4L1RA

Glycoprotein b from herpes simplex virus type 1, a549t rate-of-entry mutant, low-ph
Total Genus 136
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
622
structure length
608
Chain Sequence
DIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNTIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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source organism Human herpesvirus 1
molecule tags Viral protein
molecule keywords Envelope glycoprotein B
total genus 136
structure length 608
sequence length 622
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00606 Glycoprotein_B Herpesvirus Glycoprotein B ectodomain
A PF17416 Glycoprot_B_PH1 Herpesvirus Glycoprotein B
A PF17417 Glycoprot_B_PH2 Herpesvirus Glycoprotein B PH-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.100 Mainly Beta Roll PH-domain like PH-domain like 4l1rA03
3.30.1450.20 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 4l1rA01
3NWAA 3NW8A 4OSNA 3FVCA 4HSIA 3NWFA 4OT1A 4L1RA 2GUMA 3NWDA
chains in the Genus database with same CATH superfamily
2PXGA 2I1JA 1XODA 3ODOA 3ZVRA 1OMWA 2KM7A 2JP2A 1XR0B 2DKQA 5KQ4A 2ELBA 5LONB 1ZSQA 3NWAA 1EF1A 2K8EA 2HTHB 3VIAA 1FOEA 1IRSA 5C16A 4HAXB 1AQCA 2J59M 1X11A 5DHAB 1KZ7A 3CXBB 3TCAA 2YF0A 2DN6A 2ROZB 1XXMC 2GS0A 1FHWA 4EKUA 4DM5A 2W2XC 4KHBA 2R09A 2XQNM 4XWXA 2KR0A 2UVMA 1WJMA 1U5FA 2GCJA 3A8PA 2G2WB 2H7EA 4CHJA 4WJ7A 4GOUA 2K2JA 5JP4A 3FEHA 2FJUB 1E5WA 4F7UP 4PQ0A 1PMSA 2EMSA 1MAIA 1X1FA 2MFQA 3UZTA 4MT7A 1GC6A 3O96A 2YS5A 4QJ5B 1P5TA 2H7DA 2EJ8A 4Y94A 1WJ1A 3CIKA 1MKEA 5J3YA 5D3VA 2K00A 1FHXA 3ODWA 1OY2A 2RNRB 5DIFB 1QC6A 4EJNA 2LOXA 1BTKA 4GMVA 5C79A 1WVHA 2DYNA 3X23A 4HDQA 4K17A 3OHMB 1KI1B 4L1RA 4D0NB 1TJ6A 2R0DA 5I2SA 1ZVRA 2OQBA 2YT1A 5EKQE 1I2HA 1W1GA 5C5BB 2DYQA 2GCLA 5HE3A 2YVCA 2Z0OA 4K2PA 2CY5A 4QJ4B 2DLWA 1U29A 3MPXA 4K81A 4HAVB 4HAUB 1FGYA 3OANA 4GNKB 1P6SA 2Z59A 4HATB 4WSFA 1BAKA 4OSNA 5D3YA 2X18A 2EMTA 2HE7A 3NWDA 1LB1A 3SYXA 4DXAB 2LOZA 2D9VA 4NY0A 3G9WA 1PLSA 4GXBA 4C0AA 1K5DB 2GJYA 3N4IB 3FVCA 5CLLB 4A5KA 5AYWE 2NZ8B 3BINA 3C7VB 5LOPB 2YH9A 3PVUA 1EVHA 1V88A 2D9XA 2Y8GA 4K2OA 2NMBA 1TQZA 2OTXA 4KHOA 4YL8A 3U7DA 1FHOA 3HSAA 2NBVA 4KAXB 1X05A 1P3RA 1UNQA 4HHVA 2D2QA 3SUZA 3HIEA 1FB8A 2EC1A 5I2MA 4MK0A 3U12A 1Q67A 2IYBA 4BBKA 5IRSA 1EAZA 4Z2MB 3AU4A 1LW3A 3FSSA 2DX1A 3P6AA 3AJ4A 4QXAB 2J0JA 2I5FA 4DX90 5DHFB 5DI9B 4D6WA 2DX5A 2ZKMX 4HSIA 3KRXA 3PVLA 2LYDA 1DDMA 1SGHA 3ML4A 2GUMA 2D9WA 2KIEA 1U5GA 4GMXB 1ISNA 2I1KA 3KSYA 1DDWA 2Z13A 2DFKA 1V5MA 4HB4B 3QIJA 4MY6A 4HAWB 5FI1A 3AU5A 1Z87A 3M1IB 5D0OE 1U27A 3C7UB 2YRYA 4F7HA 2RRFA 2FJLA 4HAZB 1J19A 3LJUX 3E2LC 3ODXA 1J0WA 5L81A 1EGXA 1ZC3B 2Z4DA 4A6FA 2CODA 2CAYA 2AL6A 1DBHA 3HQCA 3C4OB 2RGNB 3B77A 1W1HA 3HK0A 4DX8A 2RVBB 2P0HA 3A98B 2LKOA 1U5EA 1PFJA 1N3HA 1XD4A 3PZDA 3P7ZA 1B55A 1ZM0A 2KUQA 4NSWA 5J3QA 2DA0A 2G35A 3PP2A 4ZRKA 5D0QE 4TKNA 2RUKB 5JHHA 4P7IA 3D8FA 3WA0A 1GG3A 3D8EA 2DHJA 2V76A 5J3TA 1UNRA 5KQ1A 4IFSA 1WG7A 2KXXA 1GC7A 5HE2A 2CRFA 2D4QA 2YS1A 2P8VA 4F7GA 1WGQA 4TYZA 3GYOA 2D9YA 5EFXA 2I5CA 2VRWB 3QWMA 3F5RA 1M7EA 4CYEA 4IOYX 1MIZB 1RJ2A 3TO1A 3GMUB 1K5GB 1MPHA 2Z14A 2Z0PA 2AEHA 5HE1A 1X86A 4KVGB 4A6KA 3TFMA 2VSZA 1FAOA 2L1CA 1V5PA 4HB0B 3KRWA 1OQNA 2DKPA 1U5DA 1X1GA 3ZDTA 4Z2NA 2L2IA 1UPRA 3HW2B 4CHMA 2D9ZA 3A58A 3RCPA 3PEGA 4CSQA 4DBBA 3TVVA 3NW8A 1TXDA 2IFSA 2ZPYA 1KZGA 2Z0QA 1BTNA 1ZC4B 2M38A 1ZYIA 1MK7B 1I7AA 3PG7A 5KCVA 4ZRJA 2COAA 1U2BA 3DXEA 2KGXB 1BWNA 4A6HA 3F0WA 5LG4B 3MDBC 2K49A 1UEFA 2MDXA 2KIGA 1DROA 2D11A 4HDOA 1Y19B 2RLOA 2ADZA 3GYPA 1RRPB 3NSUA 1WGUA 2J0KA 2UZRA 4WVFB 4QJ3B 2KCJA 2Y7BA 2LULA 1MK9B 2ROVA 2Y8FA 4DIXA 2VKIA 1UPQA 2E2XA 2PZ1A 2B5RC 2ELAA 2QKMA 1NTVA 3KY9A 2R2YA 2P0FA 1M7RA 2K2UA 5JHGA 1SHCA 2D10A 2YS3A 1MI1A 2QKLA 4B6HA 2YSZA 2KUPA 1XCGA 1MIXA 3SNHA 1V5UA 1H10A 4GPTB 1AWEA 3SO6A 3DCXA 2RSGA 3NWFA 3V5WA 5C6RA 1WI1A 2N23A 1W1DA 5D3WA 2BCJA 1Y5OA 1NTYA 5C5BA 4L6EA 3ULBA 4HAYB 5FI0A 5CLQB 2W2WA 4IAPA 4HB3B 1QQGA 3A8QA 3DXDA 3PSCA 3D4EA 4YONA 5JLJB 2J0MA 4EMOA 1UNPA 2P0DA 1DYNA 5GOWB 3C4PB 3BJIA 3IVFA 2Q13A 5D3XA 3SV1A 5DH9B 5HE0A 2M14A 2MWNB 4GN1A 1H4RA 3PVWA 3QBVB 2N0YA 4PNKA 2DTCA 4A6FB 4HB2B 4H8SA 4OT1A 3KZ1A 4GZUA 2COCA 2UZSA 2DHIA 3E2KC 2YT0A 3U8ZA 3WYFB 4KHAA 2CY4A 5M4YB 3VOQA 2COFA 1DDVA 1FGZA 2DHKA 2MKRA 3DXCA 1NI2A 2G2UB 1S0WC 1XKEA 5D27A 4KHBB 1V61A 1JTGB 1XX0A 2LG1A 4ZRIA 3ULCA 3FM8C 2W2XD 1NU2A 3T06A 1V89A 3D8DA 1T77A 2YT2A 3N7CA 3TW1A
chains in the Genus database with same CATH topology
4OSNA 2PXGA 2KM7A 5LG4B 2K49A 3NWDA 3NWAA 2KIGA 3GYPA 2K8EA 3N4IB 2KUQA 3FVCA 4QJ3B 5AYWE 4DIXA 5D0QE 3C7VB 2YH9A 1XXMC 2B5RC 4DM5A 2R2YA 4KHBA 4KHOA 4IFSA 2KXXA 2KR0A 2NBVA 2GCJA 2G2WB 4GOUA 3HIEA 3GYOA 2FJUB 3NWFA 5I2MA 3U12A 4PQ0A 5IRSA 4Z2MB 4IOYX 3FSSA 3TO1A 3D4EA 3GMUB 4QXAB 2Z14A 3C4PB 4QJ5B 4D6WA 2ZKMX 4HSIA 2GUMA 2KIEA 2Z13A 4OT1A 4Z2NA 5D0OE 3E2KC 3C7UB 4KHAA 2RRFA 3OHMB 4L1RA 3A58A 4CSQA 5M4YB 5I2SA 3TVVA 3NW8A 3E2LC 5EKQE 2G2UB 1S0WC 2GCLA 4KHBB 1JTGB 4QJ4B 1ZYIA 2Z4DA 2YT2A 3C4OB 4GNKB 2Z59A 3TW1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NWA A;  3NW8 A;  4OSN A;  3FVC A;  4HSI A;  3NWF A;  4OT1 A;  4L1R A;  2GUM A;  3NWD A; 
#chains in the Genus database with same CATH topology
 2PXG A;  2I1J A;  1XOD A;  3ODO A;  3ZVR A;  1OMW A;  2KM7 A;  2JP2 A;  1XR0 B;  2DKQ A;  5KQ4 A;  2ELB A;  5LON B;  1ZSQ A;  3NWA A;  1EF1 A;  2K8E A;  2HTH B;  3VIA A;  1FOE A;  1IRS A;  5C16 A;  4HAX B;  1AQC A;  2J59 M;  1X11 A;  5DHA B;  1KZ7 A;  3CXB B;  3TCA A;  2YF0 A;  2DN6 A;  2ROZ B;  1XXM C;  2GS0 A;  1FHW A;  4EKU A;  4DM5 A;  2W2X C;  4KHB A;  2R09 A;  2XQN M;  4XWX A;  2KR0 A;  2UVM A;  1WJM A;  1U5F A;  2GCJ A;  3A8P A;  2G2W B;  2H7E A;  4CHJ A;  4WJ7 A;  4GOU A;  2K2J A;  5JP4 A;  3FEH A;  2FJU B;  1E5W A;  4F7U P;  4PQ0 A;  1PMS A;  2EMS A;  1MAI A;  1X1F A;  2MFQ A;  3UZT A;  4MT7 A;  1GC6 A;  3O96 A;  2YS5 A;  4QJ5 B;  1P5T A;  2H7D A;  2EJ8 A;  4Y94 A;  1WJ1 A;  3CIK A;  1MKE A;  5J3Y A;  5D3V A;  2K00 A;  1FHX A;  3ODW A;  1OY2 A;  2RNR B;  5DIF B;  1QC6 A;  4EJN A;  2LOX A;  1BTK A;  4GMV A;  5C79 A;  1WVH A;  2DYN A;  3X23 A;  4HDQ A;  4K17 A;  3OHM B;  1KI1 B;  4L1R A;  4D0N B;  1TJ6 A;  2R0D A;  5I2S A;  1ZVR A;  2OQB A;  2YT1 A;  5EKQ E;  1I2H A;  1W1G A;  5C5B B;  2DYQ A;  2GCL A;  5HE3 A;  2YVC A;  2Z0O A;  4K2P A;  2CY5 A;  4QJ4 B;  2DLW A;  1U29 A;  3MPX A;  4K81 A;  4HAV B;  4HAU B;  1FGY A;  3OAN A;  4GNK B;  1P6S A;  2Z59 A;  4HAT B;  4WSF A;  1BAK A;  4OSN A;  5D3Y A;  2X18 A;  2EMT A;  2HE7 A;  3NWD A;  1LB1 A;  3SYX A;  4DXA B;  2LOZ A;  2D9V A;  4NY0 A;  3G9W A;  1PLS A;  4GXB A;  4C0A A;  1K5D B;  2GJY A;  3N4I B;  3FVC A;  5CLL B;  4A5K A;  5AYW E;  2NZ8 B;  3BIN A;  3C7V B;  5LOP B;  2YH9 A;  3PVU A;  1EVH A;  1V88 A;  2D9X A;  2Y8G A;  4K2O A;  2NMB A;  1TQZ A;  2OTX A;  4KHO A;  4YL8 A;  3U7D A;  1FHO A;  3HSA A;  2NBV A;  4KAX B;  1X05 A;  1P3R A;  1UNQ A;  4HHV A;  2D2Q A;  3SUZ A;  3HIE A;  1FB8 A;  2EC1 A;  5I2M A;  4MK0 A;  3U12 A;  1Q67 A;  2IYB A;  4BBK A;  5IRS A;  1EAZ A;  4Z2M B;  3AU4 A;  1LW3 A;  3FSS A;  2DX1 A;  3P6A A;  3AJ4 A;  4QXA B;  2J0J A;  2I5F A;  4DX9 0;  5DHF B;  5DI9 B;  4D6W A;  2DX5 A;  2ZKM X;  4HSI A;  3KRX A;  3PVL A;  2LYD A;  1DDM A;  1SGH A;  3ML4 A;  2GUM A;  2D9W A;  2KIE A;  1U5G A;  4GMX B;  1ISN A;  2I1K A;  3KSY A;  1DDW A;  2Z13 A;  2DFK A;  1V5M A;  4HB4 B;  3QIJ A;  4MY6 A;  4HAW B;  5FI1 A;  3AU5 A;  1Z87 A;  3M1I B;  5D0O E;  1U27 A;  3C7U B;  2YRY A;  4F7H A;  2RRF A;  2FJL A;  4HAZ B;  1J19 A;  3LJU X;  3E2L C;  3ODX A;  1J0W A;  5L81 A;  1EGX A;  1ZC3 B;  2Z4D A;  4A6F A;  2COD A;  2CAY A;  2AL6 A;  1DBH A;  3HQC A;  3C4O B;  2RGN B;  3B77 A;  1W1H A;  3HK0 A;  4DX8 A;  2RVB B;  2P0H A;  3A98 B;  2LKO A;  1U5E A;  1PFJ A;  1N3H A;  1XD4 A;  3PZD A;  3P7Z A;  1B55 A;  1ZM0 A;  2KUQ A;  4NSW A;  5J3Q A;  2DA0 A;  2G35 A;  3PP2 A;  4ZRK A;  5D0Q E;  4TKN A;  2RUK B;  5JHH A;  4P7I A;  3D8F A;  3WA0 A;  1GG3 A;  3D8E A;  2DHJ A;  2V76 A;  5J3T A;  1UNR A;  5KQ1 A;  4IFS A;  1WG7 A;  2KXX A;  1GC7 A;  5HE2 A;  2CRF A;  2D4Q A;  2YS1 A;  2P8V A;  4F7G A;  1WGQ A;  4TYZ A;  3GYO A;  2D9Y A;  5EFX A;  2I5C A;  2VRW B;  3QWM A;  3F5R A;  1M7E A;  4CYE A;  4IOY X;  1MIZ B;  1RJ2 A;  3TO1 A;  3GMU B;  1K5G B;  1MPH A;  2Z14 A;  2Z0P A;  2AEH A;  5HE1 A;  1X86 A;  4KVG B;  4A6K A;  3TFM A;  2VSZ A;  1FAO A;  2L1C A;  1V5P A;  4HB0 B;  3KRW A;  1OQN A;  2DKP A;  1U5D A;  1X1G A;  3ZDT A;  4Z2N A;  2L2I A;  1UPR A;  3HW2 B;  4CHM A;  2D9Z A;  3A58 A;  3RCP A;  3PEG A;  4CSQ A;  4DBB A;  3TVV A;  3NW8 A;  1TXD A;  2IFS A;  2ZPY A;  1KZG A;  2Z0Q A;  1BTN A;  1ZC4 B;  2M38 A;  1ZYI A;  1MK7 B;  1I7A A;  3PG7 A;  5KCV A;  4ZRJ A;  2COA A;  1U2B A;  3DXE A;  2KGX B;  1BWN A;  4A6H A;  3F0W A;  5LG4 B;  3MDB C;  2K49 A;  1UEF A;  2MDX A;  2KIG A;  1DRO A;  2D11 A;  4HDO A;  1Y19 B;  2RLO A;  2ADZ A;  3GYP A;  1RRP B;  3NSU A;  1WGU A;  2J0K A;  2UZR A;  4WVF B;  4QJ3 B;  2KCJ A;  2Y7B A;  2LUL A;  1MK9 B;  2ROV A;  2Y8F A;  4DIX A;  2VKI A;  1UPQ A;  2E2X A;  2PZ1 A;  2B5R C;  2ELA A;  2QKM A;  1NTV A;  3KY9 A;  2R2Y A;  2P0F A;  1M7R A;  2K2U A;  5JHG A;  1SHC A;  2D10 A;  2YS3 A;  1MI1 A;  2QKL A;  4B6H A;  2YSZ A;  2KUP A;  1XCG A;  1MIX A;  3SNH A;  1V5U A;  1H10 A;  4GPT B;  1AWE A;  3SO6 A;  3DCX A;  2RSG A;  3NWF A;  3V5W A;  5C6R A;  1WI1 A;  2N23 A;  1W1D A;  5D3W A;  2BCJ A;  1Y5O A;  1NTY A;  5C5B A;  4L6E A;  3ULB A;  4HAY B;  5FI0 A;  5CLQ B;  2W2W A;  4IAP A;  4HB3 B;  1QQG A;  3A8Q A;  3DXD A;  3PSC A;  3D4E A;  4YON A;  5JLJ B;  2J0M A;  4EMO A;  1UNP A;  2P0D A;  1DYN A;  5GOW B;  3C4P B;  3BJI A;  3IVF A;  2Q13 A;  5D3X A;  3SV1 A;  5DH9 B;  5HE0 A;  2M14 A;  2MWN B;  4GN1 A;  1H4R A;  3PVW A;  3QBV B;  2N0Y A;  4PNK A;  2DTC A;  4A6F B;  4HB2 B;  4H8S A;  4OT1 A;  3KZ1 A;  4GZU A;  2COC A;  2UZS A;  2DHI A;  3E2K C;  2YT0 A;  3U8Z A;  3WYF B;  4KHA A;  2CY4 A;  5M4Y B;  3VOQ A;  2COF A;  1DDV A;  1FGZ A;  2DHK A;  2MKR A;  3DXC A;  1NI2 A;  2G2U B;  1S0W C;  1XKE A;  5D27 A;  4KHB B;  1V61 A;  1JTG B;  1XX0 A;  2LG1 A;  4ZRI A;  3ULC A;  3FM8 C;  2W2X D;  1NU2 A;  3T06 A;  1V89 A;  3D8D A;  1T77 A;  2YT2 A;  3N7C A;  3TW1 A; 
#chains in the Genus database with same CATH homology
 4OSN A;  2PXG A;  2KM7 A;  5LG4 B;  2K49 A;  3NWD A;  3NWA A;  2KIG A;  3GYP A;  2K8E A;  3N4I B;  2KUQ A;  3FVC A;  4QJ3 B;  5AYW E;  4DIX A;  5D0Q E;  3C7V B;  2YH9 A;  1XXM C;  2B5R C;  4DM5 A;  2R2Y A;  4KHB A;  4KHO A;  4IFS A;  2KXX A;  2KR0 A;  2NBV A;  2GCJ A;  2G2W B;  4GOU A;  3HIE A;  3GYO A;  2FJU B;  3NWF A;  5I2M A;  3U12 A;  4PQ0 A;  5IRS A;  4Z2M B;  4IOY X;  3FSS A;  3TO1 A;  3D4E A;  3GMU B;  4QXA B;  2Z14 A;  3C4P B;  4QJ5 B;  4D6W A;  2ZKM X;  4HSI A;  2GUM A;  2KIE A;  2Z13 A;  4OT1 A;  4Z2N A;  5D0O E;  3E2K C;  3C7U B;  4KHA A;  2RRF A;  3OHM B;  4L1R A;  3A58 A;  4CSQ A;  5M4Y B;  5I2S A;  3TVV A;  3NW8 A;  3E2L C;  5EKQ E;  2G2U B;  1S0W C;  2GCL A;  4KHB B;  1JTG B;  4QJ4 B;  1ZYI A;  2Z4D A;  2YT2 A;  3C4O B;  4GNK B;  2Z59 A;  3TW1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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