1V66A

Solution structure of human p53 binding domain of pias-1
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
65
structure length
65
Chain Sequence
MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title NMR structure of the N-terminal domain of SUMO ligase PIAS1 and its interaction with tumor suppressor p53 and A/T-rich DNA oligomers
pubmed doi rcsb
molecule tags Ligase
source organism Homo sapiens
molecule keywords Protein inhibitor of activated STAT protein 1
total genus 20
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 2003-11-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.30 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 SAP domain 1v66A00
1H1JS 1JEQA 2JVWA 2RNOA 4BITA 2KW9A 2RNNA 1V66A 2KVDA 2WQGA 1ZBHA 1JJRA 2KVUA 2KVEA 4UZWA
chains in the Genus database with same CATH superfamily
2MPHA 3L0OA 1JJRA 1A63A 2LD7A 5CIUA 1JEIA 3LLRA 2LC3A 1A8VA 2DK4A 2QNFA 2HJQA 1H9EA 1EN7A 2A8VA 1ZS9A 2ODCI 3QKJA 1YNSA 2G80A 1JEQA 2JVWA 2RNOA 3FLGA 1GL9B 2RNNA 1V66A 2KVDA 4BITA 2KVUA 2KVEA 4UZWA 1H1JS 1GJJA 1GKUB 1H9FA 1E7DA 1E7LA 2KW9A 2W51A 1KHCA 2KFVA 2WQGA 1ZBHA 1Y02A 2ODGC 1A62A 2QNCA
chains in the Genus database with same CATH topology
1H1JS 1JEQA 2JVWA 2RNOA 4BITA 2KW9A 2RNNA 1V66A 2KVDA 2WQGA 1ZBHA 1JJRA 2KVUA 2KVEA 4UZWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H1J S;  1JEQ A;  2JVW A;  2RNO A;  4BIT A;  2KW9 A;  2RNN A;  1V66 A;  2KVD A;  2WQG A;  1ZBH A;  1JJR A;  2KVU A;  2KVE A;  4UZW A; 
#chains in the Genus database with same CATH topology
 2MPH A;  3L0O A;  1JJR A;  1A63 A;  2LD7 A;  5CIU A;  1JEI A;  3LLR A;  2LC3 A;  1A8V A;  2DK4 A;  2QNF A;  2HJQ A;  1H9E A;  1EN7 A;  2A8V A;  1ZS9 A;  2ODC I;  3QKJ A;  1YNS A;  2G80 A;  1JEQ A;  2JVW A;  2RNO A;  3FLG A;  1GL9 B;  2RNN A;  1V66 A;  2KVD A;  4BIT A;  2KVU A;  2KVE A;  4UZW A;  1H1J S;  1GJJ A;  1GKU B;  1H9F A;  1E7D A;  1E7L A;  2KW9 A;  2W51 A;  1KHC A;  2KFV A;  2WQG A;  1ZBH A;  1Y02 A;  2ODG C;  1A62 A;  2QNC A; 
#chains in the Genus database with same CATH homology
 1H1J S;  1JEQ A;  2JVW A;  2RNO A;  4BIT A;  2KW9 A;  2RNN A;  1V66 A;  2KVD A;  2WQG A;  1ZBH A;  1JJR A;  2KVU A;  2KVE A;  4UZW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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