The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
54
|
sequence length |
164
|
structure length |
164
|
Chain Sequence |
EEPRLDIEGFVVDYFTHRIRQNGMEWFGAPGLPCGVQPEHEMMRVMGTIFEKKHAENFETFCEQLLAVPRISFSPYQDVVRTVGNAQTDQCPMSYGRLIGLISFGGFVAAKMMESVELQGQVRNLFVYTSLFIKTRIRNNWKEHNRSWDDFMTLGKQMKEDYER
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural, Biochemical, and Functional Analyses of CED-9 Recognition by the Proapoptotic Proteins EGL-1 and CED-4
pubmed doi rcsb |
| molecule keywords |
Apoptosis regulator ced-9
|
| molecule tags |
Apoptosis
|
| source organism |
Caenorhabditis elegans
|
| total genus |
54
|
| structure length |
164
|
| sequence length |
164
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2004-07-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00452 | Bcl-2 | Apoptosis regulator proteins, Bcl-2 family |
| A | PF02180 | BH4 | Bcl-2 homology region 4 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Apoptosis Regulator Bcl-x | Blc2-like |
#chains in the Genus database with same CATH superfamily 3PK1 A; 1O0L A; 3ILC A; 2KBW A; 4HW2 A; 1R2H A; 3WIY A; 1BXL A; 4U2U A; 1WSX A; 4S0O A; 2VOH A; 4ZIG A; 4BPI A; 1G5J A; 2NLA A; 4ZII A; 5C6H A; 4BD8 A; 2K7W A; 1ZY3 A; 2NL9 A; 4OQ6 A; 2KUA A; 1R2I A; 3BL2 A; 3KJ1 A; 4QNQ A; 2XA0 A; 4OQ5 A; 2WH6 A; 2JCN A; 4ZIF A; 1R2E A; 2ROD A; 4U2V A; 5IF4 A; 2JM6 B; 1DDB A; 1GJH A; 4BDU A; 1LXL A; 3KJ0 A; 4K5B C; 1MAZ A; 2VOF A; 2ROC A; 1OHU A; 2O22 A; 4G35 A; 1MK3 A; 2IMS A; 4BD2 A; 1PQ1 A; 3D7V A; 3IHC A; 5FDR A; 5IEZ A; 2M5B A; 4BD7 A; 3MQP A; 4HW3 A; 2IMT A; 3IIG A; 2O2N A; 5FDO A; 4ZIE A; 3WIX A; 2PQK A; 3I1H A; 2VOI A; 4MI8 A; 4B4S A; 3CVA X; 4YK9 A; 4BD6 A; 3IO9 A; 3KJ2 A; 3QBR A; 3IIH A; 1YSW A; 2YV6 A; 3IHE A; 1YSN A; 5JSB A; 4ZIH A; 4S0P A; 3DVU A; 4HW4 A; 3KZ0 A; 4ZBI A; 1R2G A; 5KU9 A; 2MEJ A; 2A5Y A; 2W3L A; 1F16 A; 1YSG A; 2ABO A; 2BZW A; 2MHS A; 4ZEQ A; 2VM6 A; 4QVX A; 2O2M A; 3IHD A; 1K3K A; 2V6Q A; 1R2D A; 1Q59 A; 1G5M A; 4OYD A; 5KTG A; 5FMI A; 1AF3 A; 2BID A; 5FC4 A; 4ZBF A; 4YJ4 A; 2ME8 A; 1YSI A; 1TY4 A; 2LR1 A; 2XPX A; 4BPJ A; 2B48 A; 3MK8 A; 2VOG A; 1PQ0 A; 5C3F A; 2O21 A; 4WMR A; 2O2F A; #chains in the Genus database with same CATH topology 3PK1 A; 1O0L A; 3ILC A; 2KBW A; 4HW2 A; 1R2H A; 3WIY A; 4UF1 A; 1BXL A; 4U2U A; 1WSX A; 4S0O A; 2VOH A; 4ZIG A; 4BBC A; 4BPI A; 1G5J A; 2NLA A; 4ZII A; 2I39 A; 5C6H A; 4D2M A; 4BD8 A; 2VVY A; 2K7W A; 1ZY3 A; 2NL9 A; 2UXE A; 2KUA A; 4OQ6 A; 1R2I A; 3BL2 A; 3KJ1 A; 4M0S A; 4QNQ A; 2XA0 A; 4OQ5 A; 2WH6 A; 2JCN A; 4ZIF A; 4UF3 A; 1R2E A; 2ROD A; 4U2V A; 5IF4 A; 2JM6 B; 1DDB A; 1GJH A; 4BDU A; 1LXL A; 3KJ0 A; 4K5B C; 1MAZ A; 2VOF A; 3JRV A; 2ROC A; 1OHU A; 2O22 A; 4G35 A; 1MK3 A; 2IMS A; 4BD2 A; 1PQ1 A; 3D7V A; 3IHC A; 5FDR A; 5IEZ A; 2M5B A; 4BD7 A; 3MQP A; 4LQK A; 4HW3 A; 2IMT A; 2K36 A; 2O2N A; 3IIG A; 5FDO A; 4ZIE A; 3WIX A; 2PQK A; 3I1H A; 2VOI A; 2O42 A; 4MI8 A; 4B4S A; 4D2L A; 3CVA X; 4YK9 A; 4BD6 A; 3IO9 A; 4BBB A; 3KJ2 A; 3QBR A; 3IIH A; 1YSW A; 2YV6 A; 3IHE A; 1YSN A; 5JSB A; 4ZIH A; 2JBY A; 4S0P A; 3DVU A; 4HW4 A; 3KZ0 A; 4ZBI A; 1R2G A; 5KU9 A; 2MEJ A; 2A5Y A; 2W3L A; 1F16 A; 1YSG A; 2ABO A; 2BZW A; 2MHS A; 4ZEQ A; 2VM6 A; 4QVX A; 2O2M A; 2VVW A; 3IHD A; 1K3K A; 2V6Q A; 2VVX A; 1R2D A; 1Q59 A; 1G5M A; 4OYD A; 5KTG A; 5FMI A; 1AF3 A; 2VTY A; 2BID A; 5FC4 A; 4ZBF A; 4YJ4 A; 2ME8 A; 1YSI A; 1TY4 A; 2LR1 A; 2XPX A; 4BPJ A; 4UF2 A; 2B48 A; 3MK8 A; 2VOG A; 1PQ0 A; 2JBX A; 5C3F A; 2O21 A; 4BBD A; 4WMR A; 2O2F A; #chains in the Genus database with same CATH homology 3PK1 A; 1O0L A; 3ILC A; 2KBW A; 4HW2 A; 1R2H A; 3WIY A; 1BXL A; 4U2U A; 1WSX A; 4S0O A; 2VOH A; 4ZIG A; 4BPI A; 1G5J A; 2NLA A; 4ZII A; 5C6H A; 4BD8 A; 2K7W A; 1ZY3 A; 2NL9 A; 4OQ6 A; 2KUA A; 1R2I A; 3BL2 A; 3KJ1 A; 4QNQ A; 2XA0 A; 4OQ5 A; 2WH6 A; 2JCN A; 4ZIF A; 1R2E A; 2ROD A; 4U2V A; 5IF4 A; 2JM6 B; 1DDB A; 1GJH A; 4BDU A; 1LXL A; 3KJ0 A; 4K5B C; 1MAZ A; 2VOF A; 2ROC A; 1OHU A; 2O22 A; 4G35 A; 1MK3 A; 2IMS A; 4BD2 A; 1PQ1 A; 3D7V A; 3IHC A; 5FDR A; 5IEZ A; 2M5B A; 4BD7 A; 3MQP A; 4HW3 A; 2IMT A; 3IIG A; 2O2N A; 5FDO A; 4ZIE A; 3WIX A; 2PQK A; 3I1H A; 2VOI A; 4MI8 A; 4B4S A; 3CVA X; 4YK9 A; 4BD6 A; 3IO9 A; 3KJ2 A; 3QBR A; 3IIH A; 1YSW A; 2YV6 A; 3IHE A; 1YSN A; 5JSB A; 4ZIH A; 4S0P A; 3DVU A; 4HW4 A; 3KZ0 A; 4ZBI A; 1R2G A; 5KU9 A; 2MEJ A; 2A5Y A; 2W3L A; 1F16 A; 1YSG A; 2ABO A; 2BZW A; 2MHS A; 4ZEQ A; 2VM6 A; 4QVX A; 2O2M A; 3IHD A; 1K3K A; 2V6Q A; 1R2D A; 1Q59 A; 1G5M A; 4OYD A; 5KTG A; 5FMI A; 1AF3 A; 2BID A; 5FC4 A; 4ZBF A; 4YJ4 A; 2ME8 A; 1YSI A; 1TY4 A; 2LR1 A; 2XPX A; 4BPJ A; 2B48 A; 3MK8 A; 2VOG A; 1PQ0 A; 5C3F A; 2O21 A; 4WMR A; 2O2F A;
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