1FBXA

Crystal structure of zinc-containing e.coli gtp cyclohydrolase i
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
221
structure length
221
Chain Sequence
PSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVRHHN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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connected with : NaN
publication title Zinc plays a key role in human and bacterial GTP cyclohydrolase I.
pubmed doi rcsb
molecule keywords GTP CYCLOHYDROLASE I
molecule tags Hydrolase
source organism Escherichia coli
total genus 65
structure length 221
sequence length 221
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O
ec nomenclature ec 3.5.4.16: GTP cyclohydrolase I.
pdb deposition date 2000-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01227 GTP_cyclohydroI GTP cyclohydrolase I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.10 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 1fbxA01
3.30.1130.10 Alpha Beta 2-Layer Sandwich GTP Cyclohydrolase I, domain 2 GTP Cyclohydrolase I, domain 2 1fbxA02
3RJ4A 5FARA 1RRWA 4FGCA 1NBUA 2NM2A 1N3SA 4UQFA 3UXJA 1SQLA 1RS2A 3V9OA 1IS7A 1Z9WA 1WUQA 1GTPA 1U68A 1RSIA 3BP1A 4AEYA 4DU6A 3UXVA 1RRIA 1A9CA 1WM9A 2CG8A 4F8BA 1A8RA 1WURA 3R2EA 1N3RA 2NM3A 1N3TA 1RRYA 1DHNA 3RZPA 1B9LA 1NBUB 1RSDA 3O1KA 3S19A 1WPLA 1FBXA 4GHMA 5F3MA 1FB1A 2DHNA 1NBUC 1IS8A 2O90A 4IQIA 1RS4A
chains in the Genus database with same CATH superfamily
3RJ4A 5FARA 1N3SA 3V9OA 1TFEA 2WSEK 1WUQA 4AEYA 4R8QA 1A9CA 4F8BA 1A8RA 4E45B 1N3RA 2LO0A 4NE6B 4Q7JA 3LW5K 1RSDA 1WPLA 1FBXA 4GHMA 5F3MA 1IS8A 2WSFK 2WSCK 4NE5B 4NE3B 4FGCA 2NM2A 1SQLA 1IS7A 3UXVA 3LW5G 1N3TA 1RRYA 1DHNA 3RZPA 1B9LA 4JA3A 3S19A 3B0BC 1FB1A 2P11A 2DHNA 1NBUC 2PN0A 1RRWA 2WSEG 2O01G 3UXJA 1RS2A 4E44B 1U68A 3BP1A 2LNZA 4DU6A 5DMZA 1WM9A 1WURA 4DRBJ 3R2EA 2KR1A 2NM3A 1EL6A 3BMBA 1NBUB 2WSFG 2WSCG 2O90A 1RS4A 1AIPC 1EFUB 1NBUA 4UQFA 1Z9WA 1GTPA 1RSIA 1RRIA 3VEJA 2CG8A 3O1KA 4QPMA 4DRAE 4IQIA
chains in the Genus database with same CATH topology
3RJ4A 5FARA 2PN0A 1AIPC 4NE3B 4NE5B 1EFUB 1RRWA 4FGCA 1NBUA 2NM2A 1N3SA 4UQFA 3UXJA 1SQLA 1RS2A 3V9OA 1IS7A 1TFEA 1Z9WA 1WUQA 1GTPA 4E44B 1RSIA 1U68A 3BP1A 4AEYA 2LNZA 4DU6A 3UXVA 1RRIA 3VEJA 4R8QA 1A9CA 5DMZA 4DRAE 1WM9A 2CG8A 4F8BA 1A8RA 1WURA 4DRBJ 1N3RA 2KR1A 4E45B 2NM3A 1N3TA 3R2EA 1RRYA 1DHNA 3RZPA 2LO0A 4NE6B 4Q7JA 1EL6A 3BMBA 1B9LA 1NBUB 1RSDA 3O1KA 4QPMA 4JA3A 3S19A 1WPLA 1FBXA 4GHMA 3B0BC 5F3MA 1FB1A 2P11A 2DHNA 1NBUC 1IS8A 2O90A 4IQIA 1RS4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RJ4 A;  5FAR A;  1RRW A;  4FGC A;  1NBU A;  2NM2 A;  1N3S A;  4UQF A;  3UXJ A;  1SQL A;  1RS2 A;  3V9O A;  1IS7 A;  1Z9W A;  1WUQ A;  1GTP A;  1U68 A;  1RSI A;  3BP1 A;  4AEY A;  4DU6 A;  3UXV A;  1RRI A;  1A9C A;  1WM9 A;  2CG8 A;  4F8B A;  1A8R A;  1WUR A;  3R2E A;  1N3R A;  2NM3 A;  1N3T A;  1RRY A;  1DHN A;  3RZP A;  1B9L A;  1NBU B;  1RSD A;  3O1K A;  3S19 A;  1WPL A;  1FBX A;  4GHM A;  5F3M A;  1FB1 A;  2DHN A;  1NBU C;  1IS8 A;  2O90 A;  4IQI A;  1RS4 A; 
#chains in the Genus database with same CATH topology
 3RJ4 A;  5FAR A;  1N3S A;  3V9O A;  1TFE A;  2WSE K;  1WUQ A;  4AEY A;  4R8Q A;  1A9C A;  4F8B A;  1A8R A;  4E45 B;  1N3R A;  2LO0 A;  4NE6 B;  4Q7J A;  3LW5 K;  1RSD A;  1WPL A;  1FBX A;  4GHM A;  5F3M A;  1IS8 A;  2WSF K;  2WSC K;  4NE5 B;  4NE3 B;  4FGC A;  2NM2 A;  1SQL A;  1IS7 A;  3UXV A;  3LW5 G;  1N3T A;  1RRY A;  1DHN A;  3RZP A;  1B9L A;  4JA3 A;  3S19 A;  3B0B C;  1FB1 A;  2P11 A;  2DHN A;  1NBU C;  2PN0 A;  1RRW A;  2WSE G;  2O01 G;  3UXJ A;  1RS2 A;  4E44 B;  1U68 A;  3BP1 A;  2LNZ A;  4DU6 A;  5DMZ A;  1WM9 A;  1WUR A;  4DRB J;  3R2E A;  2KR1 A;  2NM3 A;  1EL6 A;  3BMB A;  1NBU B;  2WSF G;  2WSC G;  2O90 A;  1RS4 A;  1AIP C;  1EFU B;  1NBU A;  4UQF A;  1Z9W A;  1GTP A;  1RSI A;  1RRI A;  3VEJ A;  2CG8 A;  3O1K A;  4QPM A;  4DRA E;  4IQI A; 
#chains in the Genus database with same CATH homology
 3RJ4 A;  5FAR A;  2PN0 A;  1AIP C;  4NE3 B;  4NE5 B;  1EFU B;  1RRW A;  4FGC A;  1NBU A;  2NM2 A;  1N3S A;  4UQF A;  3UXJ A;  1SQL A;  1RS2 A;  3V9O A;  1IS7 A;  1TFE A;  1Z9W A;  1WUQ A;  1GTP A;  4E44 B;  1RSI A;  1U68 A;  3BP1 A;  4AEY A;  2LNZ A;  4DU6 A;  3UXV A;  1RRI A;  3VEJ A;  4R8Q A;  1A9C A;  5DMZ A;  4DRA E;  1WM9 A;  2CG8 A;  4F8B A;  1A8R A;  1WUR A;  4DRB J;  1N3R A;  2KR1 A;  4E45 B;  2NM3 A;  1N3T A;  3R2E A;  1RRY A;  1DHN A;  3RZP A;  2LO0 A;  4NE6 B;  4Q7J A;  1EL6 A;  3BMB A;  1B9L A;  1NBU B;  1RSD A;  3O1K A;  4QPM A;  4JA3 A;  3S19 A;  1WPL A;  1FBX A;  4GHM A;  3B0B C;  5F3M A;  1FB1 A;  2P11 A;  2DHN A;  1NBU C;  1IS8 A;  2O90 A;  4IQI A;  1RS4 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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