1L0A | Genus

Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	46
sequence length	192
structure length	192
Chain Sequence	NTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLPDP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 192 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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192 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Signaling protein
source organism	Homo sapiens
publication title	Downstream regulator TANK binds to the CD40 recognition site on TRAF3. pubmed doi rcsb
molecule keywords	TNF receptor associated factor 3
total genus	46
structure length	192
sequence length	192
ec nomenclature	ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date	2002-02-08

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	1l0aA00

1LB6A 4GJHA 3HQMA 3IVQA 4JJQA 2A25A 1FLKA 3HQHA 4Z8MA 1D0JA 2F1ZA 2FOOA 2GKWA 3HSVA 4M4EA 4X3GA 2F1WA 4YSIA 2FOPA 1YZEA 1D01A 1CA9A 1FLLA 1F3VB 5E1TA 1K2FA 2F1XA 1CA4A 4GWMA 1RF3A 1KZZA 1L0AA 3HQLA 3ZJBA 1QSCA 4GWNA 4O1VA 1LB4A 4GHUA 4CA1A 2CR2A 3IVBA 4I7DA 3HU6A 4KG9A 1D0AA 2XXNA 3MQRA 1D00A 1LB5A 3HQIA 1CZYA 5H9MA 1CZZA 1ZMSA 2F1YA 1YY6A 4I7CA 4C9ZA 3IVVA 2FOJA 3MQSC 4I7BA 4K8UA 2AN6A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1LB6 A;  4GJH A;  3HQM A;  3IVQ A;  4JJQ A;  2A25 A;  1FLK A;  3HQH A;  4Z8M A;  1D0J A;  2F1Z A;  2FOO A;  2GKW A;  3HSV A;  4M4E A;  4X3G A;  2F1W A;  4YSI A;  2FOP A;  1YZE A;  1D01 A;  1CA9 A;  1FLL A;  1F3V B;  5E1T A;  1K2F A;  2F1X A;  1CA4 A;  4GWM A;  1RF3 A;  1KZZ A;  1L0A A;  3HQL A;  3ZJB A;  1QSC A;  4GWN A;  4O1V A;  1LB4 A;  4GHU A;  4CA1 A;  2CR2 A;  3IVB A;  4I7D A;  3HU6 A;  4KG9 A;  1D0A A;  2XXN A;  3MQR A;  1D00 A;  1LB5 A;  3HQI A;  1CZY A;  5H9M A;  1CZZ A;  1ZMS A;  2F1Y A;  1YY6 A;  4I7C A;  4C9Z A;  3IVV A;  2FOJ A;  3MQS C;  4I7B A;  4K8U A;  2AN6 A; 
#chains in the Genus database with same CATH topology
 1LB6 A;  4GJH A;  3HQM A;  3IVQ A;  4JJQ A;  2A25 A;  1FLK A;  3HQH A;  4Z8M A;  1D0J A;  2F1Z A;  2FOO A;  2GKW A;  3HSV A;  4M4E A;  4X3G A;  2F1W A;  4YSI A;  2FOP A;  1YZE A;  1D01 A;  1CA9 A;  1FLL A;  1F3V B;  5E1T A;  1K2F A;  2F1X A;  1CA4 A;  4GWM A;  1RF3 A;  1KZZ A;  1L0A A;  3HQL A;  3ZJB A;  1QSC A;  4GWN A;  4O1V A;  1LB4 A;  4GHU A;  4CA1 A;  2CR2 A;  3IVB A;  4I7D A;  3HU6 A;  4KG9 A;  1D0A A;  2XXN A;  3MQR A;  1D00 A;  1LB5 A;  3HQI A;  1CZY A;  5H9M A;  1CZZ A;  1ZMS A;  2F1Y A;  1YY6 A;  4I7C A;  4C9Z A;  3IVV A;  2FOJ A;  3MQS C;  4I7B A;  4K8U A;  2AN6 A; 
#chains in the Genus database with same CATH homology
 1LB6 A;  4GJH A;  3HQM A;  3IVQ A;  4JJQ A;  2A25 A;  1FLK A;  3HQH A;  4Z8M A;  1D0J A;  2F1Z A;  2FOO A;  2GKW A;  3HSV A;  4M4E A;  4X3G A;  2F1W A;  4YSI A;  2FOP A;  1YZE A;  1D01 A;  1CA9 A;  1FLL A;  1F3V B;  5E1T A;  1K2F A;  2F1X A;  1CA4 A;  4GWM A;  1RF3 A;  1KZZ A;  1L0A A;  3HQL A;  3ZJB A;  1QSC A;  4GWN A;  4O1V A;  1LB4 A;  4GHU A;  4CA1 A;  2CR2 A;  3IVB A;  4I7D A;  3HU6 A;  4KG9 A;  1D0A A;  2XXN A;  3MQR A;  1D00 A;  1LB5 A;  3HQI A;  1CZY A;  5H9M A;  1CZZ A;  1ZMS A;  2F1Y A;  1YY6 A;  4I7C A;  4C9Z A;  3IVV A;  2FOJ A;  3MQS C;  4I7B A;  4K8U A;  2AN6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1L0AA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization