3C4OB

Crystal structure of the shv-1 beta-lactamase/beta-lactamase inhibitor protein (blip) e73m/s130k/s146m complex
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
165
structure length
165
Chain Sequence
AGVMTGAKFTQIQFGMTRQQVLDIAGAENCETGGSFGDSIHCRGHAAGDYYAYATFGFTSAAADAKVDSKSQMKLLAPSAPTLTLAKFNQVTVGMTRAQVLATVGQGSCTTWSEYYPAYPSTAGVTLSLKCFDVDGYSSTGFYRGMAHLWFTDGVLQGKRQWDLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Beta-lactamase SHV-1
publication title Computational redesign of the SHV-1 beta-lactamase/beta-lactamase inhibitor protein interface.
pubmed doi rcsb
source organism Klebsiella pneumoniae
molecule tags Hydrolase/hydrolase inhibitor
total genus 49
structure length 165
sequence length 165
ec nomenclature
pdb deposition date 2008-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07467 BLIP Beta-lactamase inhibitor (BLIP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 3c4oB01
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 3c4oB02
2G2WB 2YH9A 3C4PB 3N4IB 1S0WC 3E2KC 5D0OE 2KXXA 3C7UB 5AYWE 2G2UB 3C7VB 5EKQE 1JTGB 3D4EA 2B5RC 1XXMC 3C4OB 2KM7A 2PXGA 3GMUB 4DM5A 3E2LC 5D0QE
chains in the Genus database with same CATH superfamily
2G2WB 2YH9A 3C4PB 3N4IB 3NWAA 2GUMA 1S0WC 3E2KC 5D0OE 2KXXA 3C7UB 5AYWE 4L1RA 3NWFA 2G2UB 3C7VB 5EKQE 1JTGB 4HSIA 3NWDA 3D4EA 2B5RC 1XXMC 3C4OB 2KM7A 2PXGA 3FVCA 3NW8A 3GMUB 4DM5A 3E2LC 5D0QE
chains in the Genus database with same CATH topology
2G2WB 2YH9A 3C4PB 3N4IB 3NWAA 2GUMA 1S0WC 3E2KC 5D0OE 2KXXA 3C7UB 5AYWE 4L1RA 3NWFA 2G2UB 3C7VB 5EKQE 1JTGB 4HSIA 3NWDA 3D4EA 2B5RC 1XXMC 3C4OB 2KM7A 2PXGA 3FVCA 3NW8A 3GMUB 4DM5A 3E2LC 5D0QE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G2W B;  2YH9 A;  3C4P B;  3N4I B;  1S0W C;  3E2K C;  5D0O E;  2KXX A;  3C7U B;  5AYW E;  2G2U B;  3C7V B;  5EKQ E;  1JTG B;  3D4E A;  2B5R C;  1XXM C;  3C4O B;  2KM7 A;  2PXG A;  3GMU B;  4DM5 A;  3E2L C;  5D0Q E; 
#chains in the Genus database with same CATH topology
 2G2W B;  2YH9 A;  3C4P B;  3N4I B;  3NWA A;  2GUM A;  1S0W C;  3E2K C;  5D0O E;  2KXX A;  3C7U B;  5AYW E;  4L1R A;  3NWF A;  2G2U B;  3C7V B;  5EKQ E;  1JTG B;  4HSI A;  3NWD A;  3D4E A;  2B5R C;  1XXM C;  3C4O B;  2KM7 A;  2PXG A;  3FVC A;  3NW8 A;  3GMU B;  4DM5 A;  3E2L C;  5D0Q E; 
#chains in the Genus database with same CATH homology
 2G2W B;  2YH9 A;  3C4P B;  3N4I B;  3NWA A;  2GUM A;  1S0W C;  3E2K C;  5D0O E;  2KXX A;  3C7U B;  5AYW E;  4L1R A;  3NWF A;  2G2U B;  3C7V B;  5EKQ E;  1JTG B;  4HSI A;  3NWD A;  3D4E A;  2B5R C;  1XXM C;  3C4O B;  2KM7 A;  2PXG A;  3FVC A;  3NW8 A;  3GMU B;  4DM5 A;  3E2L C;  5D0Q E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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