1LB6A

Traf6-cd40 complex
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
155
structure length
155
Chain Sequence
QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVST
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
source organism Homo sapiens
publication title Distinct molecular mechanism for initiating TRAF6 signalling.
pubmed doi rcsb
molecule keywords TNF receptor-associated factor 6
total genus 27
structure length 155
sequence length 155
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2002-04-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1lb6A00
3HQMA 4K8UA 1CZZA 2GKWA 1CA4A 2FOPA 1D0JA 3MQSC 1D0AA 1RF3A 3IVBA 2F1YA 1D01A 3MQRA 1F3VB 1CZYA 4M4EA 1FLLA 1FLKA 5E1TA 4Z8MA 1D00A 2F1XA 3IVQA 4GJHA 4I7CA 5H9MA 1LB5A 4O1VA 4X3GA 2XXNA 3HSVA 4CA1A 1YZEA 2A25A 3HU6A 4GHUA 1QSCA 3ZJBA 3HQHA 4KG9A 2FOJA 4JJQA 1CA9A 2CR2A 4I7BA 1L0AA 2FOOA 3IVVA 4C9ZA 1ZMSA 3HQIA 2AN6A 3HQLA 2F1WA 1LB4A 1KZZA 4YSIA 4I7DA 1LB6A 1K2FA 4GWNA 4GWMA 1YY6A 2F1ZA
chains in the Genus database with same CATH superfamily
3HQMA 4K8UA 1CZZA 2GKWA 1CA4A 2FOPA 1D0JA 3MQSC 1D0AA 1RF3A 3IVBA 2F1YA 1D01A 3MQRA 1F3VB 1CZYA 4M4EA 1FLLA 1FLKA 5E1TA 4Z8MA 1D00A 2F1XA 3IVQA 4GJHA 4I7CA 5H9MA 1LB5A 4O1VA 4X3GA 2XXNA 3HSVA 4CA1A 1YZEA 2A25A 3HU6A 4GHUA 1QSCA 3ZJBA 3HQHA 4KG9A 2FOJA 4JJQA 1CA9A 2CR2A 4I7BA 1L0AA 2FOOA 3IVVA 4C9ZA 1ZMSA 3HQIA 2AN6A 3HQLA 2F1WA 1LB4A 1KZZA 4YSIA 4I7DA 1LB6A 1K2FA 4GWNA 4GWMA 1YY6A 2F1ZA
chains in the Genus database with same CATH topology
3HQMA 4K8UA 1CZZA 2GKWA 1CA4A 2FOPA 1D0JA 3MQSC 1D0AA 1RF3A 3IVBA 2F1YA 1D01A 3MQRA 1F3VB 1CZYA 4M4EA 1FLLA 1FLKA 5E1TA 4Z8MA 1D00A 2F1XA 3IVQA 4GJHA 4I7CA 5H9MA 1LB5A 4O1VA 4X3GA 2XXNA 3HSVA 4CA1A 1YZEA 2A25A 3HU6A 4GHUA 1QSCA 3ZJBA 3HQHA 4KG9A 2FOJA 4JJQA 1CA9A 2CR2A 4I7BA 1L0AA 2FOOA 3IVVA 4C9ZA 1ZMSA 3HQIA 2AN6A 3HQLA 2F1WA 1LB4A 1KZZA 4YSIA 4I7DA 1LB6A 1K2FA 4GWNA 4GWMA 1YY6A 2F1ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HQM A;  4K8U A;  1CZZ A;  2GKW A;  1CA4 A;  2FOP A;  1D0J A;  3MQS C;  1D0A A;  1RF3 A;  3IVB A;  2F1Y A;  1D01 A;  3MQR A;  1F3V B;  1CZY A;  4M4E A;  1FLL A;  1FLK A;  5E1T A;  4Z8M A;  1D00 A;  2F1X A;  3IVQ A;  4GJH A;  4I7C A;  5H9M A;  1LB5 A;  4O1V A;  4X3G A;  2XXN A;  3HSV A;  4CA1 A;  1YZE A;  2A25 A;  3HU6 A;  4GHU A;  1QSC A;  3ZJB A;  3HQH A;  4KG9 A;  2FOJ A;  4JJQ A;  1CA9 A;  2CR2 A;  4I7B A;  1L0A A;  2FOO A;  3IVV A;  4C9Z A;  1ZMS A;  3HQI A;  2AN6 A;  3HQL A;  2F1W A;  1LB4 A;  1KZZ A;  4YSI A;  4I7D A;  1LB6 A;  1K2F A;  4GWN A;  4GWM A;  1YY6 A;  2F1Z A; 
#chains in the Genus database with same CATH topology
 3HQM A;  4K8U A;  1CZZ A;  2GKW A;  1CA4 A;  2FOP A;  1D0J A;  3MQS C;  1D0A A;  1RF3 A;  3IVB A;  2F1Y A;  1D01 A;  3MQR A;  1F3V B;  1CZY A;  4M4E A;  1FLL A;  1FLK A;  5E1T A;  4Z8M A;  1D00 A;  2F1X A;  3IVQ A;  4GJH A;  4I7C A;  5H9M A;  1LB5 A;  4O1V A;  4X3G A;  2XXN A;  3HSV A;  4CA1 A;  1YZE A;  2A25 A;  3HU6 A;  4GHU A;  1QSC A;  3ZJB A;  3HQH A;  4KG9 A;  2FOJ A;  4JJQ A;  1CA9 A;  2CR2 A;  4I7B A;  1L0A A;  2FOO A;  3IVV A;  4C9Z A;  1ZMS A;  3HQI A;  2AN6 A;  3HQL A;  2F1W A;  1LB4 A;  1KZZ A;  4YSI A;  4I7D A;  1LB6 A;  1K2F A;  4GWN A;  4GWM A;  1YY6 A;  2F1Z A; 
#chains in the Genus database with same CATH homology
 3HQM A;  4K8U A;  1CZZ A;  2GKW A;  1CA4 A;  2FOP A;  1D0J A;  3MQS C;  1D0A A;  1RF3 A;  3IVB A;  2F1Y A;  1D01 A;  3MQR A;  1F3V B;  1CZY A;  4M4E A;  1FLL A;  1FLK A;  5E1T A;  4Z8M A;  1D00 A;  2F1X A;  3IVQ A;  4GJH A;  4I7C A;  5H9M A;  1LB5 A;  4O1V A;  4X3G A;  2XXN A;  3HSV A;  4CA1 A;  1YZE A;  2A25 A;  3HU6 A;  4GHU A;  1QSC A;  3ZJB A;  3HQH A;  4KG9 A;  2FOJ A;  4JJQ A;  1CA9 A;  2CR2 A;  4I7B A;  1L0A A;  2FOO A;  3IVV A;  4C9Z A;  1ZMS A;  3HQI A;  2AN6 A;  3HQL A;  2F1W A;  1LB4 A;  1KZZ A;  4YSI A;  4I7D A;  1LB6 A;  1K2F A;  4GWN A;  4GWM A;  1YY6 A;  2F1Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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