1XAAA

3-isopropylmalate dehydrogenase, low temperature (100k) structure
Total Genus 118

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
345
structure length
345
Chain Sequence
MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPPDLGGSAGTEAFTATVLRHLA
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (35-38)AH3 (55-63)S1 (2-8)AH1 (11-30)TII3 (279-282)TIV1 (51-54)3H1 (75-77)TI1 (77-80)AH4 (86-97)S4 (99-108)TII1 (109-112)3H3 (113-115)3H8 (325-327)AH5 (120-123)TII2 (123-126)S5 (126-133)AH9 (237-250)TIV2 (141-144)S6 (145-146)S7 (151-152)TI2 (147-150)AH6 (159-175)AH7 (190-204)TIV4 (204-207)TI4 (206-209)AH11 (305-321)S9 (210-215)S8 (179-184)TI3 (185-188)AH8 (216-225)TIV3 (186-189)3H7 (277-279)AH10 (287-302)AH2 (43-49)S12 (268-271)S3 (66-71)3H2 (82-84)3H4 (138-140)3H5 (227-229)3H6 (254-256)S11 (258-263)O1 (303-305)AH12 (333-344)S10 (232-235)Updating...
connected with : NaN
molecule tags Oxidoreductase
publication title Cryocrystallography of 3-Isopropylmalate dehydrogenase from Thermus thermophilus and its chimeric enzyme.
pubmed doi rcsb
molecule keywords 3-ISOPROPYLMALATE DEHYDROGENASE
total genus 118
structure length 345
sequence length 345
ec nomenclature ec 1.1.1.85: 3-isopropylmalate dehydrogenase.
pdb deposition date 1995-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 1xaaA00
4AJ3A 5L58A 5GRHB 1YCOA 1IDMA 1V94A 1XGVA 4L03A 1CW1A 4I3KA 3TNGA 1PB1A 4BNPA 1CM7A 1U7NA 3VMKA 1AI3A 1XABA 2QFYA 2ZTWA 1T0LA 4L06A 1GRPA 1CW4A 3VL3A 3MASB 3US8A 1LWDA 1R8KA 3VL7A 3VL6A 5K10A 2AYQA 5GREB 3VMJA 3VL2A 5HN5A 3U9EA 4AJBA 4AJSA 4ATYA 4AJRA 8ICDA 2E5MA 3WZYA 2UXQA 1IPDA 2D1CA 3INMA 1PS7A 2D4VA 3VMLA 5L57A 4HCXA 1ISOA 5K11A 2QFWA 7ICDA 1XADA 3WZVA 1GC9A 4AOUA 4I3LA 4F7IA 5GRLA 1HJ6A 1XKDA 1DR8A 1PB3A 1VI1A 3LXYA 2Y41A 5DE1A 4Y1PA 5J33A 3BLXA 4P69C 4YB4A 3FMXX 2QFVA 1HQSA 4AOYA 9ICDA 1T09A 4L04A 1XAAA 4KZOA 5GRFA 4AOVA 2Y3ZA 1A05A 2DHTA 3UDUA 1GC8A 1ZORA 3ASJA 3ICDA 4JA8A 3VL4A 1PS6A 1DPZA 3BLVA 4XRXA 1IDEA 1V53A 1AI2A 4XXVA 1WPWA 2Y42A 3TY3A 3LCBC 1CNZA 4UMXA 2G4OA 3U1HA 1V5BA 1BL5A 2IV0A 3TSNA 2E0CA 1VLCA 5GRIA 3TY4A 5GRLB 1WALA 4JQPA 6ICDA 1PTMA 2Y40A 3MAPA 1X0LA 3AH3A 1G2UA 3WZWA 3BLXB 4AJCA 5I96A 1P8FA 3DMSA 1CW7A 1YXOA 3FLKA 5GRHA 1IDCA 1XACA 5GRFB 1OSJA 5HN4A 4ICDA 4AJAA 4XS3A 4IWHA 3R8WA 4UMYA 1GROA 1DR0A 3BLVB 5HN6A 1IDFA 1IDDA 1IKAA 1OSIA 2HI1A 3MARA 1HEXA 1SJSA 4WUOA 5HN3A 2QFXA 3UDOA 5J34A 5J32A 2UXRA 3MASA 3WZXA 1W0DA 5GRIB 5ICDA 5LGEA 5GREA 3VKZA 1TYOA 5I95A 3UF6A
chains in the Genus database with same CATH superfamily
4AJ3A 5L58A 5GRHB 1YCOA 1IDMA 1V94A 1XGVA 4L03A 1CW1A 4I3KA 3TNGA 1PB1A 4BNPA 1CM7A 1U7NA 3VMKA 1AI3A 1XABA 2QFYA 2ZTWA 1T0LA 4L06A 1GRPA 1CW4A 3VL3A 3MASB 3US8A 1LWDA 1R8KA 3VL7A 3VL6A 5K10A 2AYQA 5GREB 3VMJA 3VL2A 5HN5A 3U9EA 4AJBA 4AJSA 4ATYA 4AJRA 8ICDA 2E5MA 3WZYA 2UXQA 1IPDA 2D1CA 3INMA 1PS7A 2D4VA 3VMLA 5L57A 4HCXA 1ISOA 5K11A 2QFWA 7ICDA 1XADA 3WZVA 1GC9A 4AOUA 4I3LA 4F7IA 5GRLA 1HJ6A 1XKDA 1DR8A 1PB3A 1VI1A 3LXYA 2Y41A 5DE1A 4Y1PA 5J33A 3BLXA 4P69C 4YB4A 3FMXX 2QFVA 1HQSA 4AOYA 9ICDA 1T09A 4L04A 1XAAA 4KZOA 5GRFA 4AOVA 2Y3ZA 1A05A 2DHTA 3UDUA 1GC8A 1ZORA 3ASJA 3ICDA 4JA8A 3VL4A 1PS6A 1DPZA 3BLVA 4XRXA 1IDEA 1V53A 1AI2A 4XXVA 1WPWA 2Y42A 3TY3A 3LCBC 1CNZA 4UMXA 2G4OA 3U1HA 1V5BA 1BL5A 2IV0A 3TSNA 2E0CA 1VLCA 5GRIA 3TY4A 5GRLB 1WALA 4JQPA 6ICDA 1PTMA 2Y40A 3MAPA 1X0LA 3AH3A 1G2UA 3WZWA 3BLXB 4AJCA 5I96A 1P8FA 3DMSA 1CW7A 1YXOA 3FLKA 5GRHA 1IDCA 1XACA 5GRFB 1OSJA 5HN4A 4ICDA 4AJAA 4XS3A 4IWHA 3R8WA 4UMYA 1GROA 1DR0A 3BLVB 5HN6A 1IDFA 1IDDA 1IKAA 1OSIA 2HI1A 3MARA 1HEXA 1SJSA 4WUOA 5HN3A 2QFXA 3UDOA 5J34A 5J32A 2UXRA 3MASA 3WZXA 1W0DA 5GRIB 5ICDA 5LGEA 5GREA 3VKZA 1TYOA 5I95A 3UF6A
chains in the Genus database with same CATH topology
4AJ3A 5L58A 5GRHB 1YCOA 1IDMA 1V94A 1XGVA 4L03A 1CW1A 4I3KA 3TNGA 1PB1A 4BNPA 1CM7A 1U7NA 3VMKA 1AI3A 1XABA 2QFYA 2ZTWA 1T0LA 4L06A 1GRPA 1CW4A 3VL3A 3MASB 3US8A 1LWDA 1R8KA 3VL7A 3VL6A 5K10A 2AYQA 5GREB 3VMJA 3VL2A 5HN5A 3U9EA 4AJBA 4AJSA 4ATYA 4AJRA 8ICDA 2E5MA 3WZYA 2UXQA 1IPDA 2D1CA 3INMA 1PS7A 2D4VA 3VMLA 5L57A 4HCXA 1ISOA 5K11A 2QFWA 7ICDA 1XADA 3WZVA 1GC9A 4AOUA 4I3LA 4F7IA 5GRLA 1HJ6A 1XKDA 1DR8A 1PB3A 1VI1A 3LXYA 2Y41A 5DE1A 4Y1PA 5J33A 3BLXA 4P69C 4YB4A 3FMXX 2QFVA 1HQSA 4AOYA 9ICDA 1T09A 4L04A 1XAAA 4KZOA 5GRFA 4AOVA 2Y3ZA 1A05A 2DHTA 3UDUA 1GC8A 1ZORA 3ASJA 3ICDA 4JA8A 3VL4A 1PS6A 1DPZA 3BLVA 4XRXA 1IDEA 1V53A 1AI2A 4XXVA 1WPWA 2Y42A 3TY3A 3LCBC 1CNZA 4UMXA 2G4OA 3U1HA 1V5BA 1BL5A 2IV0A 3TSNA 2E0CA 1VLCA 5GRIA 3TY4A 5GRLB 1WALA 4JQPA 6ICDA 1PTMA 2Y40A 3MAPA 1X0LA 3AH3A 1G2UA 3WZWA 3BLXB 4AJCA 5I96A 1P8FA 3DMSA 1CW7A 1YXOA 3FLKA 5GRHA 1IDCA 1XACA 5GRFB 1OSJA 5HN4A 4ICDA 4AJAA 4XS3A 4IWHA 3R8WA 4UMYA 1GROA 1DR0A 3BLVB 5HN6A 1IDFA 1IDDA 1IKAA 1OSIA 2HI1A 3MARA 1HEXA 1SJSA 4WUOA 5HN3A 2QFXA 3UDOA 5J34A 5J32A 2UXRA 3MASA 3WZXA 1W0DA 5GRIB 5ICDA 5LGEA 5GREA 3VKZA 1TYOA 5I95A 3UF6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AJ3 A;  5L58 A;  5GRH B;  1YCO A;  1IDM A;  1V94 A;  1XGV A;  4L03 A;  1CW1 A;  4I3K A;  3TNG A;  1PB1 A;  4BNP A;  1CM7 A;  1U7N A;  3VMK A;  1AI3 A;  1XAB A;  2QFY A;  2ZTW A;  1T0L A;  4L06 A;  1GRP A;  1CW4 A;  3VL3 A;  3MAS B;  3US8 A;  1LWD A;  1R8K A;  3VL7 A;  3VL6 A;  5K10 A;  2AYQ A;  5GRE B;  3VMJ A;  3VL2 A;  5HN5 A;  3U9E A;  4AJB A;  4AJS A;  4ATY A;  4AJR A;  8ICD A;  2E5M A;  3WZY A;  2UXQ A;  1IPD A;  2D1C A;  3INM A;  1PS7 A;  2D4V A;  3VML A;  5L57 A;  4HCX A;  1ISO A;  5K11 A;  2QFW A;  7ICD A;  1XAD A;  3WZV A;  1GC9 A;  4AOU A;  4I3L A;  4F7I A;  5GRL A;  1HJ6 A;  1XKD A;  1DR8 A;  1PB3 A;  1VI1 A;  3LXY A;  2Y41 A;  5DE1 A;  4Y1P A;  5J33 A;  3BLX A;  4P69 C;  4YB4 A;  3FMX X;  2QFV A;  1HQS A;  4AOY A;  9ICD A;  1T09 A;  4L04 A;  1XAA A;  4KZO A;  5GRF A;  4AOV A;  2Y3Z A;  1A05 A;  2DHT A;  3UDU A;  1GC8 A;  1ZOR A;  3ASJ A;  3ICD A;  4JA8 A;  3VL4 A;  1PS6 A;  1DPZ A;  3BLV A;  4XRX A;  1IDE A;  1V53 A;  1AI2 A;  4XXV A;  1WPW A;  2Y42 A;  3TY3 A;  3LCB C;  1CNZ A;  4UMX A;  2G4O A;  3U1H A;  1V5B A;  1BL5 A;  2IV0 A;  3TSN A;  2E0C A;  1VLC A;  5GRI A;  3TY4 A;  5GRL B;  1WAL A;  4JQP A;  6ICD A;  1PTM A;  2Y40 A;  3MAP A;  1X0L A;  3AH3 A;  1G2U A;  3WZW A;  3BLX B;  4AJC A;  5I96 A;  1P8F A;  3DMS A;  1CW7 A;  1YXO A;  3FLK A;  5GRH A;  1IDC A;  1XAC A;  5GRF B;  1OSJ A;  5HN4 A;  4ICD A;  4AJA A;  4XS3 A;  4IWH A;  3R8W A;  4UMY A;  1GRO A;  1DR0 A;  3BLV B;  5HN6 A;  1IDF A;  1IDD A;  1IKA A;  1OSI A;  2HI1 A;  3MAR A;  1HEX A;  1SJS A;  4WUO A;  5HN3 A;  2QFX A;  3UDO A;  5J34 A;  5J32 A;  2UXR A;  3MAS A;  3WZX A;  1W0D A;  5GRI B;  5ICD A;  5LGE A;  5GRE A;  3VKZ A;  1TYO A;  5I95 A;  3UF6 A; 
#chains in the Genus database with same CATH topology
 4AJ3 A;  5L58 A;  5GRH B;  1YCO A;  1IDM A;  1V94 A;  1XGV A;  4L03 A;  1CW1 A;  4I3K A;  3TNG A;  1PB1 A;  4BNP A;  1CM7 A;  1U7N A;  3VMK A;  1AI3 A;  1XAB A;  2QFY A;  2ZTW A;  1T0L A;  4L06 A;  1GRP A;  1CW4 A;  3VL3 A;  3MAS B;  3US8 A;  1LWD A;  1R8K A;  3VL7 A;  3VL6 A;  5K10 A;  2AYQ A;  5GRE B;  3VMJ A;  3VL2 A;  5HN5 A;  3U9E A;  4AJB A;  4AJS A;  4ATY A;  4AJR A;  8ICD A;  2E5M A;  3WZY A;  2UXQ A;  1IPD A;  2D1C A;  3INM A;  1PS7 A;  2D4V A;  3VML A;  5L57 A;  4HCX A;  1ISO A;  5K11 A;  2QFW A;  7ICD A;  1XAD A;  3WZV A;  1GC9 A;  4AOU A;  4I3L A;  4F7I A;  5GRL A;  1HJ6 A;  1XKD A;  1DR8 A;  1PB3 A;  1VI1 A;  3LXY A;  2Y41 A;  5DE1 A;  4Y1P A;  5J33 A;  3BLX A;  4P69 C;  4YB4 A;  3FMX X;  2QFV A;  1HQS A;  4AOY A;  9ICD A;  1T09 A;  4L04 A;  1XAA A;  4KZO A;  5GRF A;  4AOV A;  2Y3Z A;  1A05 A;  2DHT A;  3UDU A;  1GC8 A;  1ZOR A;  3ASJ A;  3ICD A;  4JA8 A;  3VL4 A;  1PS6 A;  1DPZ A;  3BLV A;  4XRX A;  1IDE A;  1V53 A;  1AI2 A;  4XXV A;  1WPW A;  2Y42 A;  3TY3 A;  3LCB C;  1CNZ A;  4UMX A;  2G4O A;  3U1H A;  1V5B A;  1BL5 A;  2IV0 A;  3TSN A;  2E0C A;  1VLC A;  5GRI A;  3TY4 A;  5GRL B;  1WAL A;  4JQP A;  6ICD A;  1PTM A;  2Y40 A;  3MAP A;  1X0L A;  3AH3 A;  1G2U A;  3WZW A;  3BLX B;  4AJC A;  5I96 A;  1P8F A;  3DMS A;  1CW7 A;  1YXO A;  3FLK A;  5GRH A;  1IDC A;  1XAC A;  5GRF B;  1OSJ A;  5HN4 A;  4ICD A;  4AJA A;  4XS3 A;  4IWH A;  3R8W A;  4UMY A;  1GRO A;  1DR0 A;  3BLV B;  5HN6 A;  1IDF A;  1IDD A;  1IKA A;  1OSI A;  2HI1 A;  3MAR A;  1HEX A;  1SJS A;  4WUO A;  5HN3 A;  2QFX A;  3UDO A;  5J34 A;  5J32 A;  2UXR A;  3MAS A;  3WZX A;  1W0D A;  5GRI B;  5ICD A;  5LGE A;  5GRE A;  3VKZ A;  1TYO A;  5I95 A;  3UF6 A; 
#chains in the Genus database with same CATH homology
 4AJ3 A;  5L58 A;  5GRH B;  1YCO A;  1IDM A;  1V94 A;  1XGV A;  4L03 A;  1CW1 A;  4I3K A;  3TNG A;  1PB1 A;  4BNP A;  1CM7 A;  1U7N A;  3VMK A;  1AI3 A;  1XAB A;  2QFY A;  2ZTW A;  1T0L A;  4L06 A;  1GRP A;  1CW4 A;  3VL3 A;  3MAS B;  3US8 A;  1LWD A;  1R8K A;  3VL7 A;  3VL6 A;  5K10 A;  2AYQ A;  5GRE B;  3VMJ A;  3VL2 A;  5HN5 A;  3U9E A;  4AJB A;  4AJS A;  4ATY A;  4AJR A;  8ICD A;  2E5M A;  3WZY A;  2UXQ A;  1IPD A;  2D1C A;  3INM A;  1PS7 A;  2D4V A;  3VML A;  5L57 A;  4HCX A;  1ISO A;  5K11 A;  2QFW A;  7ICD A;  1XAD A;  3WZV A;  1GC9 A;  4AOU A;  4I3L A;  4F7I A;  5GRL A;  1HJ6 A;  1XKD A;  1DR8 A;  1PB3 A;  1VI1 A;  3LXY A;  2Y41 A;  5DE1 A;  4Y1P A;  5J33 A;  3BLX A;  4P69 C;  4YB4 A;  3FMX X;  2QFV A;  1HQS A;  4AOY A;  9ICD A;  1T09 A;  4L04 A;  1XAA A;  4KZO A;  5GRF A;  4AOV A;  2Y3Z A;  1A05 A;  2DHT A;  3UDU A;  1GC8 A;  1ZOR A;  3ASJ A;  3ICD A;  4JA8 A;  3VL4 A;  1PS6 A;  1DPZ A;  3BLV A;  4XRX A;  1IDE A;  1V53 A;  1AI2 A;  4XXV A;  1WPW A;  2Y42 A;  3TY3 A;  3LCB C;  1CNZ A;  4UMX A;  2G4O A;  3U1H A;  1V5B A;  1BL5 A;  2IV0 A;  3TSN A;  2E0C A;  1VLC A;  5GRI A;  3TY4 A;  5GRL B;  1WAL A;  4JQP A;  6ICD A;  1PTM A;  2Y40 A;  3MAP A;  1X0L A;  3AH3 A;  1G2U A;  3WZW A;  3BLX B;  4AJC A;  5I96 A;  1P8F A;  3DMS A;  1CW7 A;  1YXO A;  3FLK A;  5GRH A;  1IDC A;  1XAC A;  5GRF B;  1OSJ A;  5HN4 A;  4ICD A;  4AJA A;  4XS3 A;  4IWH A;  3R8W A;  4UMY A;  1GRO A;  1DR0 A;  3BLV B;  5HN6 A;  1IDF A;  1IDD A;  1IKA A;  1OSI A;  2HI1 A;  3MAR A;  1HEX A;  1SJS A;  4WUO A;  5HN3 A;  2QFX A;  3UDO A;  5J34 A;  5J32 A;  2UXR A;  3MAS A;  3WZX A;  1W0D A;  5GRI B;  5ICD A;  5LGE A;  5GRE A;  3VKZ A;  1TYO A;  5I95 A;  3UF6 A; 
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