4L1RA

Glycoprotein b from herpes simplex virus type 1, a549t rate-of-entry mutant, low-ph
Total Genus 136
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
622
structure length
608
Chain Sequence
DIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNTIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Envelope glycoprotein B
source organism Human herpesvirus 1
total genus 136
structure length 608
sequence length 622
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00606 Glycoprotein_B Herpesvirus Glycoprotein B ectodomain
A PF17416 Glycoprot_B_PH1 Herpesvirus Glycoprotein B
A PF17417 Glycoprot_B_PH2 Herpesvirus Glycoprotein B PH-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.100 Mainly Beta Roll PH-domain like PH-domain like 4l1rA03
3.30.1450.20 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 4l1rA01
4HSIA 3NWDA 3NWFA 3NWAA 4OSNA 4L1RA 3NW8A 3FVCA 4OT1A 2GUMA
chains in the Genus database with same CATH superfamily
4DX8A 2K8EA 2GS0A 2OTXA 2L2IA 1ZC4B 2KM7A 1X86A 3ODWA 5I2MA 4XWXA 1MK9B 4PNKA 1DROA 4GOUA 2BCJA 3QWMA 1GC6A 3FM8C 2P0HA 2R0DA 3KSYA 4GMXB 1PMSA 3WYFB 3NW8A 2MFQA 1XKEA 2Z0OA 1WGUA 4HATB 2AL6A 5KQ4A 1BTKA 1MK7B 2H7DA 1V89A 4GN1A 3U8ZA 2B5RC 5J3QA 1MIZB 1QQGA 2J0MA 4HAVB 3SV1A 3ZVRA 1FGYA 3B77A 1I2HA 4A5KA 1FAOA 5HE1A 1W1DA 5LONB 3TCAA 1J0WA 3MPXA 2DHJA 4TKNA 5HE2A 4CHMA 3N7CA 3SNHA 1SGHA 2N23A 1FGZA 4DM5A 1K5GB 2ELAA 2G35A 1T77A 2K49A 5LG4B 1V61A 5HE0A 2K00A 2EMSA 2GJYA 3D8FA 3T06A 1U27A 4Z2NA 3D8EA 1S0WC 3HSAA 1OY2A 2YS3A 1E5WA 1WI1A 1BWNA 2D2QA 4B6HA 1W1GA 2FJUB 2YH9A 4QXAB 3SO6A 2CY4A 5CLLB 1WG7A 4C0AA 3QIJA 1BTNA 2H7EA 1X05A 3ML4A 3ZDTA 3AJ4A 2ELBA 1M7EA 2YT0A 4HB0B 1EF1A 4IFSA 2UVMA 3NWFA 1P5TA 3PG7A 3HW2B 3A8PA 5DHAB 2IFSA 2RUKB 3X23A 3PVUA 2YS1A 1UNPA 5DI9B 5IRSA 2J0KA 5D3XA 1X1GA 2LULA 1GG3A 3PVWA 3KRXA 2DHIA 1WJMA 1X1FA 2VRWB 3ODXA 4YL8A 1W1HA 1DDWA 2D10A 3RCPA 3PVLA 3C7VB 5L81A 1DYNA 2DHKA 3AU4A 2EC1A 1N3HA 2RNRB 4HAYB 5GOWB 3GYOA 2CAYA 1U2BA 1UPQA 3E2LC 2DKPA 2D4QA 4F7HA 3OANA 4GXBA 4QJ5B 1JTGB 2DN6A 3PSCA 1U5FA 2YT1A 1V5MA 3D8DA 4MK0A 1RRPB 2JP2A 2P8VA 2OQBA 4ZRJA 1MI1A 1PLSA 2YRYA 1X11A 5HE3A 4BBKA 2Z59A 1OQNA 2KXXA 1U29A 3SUZA 1H10A 4A6FB 4K17A 4KHAA 2I5CA 2KUQA 4EJNA 2KR0A 3F0WA 1UEFA 5CLQB 2NZ8B 3U7DA 1WJ1A 1KI1B 3TO1A 2CY5A 1V5UA 3F5RA 2DYQA 5D3WA 3BINA 3V5WA 1FB8A 1V5PA 2RSGA 4HAZB 1H4RA 2V76A 1PFJA 2QKLA 4A6FA 1I7AA 1ZSQA 2MDXA 2YS5A 2DLWA 2ZKMX 1XX0A 1ZVRA 4P7IA 4PQ0A 2GUMA 4F7GA 4HDOA 1GC7A 3SYXA 4KHBA 1V88A 4OT1A 2DYNA 2RGNB 1OMWA 1FHOA 2GCJA 1DDMA 2G2WB 3CXBB 4ZRKA 2W2XC 2K2UA 2D11A 3NWDA 1U5EA 1MAIA 1NU2A 2HTHB 1RJ2A 3O96A 4D6WA 3U12A 4QJ3B 1FHXA 3C4OB 1XXMC 4TYZA 2DX5A 1BAKA 1WVHA 4A6HA 1U5GA 4Y94A 1M7RA 2N0YA 2RVBB 2Z13A 4K2PA 5D27A 3HQCA 2LYDA 2YSZA 3A58A 1AQCA 4IAPA 2AEHA 3IVFA 2LG1A 1MIXA 1XR0B 2YF0A 2VSZA 2L1CA 2COCA 4GPTB 5D0OE 4F7UP 4NY0A 5JHGA 4HAWB 5C5BB 2D9ZA 2M38A 2J59M 5M4YB 3PZDA 5EKQE 1MPHA 2P0DA 3C4PB 1XCGA 4QJ4B 2M14A 2I1JA 3FVCA 1EGXA 5J3TA 1ZC3B 2Z4DA 3VIAA 4Z2MB 4HHVA 4A6KA 3A98B 4HAXB 1QC6A 2KUPA 3E2KC 4GMVA 1P3RA 2COAA 4HDQA 1UNQA 1KZ7A 2X18A 3M1IB 5C5BA 3KZ1A 2D9WA 1ZYIA 3PEGA 4HB4B 3KY9A 1ZM0A 1NI2A 3HK0A 1FOEA 4WVFB 2VKIA 3D4EA 3NWAA 4KHOA 2K2JA 5D3VA 3FSSA 4L6EA 2ZPYA 3ULCA 3DCXA 4L1RA 1ISNA 1B55A 2UZSA 2P0FA 4HB3B 2R2YA 2E2XA 2MKRA 1MKEA 4K2OA 3MDBC 4KHBB 3TW1A 3TFMA 5D0QE 1P6SA 5LOPB 2GCLA 3ULBA 2XQNM 3G9WA 1TQZA 2COFA 3C7UB 1K5DB 2KIGA 2RLOA 1J19A 3P6AA 4DIXA 4GNKB 4EKUA 2DA0A 3LJUX 1IRSA 1Q67A 2CRFA 3DXDA 5C6RA 5DH9B 4KVGB 2G2UB 3PP2A 2KCJA 4IOYX 4HAUB 4DBBA 5KQ1A 2D9XA 2J0JA 5AYWE 2KGXB 3AU5A 3DXEA 2EMTA 4EMOA 2KIEA 4NSWA 3GMUB 2Y8GA 2ADZA 5J3YA 4DXAB 5FI1A 3N4IB 1UPRA 2EJ8A 1NTVA 4H8SA 3P7ZA 3HIEA 2QKMA 5D3YA 1UNRA 2HE7A 5C79A 4MT7A 4WJ7A 4D0NB 3VOQA 1FHWA 2PZ1A 1LB1A 4ZRIA 2D9VA 3TVVA 2NMBA 3GYPA 3UZTA 2W2XD 3NSUA 2MWNB 1TJ6A 2I5FA 4HB2B 1LW3A 2RRFA 2UZRA 2PXGA 5DIFB 1NTYA 2I1KA 1XD4A 3ODOA 3QBVB 2W2WA 2Z14A 1TXDA 3KRWA 2LOZA 2D9YA 2ROZB 4HSIA 4DX90 4YONA 1EVHA 3A8QA 4K81A 3WA0A 1Y19B 5JHHA 1DDVA 4CHJA 2Y7BA 5KCVA 4CYEA 4OSNA 4GZUA 1WGQA 1AWEA 3OHMB 5DHFB 5JP4A 2ROVA 2DTCA 2YT2A 1Z87A 2CODA 5FI0A 1SHCA 2Z0QA 5C16A 2Y8FA 2DFKA 2Q13A 1U5DA 1XODA 2YVCA 4WSFA 4KAXB 3CIKA 2DKQA 4CSQA 2FJLA 3BJIA 5JLJB 2LOXA 4MY6A 1DBHA 5EFXA 2R09A 2IYBA 2NBVA 2DX1A 5I2SA 2LKOA 1Y5OA 3FEHA 2Z0PA 3DXCA 1KZGA 1EAZA
chains in the Genus database with same CATH topology
5IRSA 3NWDA 2K8EA 2KM7A 4DIXA 4GNKB 4D6WA 3U12A 4QJ3B 5I2MA 3C4OB 4GOUA 1XXMC 2G2UB 3C7VB 4IOYX 2Z13A 5AYWE 3NW8A 2KIEA 3A58A 3GYOA 3GMUB 3E2LC 3N4IB 2B5RC 5D0OE 3HIEA 4QJ5B 1JTGB 5M4YB 3TVVA 5EKQE 3GYPA 3C4PB 4QJ4B 3FVCA 2RRFA 2PXGA 2Z4DA 2Z59A 2KXXA 2Z14A 4Z2MB 4DM5A 4HSIA 4KHAA 3E2KC 2KUQA 2KR0A 2K49A 5LG4B 1ZYIA 4Z2NA 4OSNA 1S0WC 3TO1A 3OHMB 3D4EA 3NWAA 4KHOA 2YT2A 2YH9A 3FSSA 2FJUB 4QXAB 4L1RA 2ZKMX 2R2YA 4PQ0A 4CSQA 4IFSA 2GUMA 3NWFA 4KHBA 4KHBB 3TW1A 4OT1A 2NBVA 5D0QE 5I2SA 2GCJA 2GCLA 2G2WB 3C7UB 2KIGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HSI A;  3NWD A;  3NWF A;  3NWA A;  4OSN A;  4L1R A;  3NW8 A;  3FVC A;  4OT1 A;  2GUM A; 
#chains in the Genus database with same CATH topology
 4DX8 A;  2K8E A;  2GS0 A;  2OTX A;  2L2I A;  1ZC4 B;  2KM7 A;  1X86 A;  3ODW A;  5I2M A;  4XWX A;  1MK9 B;  4PNK A;  1DRO A;  4GOU A;  2BCJ A;  3QWM A;  1GC6 A;  3FM8 C;  2P0H A;  2R0D A;  3KSY A;  4GMX B;  1PMS A;  3WYF B;  3NW8 A;  2MFQ A;  1XKE A;  2Z0O A;  1WGU A;  4HAT B;  2AL6 A;  5KQ4 A;  1BTK A;  1MK7 B;  2H7D A;  1V89 A;  4GN1 A;  3U8Z A;  2B5R C;  5J3Q A;  1MIZ B;  1QQG A;  2J0M A;  4HAV B;  3SV1 A;  3ZVR A;  1FGY A;  3B77 A;  1I2H A;  4A5K A;  1FAO A;  5HE1 A;  1W1D A;  5LON B;  3TCA A;  1J0W A;  3MPX A;  2DHJ A;  4TKN A;  5HE2 A;  4CHM A;  3N7C A;  3SNH A;  1SGH A;  2N23 A;  1FGZ A;  4DM5 A;  1K5G B;  2ELA A;  2G35 A;  1T77 A;  2K49 A;  5LG4 B;  1V61 A;  5HE0 A;  2K00 A;  2EMS A;  2GJY A;  3D8F A;  3T06 A;  1U27 A;  4Z2N A;  3D8E A;  1S0W C;  3HSA A;  1OY2 A;  2YS3 A;  1E5W A;  1WI1 A;  1BWN A;  2D2Q A;  4B6H A;  1W1G A;  2FJU B;  2YH9 A;  4QXA B;  3SO6 A;  2CY4 A;  5CLL B;  1WG7 A;  4C0A A;  3QIJ A;  1BTN A;  2H7E A;  1X05 A;  3ML4 A;  3ZDT A;  3AJ4 A;  2ELB A;  1M7E A;  2YT0 A;  4HB0 B;  1EF1 A;  4IFS A;  2UVM A;  3NWF A;  1P5T A;  3PG7 A;  3HW2 B;  3A8P A;  5DHA B;  2IFS A;  2RUK B;  3X23 A;  3PVU A;  2YS1 A;  1UNP A;  5DI9 B;  5IRS A;  2J0K A;  5D3X A;  1X1G A;  2LUL A;  1GG3 A;  3PVW A;  3KRX A;  2DHI A;  1WJM A;  1X1F A;  2VRW B;  3ODX A;  4YL8 A;  1W1H A;  1DDW A;  2D10 A;  3RCP A;  3PVL A;  3C7V B;  5L81 A;  1DYN A;  2DHK A;  3AU4 A;  2EC1 A;  1N3H A;  2RNR B;  4HAY B;  5GOW B;  3GYO A;  2CAY A;  1U2B A;  1UPQ A;  3E2L C;  2DKP A;  2D4Q A;  4F7H A;  3OAN A;  4GXB A;  4QJ5 B;  1JTG B;  2DN6 A;  3PSC A;  1U5F A;  2YT1 A;  1V5M A;  3D8D A;  4MK0 A;  1RRP B;  2JP2 A;  2P8V A;  2OQB A;  4ZRJ A;  1MI1 A;  1PLS A;  2YRY A;  1X11 A;  5HE3 A;  4BBK A;  2Z59 A;  1OQN A;  2KXX A;  1U29 A;  3SUZ A;  1H10 A;  4A6F B;  4K17 A;  4KHA A;  2I5C A;  2KUQ A;  4EJN A;  2KR0 A;  3F0W A;  1UEF A;  5CLQ B;  2NZ8 B;  3U7D A;  1WJ1 A;  1KI1 B;  3TO1 A;  2CY5 A;  1V5U A;  3F5R A;  2DYQ A;  5D3W A;  3BIN A;  3V5W A;  1FB8 A;  1V5P A;  2RSG A;  4HAZ B;  1H4R A;  2V76 A;  1PFJ A;  2QKL A;  4A6F A;  1I7A A;  1ZSQ A;  2MDX A;  2YS5 A;  2DLW A;  2ZKM X;  1XX0 A;  1ZVR A;  4P7I A;  4PQ0 A;  2GUM A;  4F7G A;  4HDO A;  1GC7 A;  3SYX A;  4KHB A;  1V88 A;  4OT1 A;  2DYN A;  2RGN B;  1OMW A;  1FHO A;  2GCJ A;  1DDM A;  2G2W B;  3CXB B;  4ZRK A;  2W2X C;  2K2U A;  2D11 A;  3NWD A;  1U5E A;  1MAI A;  1NU2 A;  2HTH B;  1RJ2 A;  3O96 A;  4D6W A;  3U12 A;  4QJ3 B;  1FHX A;  3C4O B;  1XXM C;  4TYZ A;  2DX5 A;  1BAK A;  1WVH A;  4A6H A;  1U5G A;  4Y94 A;  1M7R A;  2N0Y A;  2RVB B;  2Z13 A;  4K2P A;  5D27 A;  3HQC A;  2LYD A;  2YSZ A;  3A58 A;  1AQC A;  4IAP A;  2AEH A;  3IVF A;  2LG1 A;  1MIX A;  1XR0 B;  2YF0 A;  2VSZ A;  2L1C A;  2COC A;  4GPT B;  5D0O E;  4F7U P;  4NY0 A;  5JHG A;  4HAW B;  5C5B B;  2D9Z A;  2M38 A;  2J59 M;  5M4Y B;  3PZD A;  5EKQ E;  1MPH A;  2P0D A;  3C4P B;  1XCG A;  4QJ4 B;  2M14 A;  2I1J A;  3FVC A;  1EGX A;  5J3T A;  1ZC3 B;  2Z4D A;  3VIA A;  4Z2M B;  4HHV A;  4A6K A;  3A98 B;  4HAX B;  1QC6 A;  2KUP A;  3E2K C;  4GMV A;  1P3R A;  2COA A;  4HDQ A;  1UNQ A;  1KZ7 A;  2X18 A;  3M1I B;  5C5B A;  3KZ1 A;  2D9W A;  1ZYI A;  3PEG A;  4HB4 B;  3KY9 A;  1ZM0 A;  1NI2 A;  3HK0 A;  1FOE A;  4WVF B;  2VKI A;  3D4E A;  3NWA A;  4KHO A;  2K2J A;  5D3V A;  3FSS A;  4L6E A;  2ZPY A;  3ULC A;  3DCX A;  4L1R A;  1ISN A;  1B55 A;  2UZS A;  2P0F A;  4HB3 B;  2R2Y A;  2E2X A;  2MKR A;  1MKE A;  4K2O A;  3MDB C;  4KHB B;  3TW1 A;  3TFM A;  5D0Q E;  1P6S A;  5LOP B;  2GCL A;  3ULB A;  2XQN M;  3G9W A;  1TQZ A;  2COF A;  3C7U B;  1K5D B;  2KIG A;  2RLO A;  1J19 A;  3P6A A;  4DIX A;  4GNK B;  4EKU A;  2DA0 A;  3LJU X;  1IRS A;  1Q67 A;  2CRF A;  3DXD A;  5C6R A;  5DH9 B;  4KVG B;  2G2U B;  3PP2 A;  2KCJ A;  4IOY X;  4HAU B;  4DBB A;  5KQ1 A;  2D9X A;  2J0J A;  5AYW E;  2KGX B;  3AU5 A;  3DXE A;  2EMT A;  4EMO A;  2KIE A;  4NSW A;  3GMU B;  2Y8G A;  2ADZ A;  5J3Y A;  4DXA B;  5FI1 A;  3N4I B;  1UPR A;  2EJ8 A;  1NTV A;  4H8S A;  3P7Z A;  3HIE A;  2QKM A;  5D3Y A;  1UNR A;  2HE7 A;  5C79 A;  4MT7 A;  4WJ7 A;  4D0N B;  3VOQ A;  1FHW A;  2PZ1 A;  1LB1 A;  4ZRI A;  2D9V A;  3TVV A;  2NMB A;  3GYP A;  3UZT A;  2W2X D;  3NSU A;  2MWN B;  1TJ6 A;  2I5F A;  4HB2 B;  1LW3 A;  2RRF A;  2UZR A;  2PXG A;  5DIF B;  1NTY A;  2I1K A;  1XD4 A;  3ODO A;  3QBV B;  2W2W A;  2Z14 A;  1TXD A;  3KRW A;  2LOZ A;  2D9Y A;  2ROZ B;  4HSI A;  4DX9 0;  4YON A;  1EVH A;  3A8Q A;  4K81 A;  3WA0 A;  1Y19 B;  5JHH A;  1DDV A;  4CHJ A;  2Y7B A;  5KCV A;  4CYE A;  4OSN A;  4GZU A;  1WGQ A;  1AWE A;  3OHM B;  5DHF B;  5JP4 A;  2ROV A;  2DTC A;  2YT2 A;  1Z87 A;  2COD A;  5FI0 A;  1SHC A;  2Z0Q A;  5C16 A;  2Y8F A;  2DFK A;  2Q13 A;  1U5D A;  1XOD A;  2YVC A;  4WSF A;  4KAX B;  3CIK A;  2DKQ A;  4CSQ A;  2FJL A;  3BJI A;  5JLJ B;  2LOX A;  4MY6 A;  1DBH A;  5EFX A;  2R09 A;  2IYB A;  2NBV A;  2DX1 A;  5I2S A;  2LKO A;  1Y5O A;  3FEH A;  2Z0P A;  3DXC A;  1KZG A;  1EAZ A; 
#chains in the Genus database with same CATH homology
 5IRS A;  3NWD A;  2K8E A;  2KM7 A;  4DIX A;  4GNK B;  4D6W A;  3U12 A;  4QJ3 B;  5I2M A;  3C4O B;  4GOU A;  1XXM C;  2G2U B;  3C7V B;  4IOY X;  2Z13 A;  5AYW E;  3NW8 A;  2KIE A;  3A58 A;  3GYO A;  3GMU B;  3E2L C;  3N4I B;  2B5R C;  5D0O E;  3HIE A;  4QJ5 B;  1JTG B;  5M4Y B;  3TVV A;  5EKQ E;  3GYP A;  3C4P B;  4QJ4 B;  3FVC A;  2RRF A;  2PXG A;  2Z4D A;  2Z59 A;  2KXX A;  2Z14 A;  4Z2M B;  4DM5 A;  4HSI A;  4KHA A;  3E2K C;  2KUQ A;  2KR0 A;  2K49 A;  5LG4 B;  1ZYI A;  4Z2N A;  4OSN A;  1S0W C;  3TO1 A;  3OHM B;  3D4E A;  3NWA A;  4KHO A;  2YT2 A;  2YH9 A;  3FSS A;  2FJU B;  4QXA B;  4L1R A;  2ZKM X;  2R2Y A;  4PQ0 A;  4CSQ A;  4IFS A;  2GUM A;  3NWF A;  4KHB A;  4KHB B;  3TW1 A;  4OT1 A;  2NBV A;  5D0Q E;  5I2S A;  2GCJ A;  2GCL A;  2G2W B;  3C7U B;  2KIG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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