1IWAB

Rubisco from galdieria partita
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
138
structure length
138
Chain Sequence
MRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGFNLMRQEDKSRSIKYTIHSYESYKPEDERY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV3 (94-97)TI1 (13-16)TI2 (15-18)S2 (68-74)TI3 (49-64)S1 (39-45)TII'1 (134-137)S5 (126-132)TIV1 (45-48)S3 (98-105)TIV2 (74-77)S6 (138-144)TI4 (107-108)S4 (110-118)TIV5 (133-136)AH1 (23-36)AH2 (80-94)TVIII1 (64-67)TVIII2 (120-123)Updating...
connected with : NaN
publication title X-Ray Structure of Galdieria Rubisco Complexed with one sulfate ion per active site
pubmed doi rcsb
molecule keywords ribulose-1,5-bisphosphate carboxylase/oxygenase large subuni
molecule tags Lyase
total genus 32
structure length 138
sequence length 138
chains with identical sequence D, F, H, J, L, N, P
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2002-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 1iwaB00
4F0MB 1WDDS 1AA1C 1UPPI 3ZXWB 2V68I 1BWVS 2V6AI 1RBOC 1RLDS 1RSCI 2V69I 2V67I 1BXNI 8RUCI 1GK8I 1IR1S 1SVDM 1IWAB 1AUSS 1RLCS 1UW9C 4RUBS 1UPMC 2VDHI 3RUBS 4F0HB 2YBVB 1IR21 1UWAC 1RBLI 4F0KB 1RCXC 3AXMS 3AXKS 2VDII 1RCOC 4HHHS 4MKVS 1UZDC 1UZHC 1EJ7S 2V63I 1RXOC
chains in the Genus database with same CATH superfamily
4F0MB 5DM60 1WDDS 3TG8A 5DM70 1AA1C 1UPPI 3ZXWB 2V68I 1BWVS 2V6AI 4LQ4A 4QVIA 1RBOC 1RLDS 1RSCI 2V69I 2DFXI 1BXNI 2V67I 3FPNA 4QGBA 8RUCI 3U4MA 1GK8I 3QOYA 1IR1S 1I2AA 1IWAB 1SVDM 4REOA 1AUSS 3UMYA 1RLCS 1ZHOA 4QG3A 1UW9C 4RUBS 2HW8A 1UPMC 2VDHI 1DWUA 4DFCB 1AD2A 3RUBS 4F0HB 4F9TA 2YBVB 1IR21 2FHZA 3U56A 1UWAC 1CJSA 1RBLI 4F0KB 1MZPA 1RCXC 3ZQJA 3AXMS 3AXKS 2VDII 1RCOC 4HHHS 4MKVS 1U63A 1UZDC 1UZHC 1EJ7S 2V63I 1RXOC
chains in the Genus database with same CATH topology
4F0MB 1WDDS 1AA1C 1UPPI 3ZXWB 2V68I 1BWVS 2V6AI 1RBOC 1RLDS 1RSCI 2V69I 2V67I 1BXNI 8RUCI 1GK8I 1IR1S 1SVDM 1IWAB 1AUSS 1RLCS 1UW9C 4RUBS 1UPMC 2VDHI 3RUBS 4F0HB 2YBVB 1IR21 1UWAC 1RBLI 4F0KB 1RCXC 3AXMS 3AXKS 2VDII 1RCOC 4HHHS 4MKVS 1UZDC 1UZHC 1EJ7S 2V63I 1RXOC
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4F0M B;  1WDD S;  1AA1 C;  1UPP I;  3ZXW B;  2V68 I;  1BWV S;  2V6A I;  1RBO C;  1RLD S;  1RSC I;  2V69 I;  2V67 I;  1BXN I;  8RUC I;  1GK8 I;  1IR1 S;  1SVD M;  1IWA B;  1AUS S;  1RLC S;  1UW9 C;  4RUB S;  1UPM C;  2VDH I;  3RUB S;  4F0H B;  2YBV B;  1IR2 1;  1UWA C;  1RBL I;  4F0K B;  1RCX C;  3AXM S;  3AXK S;  2VDI I;  1RCO C;  4HHH S;  4MKV S;  1UZD C;  1UZH C;  1EJ7 S;  2V63 I;  1RXO C; 
#chains in the Genus database with same CATH topology
 4F0M B;  5DM6 0;  1WDD S;  3TG8 A;  5DM7 0;  1AA1 C;  1UPP I;  3ZXW B;  2V68 I;  1BWV S;  2V6A I;  4LQ4 A;  4QVI A;  1RBO C;  1RLD S;  1RSC I;  2V69 I;  2DFX I;  1BXN I;  2V67 I;  3FPN A;  4QGB A;  8RUC I;  3U4M A;  1GK8 I;  3QOY A;  1IR1 S;  1I2A A;  1IWA B;  1SVD M;  4REO A;  1AUS S;  3UMY A;  1RLC S;  1ZHO A;  4QG3 A;  1UW9 C;  4RUB S;  2HW8 A;  1UPM C;  2VDH I;  1DWU A;  4DFC B;  1AD2 A;  3RUB S;  4F0H B;  4F9T A;  2YBV B;  1IR2 1;  2FHZ A;  3U56 A;  1UWA C;  1CJS A;  1RBL I;  4F0K B;  1MZP A;  1RCX C;  3ZQJ A;  3AXM S;  3AXK S;  2VDI I;  1RCO C;  4HHH S;  4MKV S;  1U63 A;  1UZD C;  1UZH C;  1EJ7 S;  2V63 I;  1RXO C; 
#chains in the Genus database with same CATH homology
 4F0M B;  1WDD S;  1AA1 C;  1UPP I;  3ZXW B;  2V68 I;  1BWV S;  2V6A I;  1RBO C;  1RLD S;  1RSC I;  2V69 I;  2V67 I;  1BXN I;  8RUC I;  1GK8 I;  1IR1 S;  1SVD M;  1IWA B;  1AUS S;  1RLC S;  1UW9 C;  4RUB S;  1UPM C;  2VDH I;  3RUB S;  4F0H B;  2YBV B;  1IR2 1;  1UWA C;  1RBL I;  4F0K B;  1RCX C;  3AXM S;  3AXK S;  2VDI I;  1RCO C;  4HHH S;  4MKV S;  1UZD C;  1UZH C;  1EJ7 S;  2V63 I;  1RXO C;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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