1RBO | Genus

Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	123
structure length	123
Chain Sequence	MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKPAGY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 123 atoms

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123 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	A common structural basis for the inhibition of ribulose 1,5-bisphosphate carboxylase by 4-carboxyarabinitol 1,5-bisphosphate and xylulose 1,5-bisphosphate. pubmed doi rcsb
molecule keywords	RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
molecule tags	Lyase
total genus	26
structure length	123
sequence length	123
chains with identical sequence	F, I, S
ec nomenclature	ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date	1996-10-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF00101	RuBisCO_small	Ribulose bisphosphate carboxylase, small chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.190.10	Alpha Beta	2-Layer Sandwich	Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase	Ribulose bisphosphate carboxylase, small subunit	1rboC00

1RLDS 1UW9C 1AUSS 1BXNI 3AXMS 4RUBS 1BWVS 1AA1C 4F0MB 1RLCS 1SVDM 1WDDS 1RCOC 1UZDC 1EJ7S 2VDHI 1IWAB 4HHHS 1UWAC 1RBOC 3ZXWB 3RUBS 1UZHC 2VDII 2YBVB 1RBLI 2V6AI 3AXKS 4F0HB 1UPPI 4MKVS 1IR21 2V68I 2V69I 4F0KB 8RUCI 1UPMC 1IR1S 2V67I 1RXOC 1RCXC 2V63I 1GK8I 1RSCI
chains in the Genus database with same CATH superfamily

1UW9C 1U63A 1AUSS 1BXNI 3AXMS 4RUBS 4DFCB 1BWVS 4LQ4A 1RSCI 1MZPA 1AD2A 1AA1C 3FPNA 1RLCS 2DFXI 5DM60 4F0MB 1SVDM 5DM70 1WDDS 1CJSA 1RCOC 1UZDC 1EJ7S 3QOYA 2HW8A 2VDHI 1IWAB 3ZQJA 4QG3A 3UMYA 3TG8A 4HHHS 3U56A 1DWUA 1UWAC 1RBOC 1ZHOA 3ZXWB 4QGBA 1I2AA 3RUBS 1UZHC 2VDII 2YBVB 4QVIA 1RBLI 2V6AI 3AXKS 4F0HB 1UPPI 4MKVS 4REOA 1IR21 2V68I 2V69I 4F0KB 8RUCI 1UPMC 1IR1S 2V67I 1RXOC 3U4MA 1RCXC 4F9TA 2V63I 1GK8I 1RLDS 2FHZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1RLD S;  1UW9 C;  1AUS S;  1BXN I;  3AXM S;  4RUB S;  1BWV S;  1AA1 C;  4F0M B;  1RLC S;  1SVD M;  1WDD S;  1RCO C;  1UZD C;  1EJ7 S;  2VDH I;  1IWA B;  4HHH S;  1UWA C;  1RBO C;  3ZXW B;  3RUB S;  1UZH C;  2VDI I;  2YBV B;  1RBL I;  2V6A I;  3AXK S;  4F0H B;  1UPP I;  4MKV S;  1IR2 1;  2V68 I;  2V69 I;  4F0K B;  8RUC I;  1UPM C;  1IR1 S;  2V67 I;  1RXO C;  1RCX C;  2V63 I;  1GK8 I;  1RSC I; 
#chains in the Genus database with same CATH topology
 1UW9 C;  1U63 A;  1AUS S;  1BXN I;  3AXM S;  4RUB S;  4DFC B;  1BWV S;  4LQ4 A;  1RSC I;  1MZP A;  1AD2 A;  1AA1 C;  3FPN A;  1RLC S;  2DFX I;  5DM6 0;  4F0M B;  1SVD M;  5DM7 0;  1WDD S;  1CJS A;  1RCO C;  1UZD C;  1EJ7 S;  3QOY A;  2HW8 A;  2VDH I;  1IWA B;  3ZQJ A;  4QG3 A;  3UMY A;  3TG8 A;  4HHH S;  3U56 A;  1DWU A;  1UWA C;  1RBO C;  1ZHO A;  3ZXW B;  4QGB A;  1I2A A;  3RUB S;  1UZH C;  2VDI I;  2YBV B;  4QVI A;  1RBL I;  2V6A I;  3AXK S;  4F0H B;  1UPP I;  4MKV S;  4REO A;  1IR2 1;  2V68 I;  2V69 I;  4F0K B;  8RUC I;  1UPM C;  1IR1 S;  2V67 I;  1RXO C;  3U4M A;  1RCX C;  4F9T A;  2V63 I;  1GK8 I;  1RLD S;  2FHZ A; 
#chains in the Genus database with same CATH homology
 1RLD S;  1UW9 C;  1AUS S;  1BXN I;  3AXM S;  4RUB S;  1BWV S;  1AA1 C;  4F0M B;  1RLC S;  1SVD M;  1WDD S;  1RCO C;  1UZD C;  1EJ7 S;  2VDH I;  1IWA B;  4HHH S;  1UWA C;  1RBO C;  3ZXW B;  3RUB S;  1UZH C;  2VDI I;  2YBV B;  1RBL I;  2V6A I;  3AXK S;  4F0H B;  1UPP I;  4MKV S;  1IR2 1;  2V68 I;  2V69 I;  4F0K B;  8RUC I;  1UPM C;  1IR1 S;  2V67 I;  1RXO C;  1RCX C;  2V63 I;  1GK8 I;  1RSC I;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1RBOC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations