3FVCA

Crystal structure of a trimeric variant of the epstein-barr virus glycoprotein b
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
638
structure length
559
Chain Sequence
QQTSFPFRVCELSSHGDLFRFSSDIQCPSFENHTEGLLMVFKDNIIPYSFKVRSYTKIVTNILIYNGHRADSVTNRHEEKFSVDSYETDQMDTIYQCYNAVKMTKDGLTRVYVDRDGVNITVNLKPTGGLANGVRRYASQTELYDAPGRVEATYRTRTTVNCLITDMMAKSNSPFDFFVTTTGQTVEMSPFYDGKNKETFHERADSFHVRTNYKIVDYDNRGTNPQGERRAFLDKGTYTLSWKLENRTAYCPLQHWQTFDSTIATETGKSIHFVTDEGTSSFVTNTTVGIELPDAFKCIEEQVNKTMHEKYEAVQDRYTKGQEAITYFITSGGLLLAWLPLTPRSLKSLGTLNNPATVQIQFAYDSLRRQINRMLGDLARAWCLEQKRQNMVLRELTKINPTTVMSSIYGKAVAAKRLGDVISVSQCVPVNQATVTLRKSMRMCYSRPLVSFSFTKTYEGQLGTDNEIFATSQYYFQSGNEIHVYNDYHHFKTIELDGIATLQTFISLNTSLIENIDFASLELYSRDEQRASNVFDLEGIFREYNFQAQNIAGLRKDLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
source organism Human herpesvirus 4
publication title Structure of a trimeric variant of the Epstein-Barr virus glycoprotein B
pubmed doi rcsb
molecule keywords Glycoprotein GP110
total genus 112
structure length 559
sequence length 638
ec nomenclature
pdb deposition date 2009-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00606 Glycoprotein_B Herpesvirus Glycoprotein B ectodomain
A PF17416 Glycoprot_B_PH1 Herpesvirus Glycoprotein B
A PF17417 Glycoprot_B_PH2 Herpesvirus Glycoprotein B PH-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.100 Mainly Beta Roll PH-domain like PH-domain like 3fvcA03
3.30.1450.20 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 3fvcA01
4OSNA 4HSIA 3NWFA 3FVCA 3NWDA 4OT1A 3NW8A 2GUMA 4L1RA 3NWAA
chains in the Genus database with same CATH superfamily
3E2LC 5D0QE 5AYWE 1MK7B 3HIEA 2RUKB 3C7VB 2RGNB 4HAUB 5J3TA 4WJ7A 5J3YA 1XX0A 4KHBA 5D0OE 1BTNA 3ODXA 1FGYA 2UZSA 4A6HA 4DM5A 1OQNA 5D3VA 2DN6A 2YRYA 1WVHA 2EC1A 3F5RA 1E5WA 1IRSA 1SGHA 3A8PA 1MIXA 1J0WA 4PNKA 2UZRA 4P7IA 5KCVA 3NW8A 3GYOA 2IYBA 2COCA 2YVCA 4CSQA 2YT1A 1NU2A 1SHCA 5FI1A 3ML4A 3TO1A 5M4YB 5D3XA 1XCGA 3ODOA 1KI1B 1JTGB 3HQCA 4OT1A 1ZSQA 1ZVRA 3N7CA 4K2PA 1MAIA 1GG3A 4F7GA 1U2BA 4HAWB 2I1KA 2ZKMX 3PVLA 3C4PB 1MI1A 3DXEA 1ISNA 1K5DB 5CLQB 1V5UA 2KCJA 3PG7A 1V5MA 1W1HA 3FVCA 4K2OA 4HB0B 4GXBA 3A58A 3BINA 3D8FA 1P6SA 4GOUA 2IFSA 2MFQA 3C4OB 5DHAB 1FOEA 2VSZA 2JP2A 4K17A 1LB1A 1X1FA 5JHHA 2KM7A 3A8QA 3MDBC 2DHKA 2D2QA 5DIFB 3SV1A 2AL6A 2VKIA 1DROA 3NWAA 5C5BB 2J59M 3T06A 1NI2A 5KQ4A 2D11A 2N0YA 4HATB 4OSNA 1S0WC 4YONA 4ZRJA 1ZYIA 2RSGA 1FHXA 4DIXA 2ADZA 2EMSA 5HE1A 1MIZB 2KIEA 2G2UB 5D3YA 2BCJA 4GMXB 4A6FB 4D0NB 2KIGA 3HW2B 2K2JA 4GPTB 3SO6A 2MWNB 3M1IB 4L6EA 4XWXA 2EMTA 4IFSA 1RRPB 3HK0A 5LG4B 2DHJA 5L81A 3DCXA 3D4EA 5LOPB 3IVFA 5FI0A 5C79A 1OMWA 4Y94A 2OQBA 1X11A 2PZ1A 2P0HA 1T77A 3TFMA 2CY4A 3B77A 2YSZA 2HTHB 4DX8A 5JP4A 2Q13A 1BAKA 3MPXA 3ODWA 2HE7A 3TCAA 4Z2MB 1ZC3B 1P3RA 1PLSA 3SYXA 1U5EA 5D3WA 1UNRA 2KR0A 5KQ1A 2GUMA 2CODA 5JLJB 1WJMA 2YT2A 2LKOA 1DDMA 2L2IA 3HSAA 2PXGA 3VIAA 4HDOA 2ROVA 2GCLA 3ZVRA 1WJ1A 2D9XA 1W1GA 1DDVA 2MKRA 1UEFA 2I5CA 3FM8C 3O96A 1XODA 4GMVA 1BWNA 3KRXA 1TXDA 4DBBA 2W2WA 3CXBB 2D9YA 3OANA 3F0WA 3QBVB 2P8VA 2QKMA 4TYZA 4HAXB 2D9ZA 2NMBA 3C7UB 3PSCA 3PEGA 2DX5A 3V5WA 3U7DA 1FB8A 2Z0QA 2DTCA 4HAYB 1EAZA 4HAZB 2RNRB 1DBHA 2Y7BA 4TKNA 2G35A 1X05A 2EJ8A 1TQZA 4A5KA 2W2XC 1W1DA 3TVVA 4F7HA 3GMUB 2D9VA 1B55A 2NBVA 1WGQA 5J3QA 2KUQA 2CRFA 3ULBA 4IOYX 5C5BA 4WSFA 2J0JA 1GC7A 1AQCA 4H8SA 1GC6A 1NTVA 5I2MA 1X86A 1FAOA 1UNQA 3D8DA 5IRSA 1U5FA 1V61A 1V5PA 2X18A 1EGXA 4A6FA 2K00A 2DFKA 4MT7A 1N3HA 4QJ3B 1WG7A 4IAPA 1M7EA 4HAVB 1J19A 1FHWA 1MPHA 3GYPA 4KHAA 2LOZA 4C0AA 4Z2NA 1KZ7A 1AWEA 2AEHA 4HB3B 1FHOA 5DI9B 4MK0A 1XD4A 2Z14A 1OY2A 1WGUA 2VRWB 2YS1A 2D9WA 4B6HA 5CLLB 5GOWB 4PQ0A 2KXXA 3DXCA 2B5RC 1P5TA 1XXMC 4DXAB 3DXDA 3WA0A 1X1GA 2J0KA 2COFA 2GCJA 5DHFB 5C6RA 2ELBA 4HB4B 2P0DA 2E2XA 2K8EA 3KSYA 3NWFA 2YF0A 1K5GB 2DKQA 2R2YA 3U12A 2W2XD 2D4QA 1V89A 4CHMA 1NTYA 3PP2A 4KAXB 1Q67A 4KHBB 2H7EA 1XR0B 4D6WA 4KHOA 1U5DA 3P7ZA 5HE2A 3AU5A 1H4RA 2DYNA 1Z87A 1H10A 1LW3A 2DYQA 4HHVA 1V88A 1DDWA 3RCPA 2ZPYA 2M14A 2RVBB 3AJ4A 3NWDA 4ZRKA 2GJYA 2LOXA 4QJ5B 2QKLA 3G9WA 1I7AA 2R0DA 1MK9B 5D27A 1PMSA 5HE0A 5LONB 2MDXA 3X23A 1MKEA 2DLWA 2H7DA 4KVGB 4CHJA 4NY0A 4F7UP 3PVUA 2RLOA 4CYEA 2J0MA 4HB2B 2Z0OA 1U27A 1UPQA 3SNHA 2LYDA 4YL8A 1KZGA 1Y19B 2V76A 3QIJA 4HSIA 3LJUX 3PZDA 2LULA 4GN1A 1I2HA 2CAYA 2LG1A 2ROZB 1EVHA 2K49A 3D8EA 2FJLA 4K81A 2COAA 3KRWA 3CIKA 4NSWA 4A6KA 4EKUA 2ELAA 1QC6A 2K2UA 3TW1A 3P6AA 2Z0PA 1BTKA 2M38A 2Z4DA 1M7RA 3N4IB 5EFXA 3AU4A 2DHIA 2NZ8B 2XQNM 3KZ1A 1FGZA 3ULCA 3WYFB 2FJUB 3SUZA 3UZTA 5I2SA 3KY9A 1PFJA 2Z59A 1QQGA 2DKPA 2KGXB 2Y8GA 1WI1A 3FEHA 3E2KC 2I5FA 4MY6A 1U29A 2YT0A 4DX90 1ZM0A 2DX1A 4GZUA 4HDQA 4GNKB 2R09A 4QXAB 3U8ZA 2YH9A 3OHMB 1UPRA 2YS3A 2N23A 3FSSA 2GS0A 3VOQA 1U5GA 2D10A 2KUPA 4BBKA 4EMOA 2OTXA 1XKEA 1DYNA 1RJ2A 4EJNA 4QJ4B 3A98B 4L1RA 5EKQE 2Z13A 2I1JA 3QWMA 5JHGA 2L1CA 1TJ6A 5C16A 2YS5A 2CY5A 4ZRIA 1Y5OA 1ZC4B 3BJIA 3NSUA 3ZDTA 4WVFB 2P0FA 5DH9B 2DA0A 2RRFA 3PVWA 2G2WB 5HE3A 1EF1A 2UVMA 2Y8FA 1UNPA
chains in the Genus database with same CATH topology
3E2LC 5D0QE 5AYWE 2KIEA 3HIEA 3NWDA 2G2UB 3C7VB 2KIGA 4QJ5B 3TVVA 3GMUB 2NBVA 4KHBA 5D0OE 2KUQA 4DM5A 4IFSA 4IOYX 5LG4B 3D4EA 5I2MA 5IRSA 3NW8A 3GYOA 4HSIA 4CSQA 4Z2MB 4QJ3B 2K49A 3TO1A 5M4YB 2KR0A 2GUMA 1JTGB 2YT2A 3GYPA 3TW1A 4KHAA 4OT1A 2PXGA 2Z4DA 4Z2NA 3N4IB 2ZKMX 3C4PB 2GCLA 2Z14A 2FJUB 5I2SA 4PQ0A 2KXXA 2Z59A 2B5RC 3E2KC 1XXMC 3FVCA 2GCJA 3A58A 4GNKB 4QXAB 2YH9A 3OHMB 4GOUA 3FSSA 3C4OB 2K8EA 3NWFA 2R2YA 3U12A 2KM7A 4QJ4B 4L1RA 5EKQE 2Z13A 4KHBB 4D6WA 4KHOA 3C7UB 3NWAA 2RRFA 4OSNA 2G2WB 1S0WC 1ZYIA 4DIXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OSN A;  4HSI A;  3NWF A;  3FVC A;  3NWD A;  4OT1 A;  3NW8 A;  2GUM A;  4L1R A;  3NWA A; 
#chains in the Genus database with same CATH topology
 3E2L C;  5D0Q E;  5AYW E;  1MK7 B;  3HIE A;  2RUK B;  3C7V B;  2RGN B;  4HAU B;  5J3T A;  4WJ7 A;  5J3Y A;  1XX0 A;  4KHB A;  5D0O E;  1BTN A;  3ODX A;  1FGY A;  2UZS A;  4A6H A;  4DM5 A;  1OQN A;  5D3V A;  2DN6 A;  2YRY A;  1WVH A;  2EC1 A;  3F5R A;  1E5W A;  1IRS A;  1SGH A;  3A8P A;  1MIX A;  1J0W A;  4PNK A;  2UZR A;  4P7I A;  5KCV A;  3NW8 A;  3GYO A;  2IYB A;  2COC A;  2YVC A;  4CSQ A;  2YT1 A;  1NU2 A;  1SHC A;  5FI1 A;  3ML4 A;  3TO1 A;  5M4Y B;  5D3X A;  1XCG A;  3ODO A;  1KI1 B;  1JTG B;  3HQC A;  4OT1 A;  1ZSQ A;  1ZVR A;  3N7C A;  4K2P A;  1MAI A;  1GG3 A;  4F7G A;  1U2B A;  4HAW B;  2I1K A;  2ZKM X;  3PVL A;  3C4P B;  1MI1 A;  3DXE A;  1ISN A;  1K5D B;  5CLQ B;  1V5U A;  2KCJ A;  3PG7 A;  1V5M A;  1W1H A;  3FVC A;  4K2O A;  4HB0 B;  4GXB A;  3A58 A;  3BIN A;  3D8F A;  1P6S A;  4GOU A;  2IFS A;  2MFQ A;  3C4O B;  5DHA B;  1FOE A;  2VSZ A;  2JP2 A;  4K17 A;  1LB1 A;  1X1F A;  5JHH A;  2KM7 A;  3A8Q A;  3MDB C;  2DHK A;  2D2Q A;  5DIF B;  3SV1 A;  2AL6 A;  2VKI A;  1DRO A;  3NWA A;  5C5B B;  2J59 M;  3T06 A;  1NI2 A;  5KQ4 A;  2D11 A;  2N0Y A;  4HAT B;  4OSN A;  1S0W C;  4YON A;  4ZRJ A;  1ZYI A;  2RSG A;  1FHX A;  4DIX A;  2ADZ A;  2EMS A;  5HE1 A;  1MIZ B;  2KIE A;  2G2U B;  5D3Y A;  2BCJ A;  4GMX B;  4A6F B;  4D0N B;  2KIG A;  3HW2 B;  2K2J A;  4GPT B;  3SO6 A;  2MWN B;  3M1I B;  4L6E A;  4XWX A;  2EMT A;  4IFS A;  1RRP B;  3HK0 A;  5LG4 B;  2DHJ A;  5L81 A;  3DCX A;  3D4E A;  5LOP B;  3IVF A;  5FI0 A;  5C79 A;  1OMW A;  4Y94 A;  2OQB A;  1X11 A;  2PZ1 A;  2P0H A;  1T77 A;  3TFM A;  2CY4 A;  3B77 A;  2YSZ A;  2HTH B;  4DX8 A;  5JP4 A;  2Q13 A;  1BAK A;  3MPX A;  3ODW A;  2HE7 A;  3TCA A;  4Z2M B;  1ZC3 B;  1P3R A;  1PLS A;  3SYX A;  1U5E A;  5D3W A;  1UNR A;  2KR0 A;  5KQ1 A;  2GUM A;  2COD A;  5JLJ B;  1WJM A;  2YT2 A;  2LKO A;  1DDM A;  2L2I A;  3HSA A;  2PXG A;  3VIA A;  4HDO A;  2ROV A;  2GCL A;  3ZVR A;  1WJ1 A;  2D9X A;  1W1G A;  1DDV A;  2MKR A;  1UEF A;  2I5C A;  3FM8 C;  3O96 A;  1XOD A;  4GMV A;  1BWN A;  3KRX A;  1TXD A;  4DBB A;  2W2W A;  3CXB B;  2D9Y A;  3OAN A;  3F0W A;  3QBV B;  2P8V A;  2QKM A;  4TYZ A;  4HAX B;  2D9Z A;  2NMB A;  3C7U B;  3PSC A;  3PEG A;  2DX5 A;  3V5W A;  3U7D A;  1FB8 A;  2Z0Q A;  2DTC A;  4HAY B;  1EAZ A;  4HAZ B;  2RNR B;  1DBH A;  2Y7B A;  4TKN A;  2G35 A;  1X05 A;  2EJ8 A;  1TQZ A;  4A5K A;  2W2X C;  1W1D A;  3TVV A;  4F7H A;  3GMU B;  2D9V A;  1B55 A;  2NBV A;  1WGQ A;  5J3Q A;  2KUQ A;  2CRF A;  3ULB A;  4IOY X;  5C5B A;  4WSF A;  2J0J A;  1GC7 A;  1AQC A;  4H8S A;  1GC6 A;  1NTV A;  5I2M A;  1X86 A;  1FAO A;  1UNQ A;  3D8D A;  5IRS A;  1U5F A;  1V61 A;  1V5P A;  2X18 A;  1EGX A;  4A6F A;  2K00 A;  2DFK A;  4MT7 A;  1N3H A;  4QJ3 B;  1WG7 A;  4IAP A;  1M7E A;  4HAV B;  1J19 A;  1FHW A;  1MPH A;  3GYP A;  4KHA A;  2LOZ A;  4C0A A;  4Z2N A;  1KZ7 A;  1AWE A;  2AEH A;  4HB3 B;  1FHO A;  5DI9 B;  4MK0 A;  1XD4 A;  2Z14 A;  1OY2 A;  1WGU A;  2VRW B;  2YS1 A;  2D9W A;  4B6H A;  5CLL B;  5GOW B;  4PQ0 A;  2KXX A;  3DXC A;  2B5R C;  1P5T A;  1XXM C;  4DXA B;  3DXD A;  3WA0 A;  1X1G A;  2J0K A;  2COF A;  2GCJ A;  5DHF B;  5C6R A;  2ELB A;  4HB4 B;  2P0D A;  2E2X A;  2K8E A;  3KSY A;  3NWF A;  2YF0 A;  1K5G B;  2DKQ A;  2R2Y A;  3U12 A;  2W2X D;  2D4Q A;  1V89 A;  4CHM A;  1NTY A;  3PP2 A;  4KAX B;  1Q67 A;  4KHB B;  2H7E A;  1XR0 B;  4D6W A;  4KHO A;  1U5D A;  3P7Z A;  5HE2 A;  3AU5 A;  1H4R A;  2DYN A;  1Z87 A;  1H10 A;  1LW3 A;  2DYQ A;  4HHV A;  1V88 A;  1DDW A;  3RCP A;  2ZPY A;  2M14 A;  2RVB B;  3AJ4 A;  3NWD A;  4ZRK A;  2GJY A;  2LOX A;  4QJ5 B;  2QKL A;  3G9W A;  1I7A A;  2R0D A;  1MK9 B;  5D27 A;  1PMS A;  5HE0 A;  5LON B;  2MDX A;  3X23 A;  1MKE A;  2DLW A;  2H7D A;  4KVG B;  4CHJ A;  4NY0 A;  4F7U P;  3PVU A;  2RLO A;  4CYE A;  2J0M A;  4HB2 B;  2Z0O A;  1U27 A;  1UPQ A;  3SNH A;  2LYD A;  4YL8 A;  1KZG A;  1Y19 B;  2V76 A;  3QIJ A;  4HSI A;  3LJU X;  3PZD A;  2LUL A;  4GN1 A;  1I2H A;  2CAY A;  2LG1 A;  2ROZ B;  1EVH A;  2K49 A;  3D8E A;  2FJL A;  4K81 A;  2COA A;  3KRW A;  3CIK A;  4NSW A;  4A6K A;  4EKU A;  2ELA A;  1QC6 A;  2K2U A;  3TW1 A;  3P6A A;  2Z0P A;  1BTK A;  2M38 A;  2Z4D A;  1M7R A;  3N4I B;  5EFX A;  3AU4 A;  2DHI A;  2NZ8 B;  2XQN M;  3KZ1 A;  1FGZ A;  3ULC A;  3WYF B;  2FJU B;  3SUZ A;  3UZT A;  5I2S A;  3KY9 A;  1PFJ A;  2Z59 A;  1QQG A;  2DKP A;  2KGX B;  2Y8G A;  1WI1 A;  3FEH A;  3E2K C;  2I5F A;  4MY6 A;  1U29 A;  2YT0 A;  4DX9 0;  1ZM0 A;  2DX1 A;  4GZU A;  4HDQ A;  4GNK B;  2R09 A;  4QXA B;  3U8Z A;  2YH9 A;  3OHM B;  1UPR A;  2YS3 A;  2N23 A;  3FSS A;  2GS0 A;  3VOQ A;  1U5G A;  2D10 A;  2KUP A;  4BBK A;  4EMO A;  2OTX A;  1XKE A;  1DYN A;  1RJ2 A;  4EJN A;  4QJ4 B;  3A98 B;  4L1R A;  5EKQ E;  2Z13 A;  2I1J A;  3QWM A;  5JHG A;  2L1C A;  1TJ6 A;  5C16 A;  2YS5 A;  2CY5 A;  4ZRI A;  1Y5O A;  1ZC4 B;  3BJI A;  3NSU A;  3ZDT A;  4WVF B;  2P0F A;  5DH9 B;  2DA0 A;  2RRF A;  3PVW A;  2G2W B;  5HE3 A;  1EF1 A;  2UVM A;  2Y8F A;  1UNP A; 
#chains in the Genus database with same CATH homology
 3E2L C;  5D0Q E;  5AYW E;  2KIE A;  3HIE A;  3NWD A;  2G2U B;  3C7V B;  2KIG A;  4QJ5 B;  3TVV A;  3GMU B;  2NBV A;  4KHB A;  5D0O E;  2KUQ A;  4DM5 A;  4IFS A;  4IOY X;  5LG4 B;  3D4E A;  5I2M A;  5IRS A;  3NW8 A;  3GYO A;  4HSI A;  4CSQ A;  4Z2M B;  4QJ3 B;  2K49 A;  3TO1 A;  5M4Y B;  2KR0 A;  2GUM A;  1JTG B;  2YT2 A;  3GYP A;  3TW1 A;  4KHA A;  4OT1 A;  2PXG A;  2Z4D A;  4Z2N A;  3N4I B;  2ZKM X;  3C4P B;  2GCL A;  2Z14 A;  2FJU B;  5I2S A;  4PQ0 A;  2KXX A;  2Z59 A;  2B5R C;  3E2K C;  1XXM C;  3FVC A;  2GCJ A;  3A58 A;  4GNK B;  4QXA B;  2YH9 A;  3OHM B;  4GOU A;  3FSS A;  3C4O B;  2K8E A;  3NWF A;  2R2Y A;  3U12 A;  2KM7 A;  4QJ4 B;  4L1R A;  5EKQ E;  2Z13 A;  4KHB B;  4D6W A;  4KHO A;  3C7U B;  3NWA A;  2RRF A;  4OSN A;  2G2W B;  1S0W C;  1ZYI A;  4DIX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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