1PZ4A

The structural determination of an insect (mosquito) sterol carrier protein-2 with a ligand bound c16 fatty acid at 1.35 a resolution
Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
113
structure length
113
Chain Sequence
GIRMSLKSDEVFAKIAKRLESIDPANRQVEHVYKFRITQGGKVVKNWVMDLKNVKLVESDDAAEATLTMEDDIMFAIGTGALPAKEAMAQDKMEVDGQVELIFLLEPFIASLK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (4-17)S2 (39-47)TI1 (20-23)EMPTYTI2 (48-51)S1 (29-36)TIV3 (47-50)AH4 (96-101)TVIII2 (60-63)AH2 (68-76)S5 (90-94)TVIII3 (77-80)AH3 (81-87)3H1 (103-108)TIV2 (35-38)S4 (62-67)S3 (52-55)Updating...
connected with : NaN
publication title The Structural Determination of an Insect Sterol Carrier Protein-2 with a Ligand-bound C16 Fatty Acid at 1.35A Resolution
pubmed doi rcsb
molecule tags Lipid binding protein
source organism Aedes aegypti
molecule keywords sterol carrier protein 2
total genus 34
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2003-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02036 SCP2 SCP-2 sterol transfer family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.10 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A SCP2 sterol-binding domain 1pz4A00
4JGXA 4AV7A 2NBNA 1WFRA 3UY5A 4NURA 2CG2A 4MY0A 3R1KA 4JD6A 2OZGA 5EBVA 3N7ZA 2CFUA 3CNUA 3BKSA 5AIJA 2YHEA 2KSHA 2CFZA 1QNDA 2HV2A 5EC4A 2QZTA 4AXHA 4UEIA 3RYOA 2KSIA 3BDQA 2CG3A 3SXOA 3SXNA 1PZ4A 2NBMA 1C44A 3BKRA 4PDXA 4MY3A 4QB9A 2C0LB 2CX7A 5IV0A 2I00A 3BN8A 1IKTA 5A23A 5AJLA
chains in the Genus database with same CATH superfamily
4JGXA 4AV7A 2NBNA 1WFRA 3UY5A 4NURA 2CG2A 4MY0A 3R1KA 4JD6A 2OZGA 5EBVA 3N7ZA 2CFUA 3CNUA 3SSMA 3BKSA 5AIJA 2YHEA 3SSNA 2KSHA 2CFZA 1QNDA 2NSFA 2HV2A 5EC4A 2QZTA 4AXHA 4UEIA 3RYOA 4ZY7A 2KSIA 3BDQA 2CG3A 3SXOA 3SXNA 1PZ4A 2NBMA 1C44A 3BKRA 4PDXA 2NSGA 4MY3A 4QB9A 2C0LB 4NSSA 2CX7A 5IV0A 2I00A 3BN8A 1IKTA 5A23A 5AJLA 3SSOA
chains in the Genus database with same CATH topology
4JGXA 4AV7A 2NBNA 1WFRA 3UY5A 4NURA 2CG2A 4MY0A 3R1KA 4JD6A 2OZGA 5EBVA 3N7ZA 2CFUA 3CNUA 3BKSA 5AIJA 2YHEA 2KSHA 2CFZA 1QNDA 2HV2A 5EC4A 2QZTA 4AXHA 4UEIA 3RYOA 2KSIA 3BDQA 2CG3A 3SXOA 3SXNA 1PZ4A 2NBMA 1C44A 3BKRA 4PDXA 4MY3A 4QB9A 2C0LB 2CX7A 5IV0A 2I00A 3BN8A 1IKTA 5A23A 5AJLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JGX A;  4AV7 A;  2NBN A;  1WFR A;  3UY5 A;  4NUR A;  2CG2 A;  4MY0 A;  3R1K A;  4JD6 A;  2OZG A;  5EBV A;  3N7Z A;  2CFU A;  3CNU A;  3BKS A;  5AIJ A;  2YHE A;  2KSH A;  2CFZ A;  1QND A;  2HV2 A;  5EC4 A;  2QZT A;  4AXH A;  4UEI A;  3RYO A;  2KSI A;  3BDQ A;  2CG3 A;  3SXO A;  3SXN A;  1PZ4 A;  2NBM A;  1C44 A;  3BKR A;  4PDX A;  4MY3 A;  4QB9 A;  2C0L B;  2CX7 A;  5IV0 A;  2I00 A;  3BN8 A;  1IKT A;  5A23 A;  5AJL A; 
#chains in the Genus database with same CATH topology
 4JGX A;  4AV7 A;  2NBN A;  1WFR A;  3UY5 A;  4NUR A;  2CG2 A;  4MY0 A;  3R1K A;  4JD6 A;  2OZG A;  5EBV A;  3N7Z A;  2CFU A;  3CNU A;  3SSM A;  3BKS A;  5AIJ A;  2YHE A;  3SSN A;  2KSH A;  2CFZ A;  1QND A;  2NSF A;  2HV2 A;  5EC4 A;  2QZT A;  4AXH A;  4UEI A;  3RYO A;  4ZY7 A;  2KSI A;  3BDQ A;  2CG3 A;  3SXO A;  3SXN A;  1PZ4 A;  2NBM A;  1C44 A;  3BKR A;  4PDX A;  2NSG A;  4MY3 A;  4QB9 A;  2C0L B;  4NSS A;  2CX7 A;  5IV0 A;  2I00 A;  3BN8 A;  1IKT A;  5A23 A;  5AJL A;  3SSO A; 
#chains in the Genus database with same CATH homology
 4JGX A;  4AV7 A;  2NBN A;  1WFR A;  3UY5 A;  4NUR A;  2CG2 A;  4MY0 A;  3R1K A;  4JD6 A;  2OZG A;  5EBV A;  3N7Z A;  2CFU A;  3CNU A;  3BKS A;  5AIJ A;  2YHE A;  2KSH A;  2CFZ A;  1QND A;  2HV2 A;  5EC4 A;  2QZT A;  4AXH A;  4UEI A;  3RYO A;  2KSI A;  3BDQ A;  2CG3 A;  3SXO A;  3SXN A;  1PZ4 A;  2NBM A;  1C44 A;  3BKR A;  4PDX A;  4MY3 A;  4QB9 A;  2C0L B;  2CX7 A;  5IV0 A;  2I00 A;  3BN8 A;  1IKT A;  5A23 A;  5AJL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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