2YH9A

Crystal structure of the dimeric bame from e. coli
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
66
structure length
66
Chain Sequence
b'VSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SMALL PROTEIN A
publication title Structural Basis of Outer Membrane Protein Biogenesis in Bacteria.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Membrane protein
total genus 9
structure length 66
sequence length 66
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2011-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04355 SmpA_OmlA SmpA / OmlA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 2yh9A00
3C4PB 3C7UB 3C4OB 2B5RC 1S0WC 5D0QE 4DM5A 2G2UB 2PXGA 1JTGB 2G2WB 3E2LC 3GMUB 2YH9A 2KXXA 5EKQE 1XXMC 5D0OE 5AYWE 3C7VB 3D4EA 2KM7A 3E2KC 3N4IB
chains in the Genus database with same CATH superfamily
4HSIA 3C4PB 3NWFA 4L1RA 3C7UB 3C4OB 2B5RC 1S0WC 5D0QE 4DM5A 3FVCA 2G2UB 2PXGA 1JTGB 2G2WB 3E2LC 3GMUB 2YH9A 2KXXA 5EKQE 1XXMC 2GUMA 5D0OE 5AYWE 3C7VB 3NWDA 3D4EA 2KM7A 3NW8A 3E2KC 3NWAA 3N4IB
chains in the Genus database with same CATH topology
4HSIA 3C4PB 3NWFA 4L1RA 3C7UB 3C4OB 2B5RC 1S0WC 5D0QE 4DM5A 3FVCA 2G2UB 2PXGA 1JTGB 2G2WB 3E2LC 3GMUB 2YH9A 2KXXA 5EKQE 1XXMC 2GUMA 5D0OE 5AYWE 3C7VB 3NWDA 3D4EA 2KM7A 3NW8A 3E2KC 3NWAA 3N4IB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C4P B;  3C7U B;  3C4O B;  2B5R C;  1S0W C;  5D0Q E;  4DM5 A;  2G2U B;  2PXG A;  1JTG B;  2G2W B;  3E2L C;  3GMU B;  2YH9 A;  2KXX A;  5EKQ E;  1XXM C;  5D0O E;  5AYW E;  3C7V B;  3D4E A;  2KM7 A;  3E2K C;  3N4I B; 
#chains in the Genus database with same CATH topology
 4HSI A;  3C4P B;  3NWF A;  4L1R A;  3C7U B;  3C4O B;  2B5R C;  1S0W C;  5D0Q E;  4DM5 A;  3FVC A;  2G2U B;  2PXG A;  1JTG B;  2G2W B;  3E2L C;  3GMU B;  2YH9 A;  2KXX A;  5EKQ E;  1XXM C;  2GUM A;  5D0O E;  5AYW E;  3C7V B;  3NWD A;  3D4E A;  2KM7 A;  3NW8 A;  3E2K C;  3NWA A;  3N4I B; 
#chains in the Genus database with same CATH homology
 4HSI A;  3C4P B;  3NWF A;  4L1R A;  3C7U B;  3C4O B;  2B5R C;  1S0W C;  5D0Q E;  4DM5 A;  3FVC A;  2G2U B;  2PXG A;  1JTG B;  2G2W B;  3E2L C;  3GMU B;  2YH9 A;  2KXX A;  5EKQ E;  1XXM C;  2GUM A;  5D0O E;  5AYW E;  3C7V B;  3NWD A;  3D4E A;  2KM7 A;  3NW8 A;  3E2K C;  3NWA A;  3N4I B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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