IVVA

Structures of spop-substrate complexes: insights into molecular architectures of btb-cul3 ubiquitin ligases: spopmath-pucsbc1_pep1
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
140
structure length
140
Chain Sequence
SGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases.
pubmed doi rcsb
molecule keywords Speckle-type POZ protein
molecule tags Ligase
source organism Homo sapiens
total genus 32
structure length 140
sequence length 140
ec nomenclature
pdb deposition date 2009-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00917 MATH MATH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 3ivvA01
4I7DA 4CA1A 3MQSC 1LB5A 1CA4A 2F1WA 2FOJA 3IVVA 3IVBA 5E1TA 2GKWA 1CZYA 1F3VB 3HQHA 5H9MA 1YY6A 1FLKA 1FLLA 1KZZA 1D0JA 4GHUA 4GWMA 4X3GA 4I7BA 1L0AA 3HQIA 1QSCA 2A25A 1LB4A 1RF3A 1K2FA 2AN6A 1D01A 2F1YA 4C9ZA 2FOOA 3HSVA 4M4EA 1CZZA 4KG9A 4I7CA 4Z8MA 2FOPA 4O1VA 4YSIA 3HU6A 1D0AA 1CA9A 3IVQA 3HQLA 3ZJBA 1YZEA 1ZMSA 2F1ZA 2F1XA 4JJQA 4GWNA 3MQRA 4GJHA 2CR2A 2XXNA 3HQMA 4K8UA 1LB6A 1D00A
chains in the Genus database with same CATH superfamily
4I7DA 4CA1A 3MQSC 1LB5A 1CA4A 2F1WA 2FOJA 3IVVA 3IVBA 5E1TA 2GKWA 1CZYA 1F3VB 3HQHA 5H9MA 1YY6A 1FLKA 1FLLA 1KZZA 1D0JA 4GHUA 4GWMA 4X3GA 4I7BA 1L0AA 3HQIA 1QSCA 2A25A 1LB4A 1RF3A 1K2FA 2AN6A 1D01A 2F1YA 4C9ZA 2FOOA 3HSVA 4M4EA 1CZZA 4KG9A 4I7CA 4Z8MA 2FOPA 4O1VA 4YSIA 3HU6A 1D0AA 1CA9A 3IVQA 3HQLA 3ZJBA 1YZEA 1ZMSA 2F1ZA 2F1XA 4JJQA 4GWNA 3MQRA 4GJHA 2CR2A 2XXNA 3HQMA 4K8UA 1LB6A 1D00A
chains in the Genus database with same CATH topology
4I7DA 4CA1A 3MQSC 1LB5A 1CA4A 2F1WA 2FOJA 3IVVA 3IVBA 5E1TA 2GKWA 1CZYA 1F3VB 3HQHA 5H9MA 1YY6A 1FLKA 1FLLA 1KZZA 1D0JA 4GHUA 4GWMA 4X3GA 4I7BA 1L0AA 3HQIA 1QSCA 2A25A 1LB4A 1RF3A 1K2FA 2AN6A 1D01A 2F1YA 4C9ZA 2FOOA 3HSVA 4M4EA 1CZZA 4KG9A 4I7CA 4Z8MA 2FOPA 4O1VA 4YSIA 3HU6A 1D0AA 1CA9A 3IVQA 3HQLA 3ZJBA 1YZEA 1ZMSA 2F1ZA 2F1XA 4JJQA 4GWNA 3MQRA 4GJHA 2CR2A 2XXNA 3HQMA 4K8UA 1LB6A 1D00A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4I7D A;  4CA1 A;  3MQS C;  1LB5 A;  1CA4 A;  2F1W A;  2FOJ A;  3IVV A;  3IVB A;  5E1T A;  2GKW A;  1CZY A;  1F3V B;  3HQH A;  5H9M A;  1YY6 A;  1FLK A;  1FLL A;  1KZZ A;  1D0J A;  4GHU A;  4GWM A;  4X3G A;  4I7B A;  1L0A A;  3HQI A;  1QSC A;  2A25 A;  1LB4 A;  1RF3 A;  1K2F A;  2AN6 A;  1D01 A;  2F1Y A;  4C9Z A;  2FOO A;  3HSV A;  4M4E A;  1CZZ A;  4KG9 A;  4I7C A;  4Z8M A;  2FOP A;  4O1V A;  4YSI A;  3HU6 A;  1D0A A;  1CA9 A;  3IVQ A;  3HQL A;  3ZJB A;  1YZE A;  1ZMS A;  2F1Z A;  2F1X A;  4JJQ A;  4GWN A;  3MQR A;  4GJH A;  2CR2 A;  2XXN A;  3HQM A;  4K8U A;  1LB6 A;  1D00 A; 
#chains in the Genus database with same CATH topology
 4I7D A;  4CA1 A;  3MQS C;  1LB5 A;  1CA4 A;  2F1W A;  2FOJ A;  3IVV A;  3IVB A;  5E1T A;  2GKW A;  1CZY A;  1F3V B;  3HQH A;  5H9M A;  1YY6 A;  1FLK A;  1FLL A;  1KZZ A;  1D0J A;  4GHU A;  4GWM A;  4X3G A;  4I7B A;  1L0A A;  3HQI A;  1QSC A;  2A25 A;  1LB4 A;  1RF3 A;  1K2F A;  2AN6 A;  1D01 A;  2F1Y A;  4C9Z A;  2FOO A;  3HSV A;  4M4E A;  1CZZ A;  4KG9 A;  4I7C A;  4Z8M A;  2FOP A;  4O1V A;  4YSI A;  3HU6 A;  1D0A A;  1CA9 A;  3IVQ A;  3HQL A;  3ZJB A;  1YZE A;  1ZMS A;  2F1Z A;  2F1X A;  4JJQ A;  4GWN A;  3MQR A;  4GJH A;  2CR2 A;  2XXN A;  3HQM A;  4K8U A;  1LB6 A;  1D00 A; 
#chains in the Genus database with same CATH homology
 4I7D A;  4CA1 A;  3MQS C;  1LB5 A;  1CA4 A;  2F1W A;  2FOJ A;  3IVV A;  3IVB A;  5E1T A;  2GKW A;  1CZY A;  1F3V B;  3HQH A;  5H9M A;  1YY6 A;  1FLK A;  1FLL A;  1KZZ A;  1D0J A;  4GHU A;  4GWM A;  4X3G A;  4I7B A;  1L0A A;  3HQI A;  1QSC A;  2A25 A;  1LB4 A;  1RF3 A;  1K2F A;  2AN6 A;  1D01 A;  2F1Y A;  4C9Z A;  2FOO A;  3HSV A;  4M4E A;  1CZZ A;  4KG9 A;  4I7C A;  4Z8M A;  2FOP A;  4O1V A;  4YSI A;  3HU6 A;  1D0A A;  1CA9 A;  3IVQ A;  3HQL A;  3ZJB A;  1YZE A;  1ZMS A;  2F1Z A;  2F1X A;  4JJQ A;  4GWN A;  3MQR A;  4GJH A;  2CR2 A;  2XXN A;  3HQM A;  4K8U A;  1LB6 A;  1D00 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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