1RCX | Genus

Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	123
structure length	123
Chain Sequence	MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKPAGY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 123 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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123 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The structure of the complex between rubisco and its natural substrate ribulose 1,5-bisphosphate. pubmed doi rcsb
molecule keywords	RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
molecule tags	Lyase (carbon-carbon)
total genus	26
structure length	123
sequence length	123
chains with identical sequence	F, I, M, P, S, T, W
ec nomenclature	ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date	1996-12-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF00101	RuBisCO_small	Ribulose bisphosphate carboxylase, small chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.190.10	Alpha Beta	2-Layer Sandwich	Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase	Ribulose bisphosphate carboxylase, small subunit	1rcxC00

4HHHS 1RCOC 1IR21 1EJ7S 1RLCS 1SVDM 4F0KB 1RCXC 1BXNI 1WDDS 1BWVS 1UZDC 1RBLI 2VDHI 2V69I 4F0MB 2VDII 1IWAB 4MKVS 1UWAC 3ZXWB 2V63I 1RSCI 1RBOC 3RUBS 8RUCI 3AXMS 1UZHC 2V68I 1RXOC 1UPMC 3AXKS 1RLDS 4F0HB 1GK8I 4RUBS 1UPPI 1IR1S 1AUSS 1AA1C 2V6AI 2YBVB 2V67I 1UW9C
chains in the Genus database with same CATH superfamily

4F9TA 4HHHS 4LQ4A 3U4MA 3UMYA 1RCOC 1IR21 3TG8A 1EJ7S 1ZHOA 1DWUA 1RLCS 1SVDM 4F0KB 5DM70 4QG3A 2DFXI 1RCXC 4DFCB 1BXNI 1CJSA 4QVIA 1WDDS 3FPNA 1I2AA 1BWVS 1UZDC 1RBLI 2HW8A 2VDHI 4QGBA 2FHZA 1MZPA 2V69I 4F0MB 2VDII 1IWAB 4MKVS 1UWAC 3ZXWB 3U56A 2V63I 1RSCI 1RBOC 3RUBS 8RUCI 3AXMS 1UZHC 2V68I 1RXOC 1AD2A 1UPMC 3AXKS 1RLDS 4F0HB 3ZQJA 4REOA 1GK8I 4RUBS 1UPPI 1U63A 1IR1S 1AUSS 1AA1C 2V6AI 2YBVB 5DM60 3QOYA 2V67I 1UW9C
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4HHH S;  1RCO C;  1IR2 1;  1EJ7 S;  1RLC S;  1SVD M;  4F0K B;  1RCX C;  1BXN I;  1WDD S;  1BWV S;  1UZD C;  1RBL I;  2VDH I;  2V69 I;  4F0M B;  2VDI I;  1IWA B;  4MKV S;  1UWA C;  3ZXW B;  2V63 I;  1RSC I;  1RBO C;  3RUB S;  8RUC I;  3AXM S;  1UZH C;  2V68 I;  1RXO C;  1UPM C;  3AXK S;  1RLD S;  4F0H B;  1GK8 I;  4RUB S;  1UPP I;  1IR1 S;  1AUS S;  1AA1 C;  2V6A I;  2YBV B;  2V67 I;  1UW9 C; 
#chains in the Genus database with same CATH topology
 4F9T A;  4HHH S;  4LQ4 A;  3U4M A;  3UMY A;  1RCO C;  1IR2 1;  3TG8 A;  1EJ7 S;  1ZHO A;  1DWU A;  1RLC S;  1SVD M;  4F0K B;  5DM7 0;  4QG3 A;  2DFX I;  1RCX C;  4DFC B;  1BXN I;  1CJS A;  4QVI A;  1WDD S;  3FPN A;  1I2A A;  1BWV S;  1UZD C;  1RBL I;  2HW8 A;  2VDH I;  4QGB A;  2FHZ A;  1MZP A;  2V69 I;  4F0M B;  2VDI I;  1IWA B;  4MKV S;  1UWA C;  3ZXW B;  3U56 A;  2V63 I;  1RSC I;  1RBO C;  3RUB S;  8RUC I;  3AXM S;  1UZH C;  2V68 I;  1RXO C;  1AD2 A;  1UPM C;  3AXK S;  1RLD S;  4F0H B;  3ZQJ A;  4REO A;  1GK8 I;  4RUB S;  1UPP I;  1U63 A;  1IR1 S;  1AUS S;  1AA1 C;  2V6A I;  2YBV B;  5DM6 0;  3QOY A;  2V67 I;  1UW9 C; 
#chains in the Genus database with same CATH homology
 4HHH S;  1RCO C;  1IR2 1;  1EJ7 S;  1RLC S;  1SVD M;  4F0K B;  1RCX C;  1BXN I;  1WDD S;  1BWV S;  1UZD C;  1RBL I;  2VDH I;  2V69 I;  4F0M B;  2VDI I;  1IWA B;  4MKV S;  1UWA C;  3ZXW B;  2V63 I;  1RSC I;  1RBO C;  3RUB S;  8RUC I;  3AXM S;  1UZH C;  2V68 I;  1RXO C;  1UPM C;  3AXK S;  1RLD S;  4F0H B;  1GK8 I;  4RUB S;  1UPP I;  1IR1 S;  1AUS S;  1AA1 C;  2V6A I;  2YBV B;  2V67 I;  1UW9 C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1RCXC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations