1XXMC

The modular architecture of protein-protein binding site
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
165
structure length
165
Chain Sequence
AGVMTGAKFTQIQFGMTRQQVLDIAGAENCETGGSFGDSIHCRGHAAGDYYAYATFGFTSAAADAKVDSKSQEALLAPSAPTLTLAKFNQVTVGMTRAQVLATVGQGSCTTWSEYYPAYPSTAGVTLSLSCFDVDGYSSTGAARGSAHLWFTDGVLQGKRQWDLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Beta-lactamase TEM
publication title The modular architecture of protein-protein binding interfaces
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase/hydrolase inhibitor
total genus 46
structure length 165
sequence length 165
chains with identical sequence D
ec nomenclature
pdb deposition date 2004-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF07467 BLIP Beta-lactamase inhibitor (BLIP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 1xxmC01
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 1xxmC02
5EKQE 5AYWE 2YH9A 3C7UB 2G2UB 3C4OB 2PXGA 4DM5A 5D0QE 2KM7A 3E2LC 3E2KC 2G2WB 3N4IB 2B5RC 3C4PB 1S0WC 2KXXA 3D4EA 5D0OE 3GMUB 3C7VB 1XXMC 1JTGB
chains in the Genus database with same CATH superfamily
5EKQE 5AYWE 2YH9A 3C7UB 2G2UB 3C4OB 2PXGA 3NWAA 4DM5A 5D0QE 2KM7A 3E2LC 2GUMA 3E2KC 2G2WB 3N4IB 2B5RC 3NWFA 3NW8A 3C4PB 1S0WC 2KXXA 3D4EA 5D0OE 3GMUB 3C7VB 4L1RA 4HSIA 3FVCA 1XXMC 1JTGB 3NWDA
chains in the Genus database with same CATH topology
5EKQE 5AYWE 2YH9A 3C7UB 2G2UB 3C4OB 2PXGA 3NWAA 4DM5A 5D0QE 2KM7A 3E2LC 2GUMA 3E2KC 2G2WB 3N4IB 2B5RC 3NWFA 3NW8A 3C4PB 1S0WC 2KXXA 3D4EA 5D0OE 3GMUB 3C7VB 4L1RA 4HSIA 3FVCA 1XXMC 1JTGB 3NWDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EKQ E;  5AYW E;  2YH9 A;  3C7U B;  2G2U B;  3C4O B;  2PXG A;  4DM5 A;  5D0Q E;  2KM7 A;  3E2L C;  3E2K C;  2G2W B;  3N4I B;  2B5R C;  3C4P B;  1S0W C;  2KXX A;  3D4E A;  5D0O E;  3GMU B;  3C7V B;  1XXM C;  1JTG B; 
#chains in the Genus database with same CATH topology
 5EKQ E;  5AYW E;  2YH9 A;  3C7U B;  2G2U B;  3C4O B;  2PXG A;  3NWA A;  4DM5 A;  5D0Q E;  2KM7 A;  3E2L C;  2GUM A;  3E2K C;  2G2W B;  3N4I B;  2B5R C;  3NWF A;  3NW8 A;  3C4P B;  1S0W C;  2KXX A;  3D4E A;  5D0O E;  3GMU B;  3C7V B;  4L1R A;  4HSI A;  3FVC A;  1XXM C;  1JTG B;  3NWD A; 
#chains in the Genus database with same CATH homology
 5EKQ E;  5AYW E;  2YH9 A;  3C7U B;  2G2U B;  3C4O B;  2PXG A;  3NWA A;  4DM5 A;  5D0Q E;  2KM7 A;  3E2L C;  2GUM A;  3E2K C;  2G2W B;  3N4I B;  2B5R C;  3NWF A;  3NW8 A;  3C4P B;  1S0W C;  2KXX A;  3D4E A;  5D0O E;  3GMU B;  3C7V B;  4L1R A;  4HSI A;  3FVC A;  1XXM C;  1JTG B;  3NWD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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