2F1WA

Crystal structure of the traf-like domain of hausp/usp7
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
144
structure length
144
Chain Sequence
TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Homo sapiens
publication title Structural Basis of Competitive Recognition of p53 and MDM2 by HAUSP/USP7: Implications for the Regulation of the p53-MDM2 Pathway.
pubmed doi rcsb
molecule keywords Ubiquitin carboxyl-terminal hydrolase 7
total genus 26
structure length 144
sequence length 144
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2005-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00917 MATH MATH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 2f1wA00
2F1ZA 1LB5A 4O1VA 1CZYA 3HU6A 4I7DA 2AN6A 4KG9A 4GHUA 2CR2A 3MQRA 2XXNA 1K2FA 1KZZA 1LB6A 1CA9A 1ZMSA 3HQLA 1D00A 4JJQA 1CA4A 5H9MA 4GJHA 1LB4A 4GWMA 2F1YA 3IVQA 4YSIA 3HSVA 2GKWA 3HQIA 4M4EA 1F3VB 1RF3A 3ZJBA 4K8UA 1QSCA 1FLLA 3IVBA 3MQSC 3HQHA 2A25A 4I7BA 4Z8MA 1D01A 1CZZA 1L0AA 2F1XA 4X3GA 2FOJA 1YZEA 2F1WA 4I7CA 3IVVA 4CA1A 4C9ZA 1D0AA 1YY6A 2FOOA 3HQMA 1FLKA 4GWNA 1D0JA 2FOPA 5E1TA
chains in the Genus database with same CATH superfamily
2F1ZA 1LB5A 4O1VA 1CZYA 3HU6A 4I7DA 2AN6A 4KG9A 4GHUA 2CR2A 3MQRA 2XXNA 1K2FA 1KZZA 1LB6A 1CA9A 1ZMSA 3HQLA 1D00A 4JJQA 1CA4A 5H9MA 4GJHA 1LB4A 4GWMA 2F1YA 3IVQA 4YSIA 3HSVA 2GKWA 3HQIA 4M4EA 1F3VB 1RF3A 3ZJBA 4K8UA 1QSCA 1FLLA 3IVBA 3MQSC 3HQHA 2A25A 4I7BA 4Z8MA 1D01A 1CZZA 1L0AA 2F1XA 4X3GA 2FOJA 1YZEA 2F1WA 4I7CA 3IVVA 4CA1A 4C9ZA 1D0AA 1YY6A 2FOOA 3HQMA 1FLKA 4GWNA 1D0JA 2FOPA 5E1TA
chains in the Genus database with same CATH topology
2F1ZA 1LB5A 4O1VA 1CZYA 3HU6A 4I7DA 2AN6A 4KG9A 4GHUA 2CR2A 3MQRA 2XXNA 1K2FA 1KZZA 1LB6A 1CA9A 1ZMSA 3HQLA 1D00A 4JJQA 1CA4A 5H9MA 4GJHA 1LB4A 4GWMA 2F1YA 3IVQA 4YSIA 3HSVA 2GKWA 3HQIA 4M4EA 1F3VB 1RF3A 3ZJBA 4K8UA 1QSCA 1FLLA 3IVBA 3MQSC 3HQHA 2A25A 4I7BA 4Z8MA 1D01A 1CZZA 1L0AA 2F1XA 4X3GA 2FOJA 1YZEA 2F1WA 4I7CA 3IVVA 4CA1A 4C9ZA 1D0AA 1YY6A 2FOOA 3HQMA 1FLKA 4GWNA 1D0JA 2FOPA 5E1TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F1Z A;  1LB5 A;  4O1V A;  1CZY A;  3HU6 A;  4I7D A;  2AN6 A;  4KG9 A;  4GHU A;  2CR2 A;  3MQR A;  2XXN A;  1K2F A;  1KZZ A;  1LB6 A;  1CA9 A;  1ZMS A;  3HQL A;  1D00 A;  4JJQ A;  1CA4 A;  5H9M A;  4GJH A;  1LB4 A;  4GWM A;  2F1Y A;  3IVQ A;  4YSI A;  3HSV A;  2GKW A;  3HQI A;  4M4E A;  1F3V B;  1RF3 A;  3ZJB A;  4K8U A;  1QSC A;  1FLL A;  3IVB A;  3MQS C;  3HQH A;  2A25 A;  4I7B A;  4Z8M A;  1D01 A;  1CZZ A;  1L0A A;  2F1X A;  4X3G A;  2FOJ A;  1YZE A;  2F1W A;  4I7C A;  3IVV A;  4CA1 A;  4C9Z A;  1D0A A;  1YY6 A;  2FOO A;  3HQM A;  1FLK A;  4GWN A;  1D0J A;  2FOP A;  5E1T A; 
#chains in the Genus database with same CATH topology
 2F1Z A;  1LB5 A;  4O1V A;  1CZY A;  3HU6 A;  4I7D A;  2AN6 A;  4KG9 A;  4GHU A;  2CR2 A;  3MQR A;  2XXN A;  1K2F A;  1KZZ A;  1LB6 A;  1CA9 A;  1ZMS A;  3HQL A;  1D00 A;  4JJQ A;  1CA4 A;  5H9M A;  4GJH A;  1LB4 A;  4GWM A;  2F1Y A;  3IVQ A;  4YSI A;  3HSV A;  2GKW A;  3HQI A;  4M4E A;  1F3V B;  1RF3 A;  3ZJB A;  4K8U A;  1QSC A;  1FLL A;  3IVB A;  3MQS C;  3HQH A;  2A25 A;  4I7B A;  4Z8M A;  1D01 A;  1CZZ A;  1L0A A;  2F1X A;  4X3G A;  2FOJ A;  1YZE A;  2F1W A;  4I7C A;  3IVV A;  4CA1 A;  4C9Z A;  1D0A A;  1YY6 A;  2FOO A;  3HQM A;  1FLK A;  4GWN A;  1D0J A;  2FOP A;  5E1T A; 
#chains in the Genus database with same CATH homology
 2F1Z A;  1LB5 A;  4O1V A;  1CZY A;  3HU6 A;  4I7D A;  2AN6 A;  4KG9 A;  4GHU A;  2CR2 A;  3MQR A;  2XXN A;  1K2F A;  1KZZ A;  1LB6 A;  1CA9 A;  1ZMS A;  3HQL A;  1D00 A;  4JJQ A;  1CA4 A;  5H9M A;  4GJH A;  1LB4 A;  4GWM A;  2F1Y A;  3IVQ A;  4YSI A;  3HSV A;  2GKW A;  3HQI A;  4M4E A;  1F3V B;  1RF3 A;  3ZJB A;  4K8U A;  1QSC A;  1FLL A;  3IVB A;  3MQS C;  3HQH A;  2A25 A;  4I7B A;  4Z8M A;  1D01 A;  1CZZ A;  1L0A A;  2F1X A;  4X3G A;  2FOJ A;  1YZE A;  2F1W A;  4I7C A;  3IVV A;  4CA1 A;  4C9Z A;  1D0A A;  1YY6 A;  2FOO A;  3HQM A;  1FLK A;  4GWN A;  1D0J A;  2FOP A;  5E1T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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