1IR1 | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	122
structure length	122
Chain Sequence	KVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 122 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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122 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate. pubmed doi rcsb
molecule keywords	Large subunit of Rubisco
molecule tags	Lyase
total genus	27
structure length	122
sequence length	122
chains with identical sequence	T, U, V
ec nomenclature	ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date	2001-08-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
S	PF00101	RuBisCO_small	Ribulose bisphosphate carboxylase, small chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.190.10	Alpha Beta	2-Layer Sandwich	Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase	Ribulose bisphosphate carboxylase, small subunit	1ir1S00

2YBVB 3ZXWB 4HHHS 1WDDS 1SVDM 1UPPI 2V67I 2V63I 1UPMC 1AA1C 3RUBS 4F0HB 2VDII 1RSCI 1BWVS 1RXOC 1GK8I 1RLCS 1RCXC 3AXMS 2VDHI 3AXKS 1BXNI 2V68I 2V69I 1UZHC 4RUBS 1EJ7S 2V6AI 4F0MB 1IWAB 1AUSS 1UWAC 1RBOC 1IR1S 1IR21 1UZDC 1RCOC 8RUCI 4F0KB 1RLDS 1RBLI 4MKVS 1UW9C
chains in the Genus database with same CATH superfamily

2YBVB 3ZXWB 4QVIA 4HHHS 1WDDS 1SVDM 1UPPI 2V67I 2V63I 3FPNA 4QGBA 1MZPA 1UPMC 3TG8A 1AA1C 3RUBS 4F0HB 2VDII 2DFXI 2FHZA 5DM60 1RSCI 1BWVS 1RXOC 3ZQJA 1DWUA 1GK8I 1RLCS 1AD2A 1RCXC 3AXMS 2VDHI 3AXKS 1BXNI 2V68I 2V69I 4DFCB 3U56A 1UZHC 2HW8A 4LQ4A 4RUBS 1EJ7S 2V6AI 4F0MB 3U4MA 1I2AA 5DM70 1ZHOA 1IWAB 1AUSS 1UWAC 4QG3A 1RBOC 1U63A 1IR1S 1IR21 3QOYA 3UMYA 1UZDC 1RCOC 8RUCI 1CJSA 4F0KB 1RLDS 1RBLI 4MKVS 4REOA 4F9TA 1UW9C
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2YBV B;  3ZXW B;  4HHH S;  1WDD S;  1SVD M;  1UPP I;  2V67 I;  2V63 I;  1UPM C;  1AA1 C;  3RUB S;  4F0H B;  2VDI I;  1RSC I;  1BWV S;  1RXO C;  1GK8 I;  1RLC S;  1RCX C;  3AXM S;  2VDH I;  3AXK S;  1BXN I;  2V68 I;  2V69 I;  1UZH C;  4RUB S;  1EJ7 S;  2V6A I;  4F0M B;  1IWA B;  1AUS S;  1UWA C;  1RBO C;  1IR1 S;  1IR2 1;  1UZD C;  1RCO C;  8RUC I;  4F0K B;  1RLD S;  1RBL I;  4MKV S;  1UW9 C; 
#chains in the Genus database with same CATH topology
 2YBV B;  3ZXW B;  4QVI A;  4HHH S;  1WDD S;  1SVD M;  1UPP I;  2V67 I;  2V63 I;  3FPN A;  4QGB A;  1MZP A;  1UPM C;  3TG8 A;  1AA1 C;  3RUB S;  4F0H B;  2VDI I;  2DFX I;  2FHZ A;  5DM6 0;  1RSC I;  1BWV S;  1RXO C;  3ZQJ A;  1DWU A;  1GK8 I;  1RLC S;  1AD2 A;  1RCX C;  3AXM S;  2VDH I;  3AXK S;  1BXN I;  2V68 I;  2V69 I;  4DFC B;  3U56 A;  1UZH C;  2HW8 A;  4LQ4 A;  4RUB S;  1EJ7 S;  2V6A I;  4F0M B;  3U4M A;  1I2A A;  5DM7 0;  1ZHO A;  1IWA B;  1AUS S;  1UWA C;  4QG3 A;  1RBO C;  1U63 A;  1IR1 S;  1IR2 1;  3QOY A;  3UMY A;  1UZD C;  1RCO C;  8RUC I;  1CJS A;  4F0K B;  1RLD S;  1RBL I;  4MKV S;  4REO A;  4F9T A;  1UW9 C; 
#chains in the Genus database with same CATH homology
 2YBV B;  3ZXW B;  4HHH S;  1WDD S;  1SVD M;  1UPP I;  2V67 I;  2V63 I;  1UPM C;  1AA1 C;  3RUB S;  4F0H B;  2VDI I;  1RSC I;  1BWV S;  1RXO C;  1GK8 I;  1RLC S;  1RCX C;  3AXM S;  2VDH I;  3AXK S;  1BXN I;  2V68 I;  2V69 I;  1UZH C;  4RUB S;  1EJ7 S;  2V6A I;  4F0M B;  1IWA B;  1AUS S;  1UWA C;  1RBO C;  1IR1 S;  1IR2 1;  1UZD C;  1RCO C;  8RUC I;  4F0K B;  1RLD S;  1RBL I;  4MKV S;  1UW9 C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1IR1S

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations