1FBXA

Crystal structure of zinc-containing e.coli gtp cyclohydrolase i
Total Genus 65

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
221
structure length
221
Chain Sequence
PSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVRHHN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (32-50)AH3 (61-72)TI1 (53-56)TI2 (56-59)TI3 (57-60)3H1 (76-78)3H2 (80-82)S1 (88-90)S4 (130-132)TI5 (91-94)EMPTYS2 (99-110)AH4 (134-145)S5 (148-149)TI6 (110-113)AH5 (151-166)AH6 (180-184)S3 (115-125)O1 (169-171)S6 (171-179)AH7 (202-205)TII'1 (185-188)TI7 (189-192)S7 (194-200)AH8 (207-216)TIV3 (72-75)TIV5 (127-130)AH1 (5-17)Updating...
connected with : NaN
publication title Zinc plays a key role in human and bacterial GTP cyclohydrolase I.
pubmed doi rcsb
molecule keywords GTP CYCLOHYDROLASE I
molecule tags Hydrolase
source organism Escherichia coli
total genus 65
structure length 221
sequence length 221
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O
ec nomenclature ec 3.5.4.16: GTP cyclohydrolase I.
pdb deposition date 2000-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01227 GTP_cyclohydroI GTP cyclohydrolase I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.10 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 1fbxA01
3.30.1130.10 Alpha Beta 2-Layer Sandwich GTP Cyclohydrolase I, domain 2 GTP Cyclohydrolase I, domain 2 1fbxA02
1WURA 1FBXA 3R2EA 3UXVA 1NBUB 3RZPA 1A8RA 1IS8A 3UXJA 1FB1A 1WM9A 1RS2A 1A9CA 2NM3A 1RRYA 1NBUA 1RSIA 1RRIA 1RS4A 1IS7A 1GTPA 2O90A 1N3SA 2CG8A 1Z9WA 3V9OA 1N3RA 1B9LA 5F3MA 4AEYA 1N3TA 1U68A 3BP1A 3RJ4A 1RRWA 2NM2A 5FARA 4UQFA 1DHNA 1NBUC 4IQIA 4F8BA 1SQLA 1WUQA 3O1KA 4FGCA 4GHMA 2DHNA 1WPLA 4DU6A 1RSDA 3S19A
chains in the Genus database with same CATH superfamily
1WURA 3UXVA 1NBUB 3RZPA 1RSIA 1RS4A 2O90A 1GTPA 1N3SA 1EL6A 1B9LA 3BP1A 1RRWA 5FARA 4UQFA 1SQLA 4JA3A 4GHMA 2DHNA 2WSFK 4Q7JA 4E45B 1FBXA 4NE3B 1IS8A 1FB1A 1WM9A 1RS2A 2WSCG 2O01G 4DRAE 1TFEA 3V9OA 1N3RA 4AEYA 3VEJA 3RJ4A 2NM2A 1NBUC 2KR1A 4IQIA 1EFUB 3BMBA 4F8BA 1A8RA 1RRYA 2LO0A 2WSFG 2WSEK 4NE6B 1N3TA 4NE5B 4QPMA 1U68A 1AIPC 4FGCA 4DRBJ 1WPLA 3LW5K 2LNZA 3UXJA 2NM3A 1A9CA 3R2EA 1NBUA 1RRIA 1IS7A 3LW5G 2CG8A 1Z9WA 4R8QA 5F3MA 2WSEG 1DHNA 2P11A 1WUQA 3O1KA 2PN0A 3B0BC 2WSCK 5DMZA 4E44B 4DU6A 1RSDA 3S19A
chains in the Genus database with same CATH topology
1WURA 1FBXA 3R2EA 3UXVA 1NBUB 3RZPA 2LNZA 1A8RA 1IS8A 4NE3B 3UXJA 1FB1A 1WM9A 1RS2A 1A9CA 2NM3A 1RRYA 1NBUA 2LO0A 1RSIA 1RRIA 1IS7A 1GTPA 1RS4A 1N3SA 2O90A 4DRAE 2CG8A 1EL6A 1TFEA 4NE6B 1Z9WA 3V9OA 1N3RA 1B9LA 4R8QA 5F3MA 4AEYA 1N3TA 4NE5B 4QPMA 3VEJA 1U68A 3BP1A 3RJ4A 1RRWA 1AIPC 2NM2A 5FARA 4UQFA 1DHNA 1NBUC 2KR1A 4IQIA 1EFUB 4F8BA 1SQLA 2P11A 1WUQA 3O1KA 2PN0A 4FGCA 3B0BC 4JA3A 4DRBJ 4GHMA 2DHNA 5DMZA 4Q7JA 1WPLA 4E45B 4E44B 3BMBA 4DU6A 1RSDA 3S19A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WUR A;  1FBX A;  3R2E A;  3UXV A;  1NBU B;  3RZP A;  1A8R A;  1IS8 A;  3UXJ A;  1FB1 A;  1WM9 A;  1RS2 A;  1A9C A;  2NM3 A;  1RRY A;  1NBU A;  1RSI A;  1RRI A;  1RS4 A;  1IS7 A;  1GTP A;  2O90 A;  1N3S A;  2CG8 A;  1Z9W A;  3V9O A;  1N3R A;  1B9L A;  5F3M A;  4AEY A;  1N3T A;  1U68 A;  3BP1 A;  3RJ4 A;  1RRW A;  2NM2 A;  5FAR A;  4UQF A;  1DHN A;  1NBU C;  4IQI A;  4F8B A;  1SQL A;  1WUQ A;  3O1K A;  4FGC A;  4GHM A;  2DHN A;  1WPL A;  4DU6 A;  1RSD A;  3S19 A; 
#chains in the Genus database with same CATH topology
 1WUR A;  3UXV A;  1NBU B;  3RZP A;  1RSI A;  1RS4 A;  2O90 A;  1GTP A;  1N3S A;  1EL6 A;  1B9L A;  3BP1 A;  1RRW A;  5FAR A;  4UQF A;  1SQL A;  4JA3 A;  4GHM A;  2DHN A;  2WSF K;  4Q7J A;  4E45 B;  1FBX A;  4NE3 B;  1IS8 A;  1FB1 A;  1WM9 A;  1RS2 A;  2WSC G;  2O01 G;  4DRA E;  1TFE A;  3V9O A;  1N3R A;  4AEY A;  3VEJ A;  3RJ4 A;  2NM2 A;  1NBU C;  2KR1 A;  4IQI A;  1EFU B;  3BMB A;  4F8B A;  1A8R A;  1RRY A;  2LO0 A;  2WSF G;  2WSE K;  4NE6 B;  1N3T A;  4NE5 B;  4QPM A;  1U68 A;  1AIP C;  4FGC A;  4DRB J;  1WPL A;  3LW5 K;  2LNZ A;  3UXJ A;  2NM3 A;  1A9C A;  3R2E A;  1NBU A;  1RRI A;  1IS7 A;  3LW5 G;  2CG8 A;  1Z9W A;  4R8Q A;  5F3M A;  2WSE G;  1DHN A;  2P11 A;  1WUQ A;  3O1K A;  2PN0 A;  3B0B C;  2WSC K;  5DMZ A;  4E44 B;  4DU6 A;  1RSD A;  3S19 A; 
#chains in the Genus database with same CATH homology
 1WUR A;  1FBX A;  3R2E A;  3UXV A;  1NBU B;  3RZP A;  2LNZ A;  1A8R A;  1IS8 A;  4NE3 B;  3UXJ A;  1FB1 A;  1WM9 A;  1RS2 A;  1A9C A;  2NM3 A;  1RRY A;  1NBU A;  2LO0 A;  1RSI A;  1RRI A;  1IS7 A;  1GTP A;  1RS4 A;  1N3S A;  2O90 A;  4DRA E;  2CG8 A;  1EL6 A;  1TFE A;  4NE6 B;  1Z9W A;  3V9O A;  1N3R A;  1B9L A;  4R8Q A;  5F3M A;  4AEY A;  1N3T A;  4NE5 B;  4QPM A;  3VEJ A;  1U68 A;  3BP1 A;  3RJ4 A;  1RRW A;  1AIP C;  2NM2 A;  5FAR A;  4UQF A;  1DHN A;  1NBU C;  2KR1 A;  4IQI A;  1EFU B;  4F8B A;  1SQL A;  2P11 A;  1WUQ A;  3O1K A;  2PN0 A;  4FGC A;  3B0B C;  4JA3 A;  4DRB J;  4GHM A;  2DHN A;  5DMZ A;  4Q7J A;  1WPL A;  4E45 B;  4E44 B;  3BMB A;  4DU6 A;  1RSD A;  3S19 A; 
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