The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
102
|
sequence length |
328
|
structure length |
328
|
Chain Sequence |
VKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTNRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLNELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKMIVNTQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of Escherichia coli PdxA, an Enzyme Involved in the Pyridoxal Phosphate Biosynthesis Pathway
pubmed doi rcsb |
| molecule keywords |
4-hydroxythreonine-4-phosphate dehydrogenase
|
| molecule tags |
Oxidoreductase
|
| source organism |
Escherichia coli
|
| total genus |
102
|
| structure length |
328
|
| sequence length |
328
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
1.1.1.262: 4-hydroxythreonine-4-phosphate dehydrogenase. |
| pdb deposition date | 2003-06-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04166 | PdxA | Pyridoxal phosphate biosynthetic protein PdxA |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Isopropylmalate Dehydrogenase | Isopropylmalate Dehydrogenase |
#chains in the Genus database with same CATH superfamily 4L03 A; 5GRL B; 1IPD A; 5ICD A; 3BLV A; 2UXQ A; 1W0D A; 1GRP A; 1LWD A; 1T09 A; 1P8F A; 1U7N A; 2DHT A; 1CM7 A; 3AH3 A; 2Y42 A; 4Y1P A; 3MAS A; 3MAS B; 1SJS A; 3VMJ A; 1YXO A; 1XAD A; 1OSI A; 1V5B A; 2E0C A; 5K11 A; 4AJR A; 2HI1 A; 5J32 A; 4L06 A; 4AOV A; 1PS6 A; 3ICD A; 1CW4 A; 4I3L A; 6ICD A; 1WPW A; 1YCO A; 2IV0 A; 5J34 A; 2QFY A; 3WZY A; 3DMS A; 1XKD A; 3U9E A; 5GRI A; 2Y41 A; 4L04 A; 1DR0 A; 2Y40 A; 1CW1 A; 3MAR A; 7ICD A; 5GRF B; 4AJC A; 3VL7 A; 2D4V A; 2QFV A; 2D1C A; 3VL2 A; 1IDM A; 3INM A; 3ASJ A; 4YB4 A; 1TYO A; 5GRL A; 2ZTW A; 1X0L A; 1IDD A; 4JA8 A; 1HQS A; 1BL5 A; 2Y3Z A; 9ICD A; 3TSN A; 3VML A; 3UF6 A; 1AI2 A; 4XRX A; 4XXV A; 1HJ6 A; 4XS3 A; 3FMX X; 4KZO A; 1IDE A; 1G2U A; 3VMK A; 4AJB A; 3LCB C; 4WUO A; 8ICD A; 3VL3 A; 1CNZ A; 3TY3 A; 1VI1 A; 5J33 A; 3VKZ A; 5K10 A; 1IKA A; 5GRF A; 1WAL A; 5HN3 A; 1T0L A; 3UDO A; 1DR8 A; 3U1H A; 1HEX A; 5L57 A; 4AOU A; 4JQP A; 1AI3 A; 3UDU A; 4AJS A; 1A05 A; 3US8 A; 4ATY A; 2QFX A; 3VL6 A; 4BNP A; 1VLC A; 4F7I A; 5GRE A; 1CW7 A; 5GRE B; 5I96 A; 1XAC A; 4UMX A; 3WZX A; 1XAB A; 1GRO A; 4AJ3 A; 4AOY A; 1PTM A; 2QFW A; 5L58 A; 5HN4 A; 4HCX A; 1XAA A; 2E5M A; 3R8W A; 1PS7 A; 4P69 C; 3TY4 A; 3BLX A; 3BLX B; 3WZW A; 3BLV B; 4AJA A; 1DPZ A; 1IDC A; 2AYQ A; 5LGE A; 1IDF A; 1OSJ A; 1R8K A; 5DE1 A; 3VL4 A; 4UMY A; 5GRH A; 5GRH B; 1V53 A; 1PB3 A; 3LXY A; 2UXR A; 5HN5 A; 1ZOR A; 1GC9 A; 1V94 A; 3TNG A; 1ISO A; 4IWH A; 1GC8 A; 2G4O A; 3MAP A; 5GRI B; 4I3K A; 3WZV A; 5I95 A; 1XGV A; 3FLK A; 5HN6 A; 1PB1 A; 4ICD A; #chains in the Genus database with same CATH topology 4L03 A; 5GRL B; 1IPD A; 5ICD A; 3BLV A; 2UXQ A; 1W0D A; 1GRP A; 1LWD A; 1T09 A; 1P8F A; 1U7N A; 2DHT A; 1CM7 A; 3AH3 A; 2Y42 A; 4Y1P A; 3MAS A; 3MAS B; 1SJS A; 3VMJ A; 1YXO A; 1XAD A; 1OSI A; 1V5B A; 2E0C A; 5K11 A; 4AJR A; 2HI1 A; 5J32 A; 4L06 A; 4AOV A; 1PS6 A; 3ICD A; 1CW4 A; 4I3L A; 6ICD A; 1WPW A; 1YCO A; 2IV0 A; 5J34 A; 2QFY A; 3WZY A; 3DMS A; 1XKD A; 3U9E A; 5GRI A; 2Y41 A; 4L04 A; 1DR0 A; 2Y40 A; 1CW1 A; 3MAR A; 7ICD A; 5GRF B; 4AJC A; 3VL7 A; 2D4V A; 2QFV A; 2D1C A; 3VL2 A; 1IDM A; 3INM A; 3ASJ A; 4YB4 A; 1TYO A; 5GRL A; 2ZTW A; 1X0L A; 1IDD A; 4JA8 A; 1HQS A; 1BL5 A; 2Y3Z A; 9ICD A; 3TSN A; 3VML A; 3UF6 A; 1AI2 A; 4XRX A; 4XXV A; 1HJ6 A; 4XS3 A; 3FMX X; 4KZO A; 1IDE A; 1G2U A; 3VMK A; 4AJB A; 3LCB C; 4WUO A; 8ICD A; 3VL3 A; 1CNZ A; 3TY3 A; 1VI1 A; 5J33 A; 3VKZ A; 5K10 A; 1IKA A; 5GRF A; 1WAL A; 5HN3 A; 1T0L A; 3UDO A; 1DR8 A; 3U1H A; 1HEX A; 5L57 A; 4AOU A; 4JQP A; 1AI3 A; 3UDU A; 4AJS A; 1A05 A; 3US8 A; 4ATY A; 2QFX A; 3VL6 A; 4BNP A; 1VLC A; 4F7I A; 5GRE A; 1CW7 A; 5GRE B; 5I96 A; 1XAC A; 4UMX A; 3WZX A; 1XAB A; 1GRO A; 4AJ3 A; 4AOY A; 1PTM A; 2QFW A; 5L58 A; 5HN4 A; 4HCX A; 1XAA A; 2E5M A; 3R8W A; 1PS7 A; 4P69 C; 3TY4 A; 3BLX A; 3BLX B; 3WZW A; 3BLV B; 4AJA A; 1DPZ A; 1IDC A; 2AYQ A; 5LGE A; 1IDF A; 1OSJ A; 1R8K A; 5DE1 A; 3VL4 A; 4UMY A; 5GRH A; 5GRH B; 1V53 A; 1PB3 A; 3LXY A; 2UXR A; 5HN5 A; 1ZOR A; 1GC9 A; 1V94 A; 3TNG A; 1ISO A; 4IWH A; 1GC8 A; 2G4O A; 3MAP A; 5GRI B; 4I3K A; 3WZV A; 5I95 A; 1XGV A; 3FLK A; 5HN6 A; 1PB1 A; 4ICD A; #chains in the Genus database with same CATH homology 4L03 A; 5GRL B; 1IPD A; 5ICD A; 3BLV A; 2UXQ A; 1W0D A; 1GRP A; 1LWD A; 1T09 A; 1P8F A; 1U7N A; 2DHT A; 1CM7 A; 3AH3 A; 2Y42 A; 4Y1P A; 3MAS A; 3MAS B; 1SJS A; 3VMJ A; 1YXO A; 1XAD A; 1OSI A; 1V5B A; 2E0C A; 5K11 A; 4AJR A; 2HI1 A; 5J32 A; 4L06 A; 4AOV A; 1PS6 A; 3ICD A; 1CW4 A; 4I3L A; 6ICD A; 1WPW A; 1YCO A; 2IV0 A; 5J34 A; 2QFY A; 3WZY A; 3DMS A; 1XKD A; 3U9E A; 5GRI A; 2Y41 A; 4L04 A; 1DR0 A; 2Y40 A; 1CW1 A; 3MAR A; 7ICD A; 5GRF B; 4AJC A; 3VL7 A; 2D4V A; 2QFV A; 2D1C A; 3VL2 A; 1IDM A; 3INM A; 3ASJ A; 4YB4 A; 1TYO A; 5GRL A; 2ZTW A; 1X0L A; 1IDD A; 4JA8 A; 1HQS A; 1BL5 A; 2Y3Z A; 9ICD A; 3TSN A; 3VML A; 3UF6 A; 1AI2 A; 4XRX A; 4XXV A; 1HJ6 A; 4XS3 A; 3FMX X; 4KZO A; 1IDE A; 1G2U A; 3VMK A; 4AJB A; 3LCB C; 4WUO A; 8ICD A; 3VL3 A; 1CNZ A; 3TY3 A; 1VI1 A; 5J33 A; 3VKZ A; 5K10 A; 1IKA A; 5GRF A; 1WAL A; 5HN3 A; 1T0L A; 3UDO A; 1DR8 A; 3U1H A; 1HEX A; 5L57 A; 4AOU A; 4JQP A; 1AI3 A; 3UDU A; 4AJS A; 1A05 A; 3US8 A; 4ATY A; 2QFX A; 3VL6 A; 4BNP A; 1VLC A; 4F7I A; 5GRE A; 1CW7 A; 5GRE B; 5I96 A; 1XAC A; 4UMX A; 3WZX A; 1XAB A; 1GRO A; 4AJ3 A; 4AOY A; 1PTM A; 2QFW A; 5L58 A; 5HN4 A; 4HCX A; 1XAA A; 2E5M A; 3R8W A; 1PS7 A; 4P69 C; 3TY4 A; 3BLX A; 3BLX B; 3WZW A; 3BLV B; 4AJA A; 1DPZ A; 1IDC A; 2AYQ A; 5LGE A; 1IDF A; 1OSJ A; 1R8K A; 5DE1 A; 3VL4 A; 4UMY A; 5GRH A; 5GRH B; 1V53 A; 1PB3 A; 3LXY A; 2UXR A; 5HN5 A; 1ZOR A; 1GC9 A; 1V94 A; 3TNG A; 1ISO A; 4IWH A; 1GC8 A; 2G4O A; 3MAP A; 5GRI B; 4I3K A; 3WZV A; 5I95 A; 1XGV A; 3FLK A; 5HN6 A; 1PB1 A; 4ICD A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
