1YCOA

Crystal structure of a branched-chain phosphotransacylase from enterococcus faecalis v583
Total Genus 88

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
276
structure length
276
Chain Sequence
MITVSIAGGSQPEILQLVKKALKEAEQPLQFIVFDTNENLDTENLWKYVHCSDEAAVAQEAVSLVATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFLLTDCAMNIAPTQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFNDQQEATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGHAKVGGTIVGTKVPVVLTSRSDSTESKFHSLRFAMRQVHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-7)TVIII1 (68-71)AH2 (54-66)TIV4 (75-78)TIV1 (6-9)O1 (9-11)S2 (29-35)AH1 (12-24)TI2 (254-257)AH9 (259-274)TIV2 (41-44)TIV3 (67-70)S4 (72-75)TVIII5 (246-249)3H1 (90-92)TIV7 (122-125)TVIII2 (97-100)AH4 (127-144)S5 (101-107)TIV6 (118-121)TIV5 (108-111)S6 (113-117)TVIII4 (213-216)AH8 (221-235)TIV8 (146-149)S7 (150-154)TIV11 (209-212)AH5 (165-177)S8 (184-189)TIV9 (157-160)AH6 (191-195)TVIII3 (207-210)S10 (238-244)S11 (250-252)S9 (215-217)TI1 (161-164)TIV10 (177-180)AH3 (80-88)AH7 (197-203)S3 (47-50)Updating...
connected with : NaN
molecule tags Transferase
source organism Enterococcus faecalis
publication title Crystal structure of a branched-chain phosphotransacylase from Enterococcus faecalis V583
rcsb
molecule keywords branched-chain phosphotransacylase
total genus 88
structure length 276
sequence length 276
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01515 PTA_PTB Phosphate acetyl/butaryl transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 1ycoA00
3VL4A 8ICDA 3DMSA 1BL5A 4L06A 5I96A 3INMA 1IKAA 4JA8A 1IPDA 3MASA 4KZOA 5HN3A 3MAPA 3BLXB 2IV0A 2Y40A 4AJRA 4XXVA 1ZORA 5GRLB 9ICDA 3VMKA 1LWDA 4UMYA 5GRLA 4L03A 3TY3A 1IDEA 1U7NA 1IDMA 2Y3ZA 5GRIA 2D1CA 3UDUA 5ICDA 1SJSA 2QFXA 1ISOA 1V53A 3ASJA 5GRFB 2AYQA 5GREA 1CW7A 1WPWA 4XS3A 5DE1A 1HEXA 3WZXA 1WALA 4AOYA 2UXRA 1OSIA 5HN4A 4AJ3A 1IDCA 4AJCA 3U9EA 4AOVA 1PB3A 3FLKA 1VLCA 4AJBA 1DR8A 3BLXA 3VL2A 1P8FA 1XAAA 1OSJA 2E5MA 4AOUA 1DPZA 1PTMA 1A05A 3VL7A 1PB1A 7ICDA 3BLVB 1V5BA 2D4VA 5GRHB 4P69C 2QFVA 2Y42A 3TSNA 4YB4A 1IDFA 1V94A 3VMLA 1G2UA 1PS6A 4L04A 1W0DA 5K10A 3WZVA 1AI3A 5HN5A 4AJAA 3AH3A 3VKZA 3FMXX 2G4OA 5GRFA 4I3LA 2Y41A 1X0LA 1HQSA 1YCOA 5HN6A 4WUOA 3UDOA 2DHTA 4IWHA 5J34A 4UMXA 1IDDA 1XKDA 2UXQA 5LGEA 4F7IA 5L58A 5J32A 2ZTWA 1XACA 1CW1A 3UF6A 4HCXA 2QFWA 3MASB 5I95A 3LCBC 5K11A 1GRPA 1T09A 1GC9A 4XRXA 1PS7A 5L57A 4JQPA 1GC8A 3LXYA 4ATYA 1T0LA 3BLVA 1CNZA 1DR0A 4AJSA 3U1HA 5GRHA 1HJ6A 3WZYA 4Y1PA 3TNGA 6ICDA 3VMJA 5J33A 1R8KA 1XABA 3MARA 1CW4A 1GROA 2HI1A 1TYOA 1VI1A 2E0CA 1XGVA 2QFYA 3ICDA 3R8WA 3US8A 1AI2A 4I3KA 4BNPA 5GRIB 3TY4A 1YXOA 4ICDA 1CM7A 3VL3A 3VL6A 5GREB 3WZWA 1XADA
chains in the Genus database with same CATH superfamily
3VL4A 8ICDA 3DMSA 1BL5A 4L06A 5I96A 3INMA 1IKAA 4JA8A 1IPDA 3MASA 4KZOA 5HN3A 3MAPA 3BLXB 2IV0A 2Y40A 4AJRA 4XXVA 1ZORA 5GRLB 9ICDA 3VMKA 1LWDA 4UMYA 5GRLA 4L03A 3TY3A 1IDEA 1U7NA 1IDMA 2Y3ZA 5GRIA 2D1CA 3UDUA 5ICDA 1SJSA 2QFXA 1ISOA 1V53A 3ASJA 5GRFB 2AYQA 5GREA 1CW7A 1WPWA 4XS3A 5DE1A 1HEXA 3WZXA 1WALA 4AOYA 2UXRA 1OSIA 5HN4A 4AJ3A 1IDCA 4AJCA 3U9EA 4AOVA 1PB3A 3FLKA 1VLCA 4AJBA 1DR8A 3BLXA 3VL2A 1P8FA 1XAAA 1OSJA 2E5MA 4AOUA 1DPZA 1PTMA 1A05A 3VL7A 1PB1A 7ICDA 3BLVB 1V5BA 2D4VA 5GRHB 4P69C 2QFVA 2Y42A 3TSNA 4YB4A 1IDFA 1V94A 3VMLA 1G2UA 1PS6A 4L04A 1W0DA 5K10A 3WZVA 1AI3A 5HN5A 4AJAA 3AH3A 3VKZA 3FMXX 2G4OA 5GRFA 4I3LA 2Y41A 1X0LA 1HQSA 1YCOA 5HN6A 4WUOA 3UDOA 2DHTA 4IWHA 5J34A 4UMXA 1IDDA 1XKDA 2UXQA 5LGEA 4F7IA 5L58A 5J32A 2ZTWA 1XACA 1CW1A 3UF6A 4HCXA 2QFWA 3MASB 5I95A 3LCBC 5K11A 1GRPA 1T09A 1GC9A 4XRXA 1PS7A 5L57A 4JQPA 1GC8A 3LXYA 4ATYA 1T0LA 3BLVA 1CNZA 1DR0A 4AJSA 3U1HA 5GRHA 1HJ6A 3WZYA 4Y1PA 3TNGA 6ICDA 3VMJA 5J33A 1R8KA 1XABA 3MARA 1CW4A 1GROA 2HI1A 1TYOA 1VI1A 2E0CA 1XGVA 2QFYA 3ICDA 3R8WA 3US8A 1AI2A 4I3KA 4BNPA 5GRIB 3TY4A 1YXOA 4ICDA 1CM7A 3VL3A 3VL6A 5GREB 3WZWA 1XADA
chains in the Genus database with same CATH topology
3VL4A 8ICDA 3DMSA 1BL5A 4L06A 5I96A 3INMA 1IKAA 4JA8A 1IPDA 3MASA 4KZOA 5HN3A 3MAPA 3BLXB 2IV0A 2Y40A 4AJRA 4XXVA 1ZORA 5GRLB 9ICDA 3VMKA 1LWDA 4UMYA 5GRLA 4L03A 3TY3A 1IDEA 1U7NA 1IDMA 2Y3ZA 5GRIA 2D1CA 3UDUA 5ICDA 1SJSA 2QFXA 1ISOA 1V53A 3ASJA 5GRFB 2AYQA 5GREA 1CW7A 1WPWA 4XS3A 5DE1A 1HEXA 3WZXA 1WALA 4AOYA 2UXRA 1OSIA 5HN4A 4AJ3A 1IDCA 4AJCA 3U9EA 4AOVA 1PB3A 3FLKA 1VLCA 4AJBA 1DR8A 3BLXA 3VL2A 1P8FA 1XAAA 1OSJA 2E5MA 4AOUA 1DPZA 1PTMA 1A05A 3VL7A 1PB1A 7ICDA 3BLVB 1V5BA 2D4VA 5GRHB 4P69C 2QFVA 2Y42A 3TSNA 4YB4A 1IDFA 1V94A 3VMLA 1G2UA 1PS6A 4L04A 1W0DA 5K10A 3WZVA 1AI3A 5HN5A 4AJAA 3AH3A 3VKZA 3FMXX 2G4OA 5GRFA 4I3LA 2Y41A 1X0LA 1HQSA 1YCOA 5HN6A 4WUOA 3UDOA 2DHTA 4IWHA 5J34A 4UMXA 1IDDA 1XKDA 2UXQA 5LGEA 4F7IA 5L58A 5J32A 2ZTWA 1XACA 1CW1A 3UF6A 4HCXA 2QFWA 3MASB 5I95A 3LCBC 5K11A 1GRPA 1T09A 1GC9A 4XRXA 1PS7A 5L57A 4JQPA 1GC8A 3LXYA 4ATYA 1T0LA 3BLVA 1CNZA 1DR0A 4AJSA 3U1HA 5GRHA 1HJ6A 3WZYA 4Y1PA 3TNGA 6ICDA 3VMJA 5J33A 1R8KA 1XABA 3MARA 1CW4A 1GROA 2HI1A 1TYOA 1VI1A 2E0CA 1XGVA 2QFYA 3ICDA 3R8WA 3US8A 1AI2A 4I3KA 4BNPA 5GRIB 3TY4A 1YXOA 4ICDA 1CM7A 3VL3A 3VL6A 5GREB 3WZWA 1XADA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VL4 A;  8ICD A;  3DMS A;  1BL5 A;  4L06 A;  5I96 A;  3INM A;  1IKA A;  4JA8 A;  1IPD A;  3MAS A;  4KZO A;  5HN3 A;  3MAP A;  3BLX B;  2IV0 A;  2Y40 A;  4AJR A;  4XXV A;  1ZOR A;  5GRL B;  9ICD A;  3VMK A;  1LWD A;  4UMY A;  5GRL A;  4L03 A;  3TY3 A;  1IDE A;  1U7N A;  1IDM A;  2Y3Z A;  5GRI A;  2D1C A;  3UDU A;  5ICD A;  1SJS A;  2QFX A;  1ISO A;  1V53 A;  3ASJ A;  5GRF B;  2AYQ A;  5GRE A;  1CW7 A;  1WPW A;  4XS3 A;  5DE1 A;  1HEX A;  3WZX A;  1WAL A;  4AOY A;  2UXR A;  1OSI A;  5HN4 A;  4AJ3 A;  1IDC A;  4AJC A;  3U9E A;  4AOV A;  1PB3 A;  3FLK A;  1VLC A;  4AJB A;  1DR8 A;  3BLX A;  3VL2 A;  1P8F A;  1XAA A;  1OSJ A;  2E5M A;  4AOU A;  1DPZ A;  1PTM A;  1A05 A;  3VL7 A;  1PB1 A;  7ICD A;  3BLV B;  1V5B A;  2D4V A;  5GRH B;  4P69 C;  2QFV A;  2Y42 A;  3TSN A;  4YB4 A;  1IDF A;  1V94 A;  3VML A;  1G2U A;  1PS6 A;  4L04 A;  1W0D A;  5K10 A;  3WZV A;  1AI3 A;  5HN5 A;  4AJA A;  3AH3 A;  3VKZ A;  3FMX X;  2G4O A;  5GRF A;  4I3L A;  2Y41 A;  1X0L A;  1HQS A;  1YCO A;  5HN6 A;  4WUO A;  3UDO A;  2DHT A;  4IWH A;  5J34 A;  4UMX A;  1IDD A;  1XKD A;  2UXQ A;  5LGE A;  4F7I A;  5L58 A;  5J32 A;  2ZTW A;  1XAC A;  1CW1 A;  3UF6 A;  4HCX A;  2QFW A;  3MAS B;  5I95 A;  3LCB C;  5K11 A;  1GRP A;  1T09 A;  1GC9 A;  4XRX A;  1PS7 A;  5L57 A;  4JQP A;  1GC8 A;  3LXY A;  4ATY A;  1T0L A;  3BLV A;  1CNZ A;  1DR0 A;  4AJS A;  3U1H A;  5GRH A;  1HJ6 A;  3WZY A;  4Y1P A;  3TNG A;  6ICD A;  3VMJ A;  5J33 A;  1R8K A;  1XAB A;  3MAR A;  1CW4 A;  1GRO A;  2HI1 A;  1TYO A;  1VI1 A;  2E0C A;  1XGV A;  2QFY A;  3ICD A;  3R8W A;  3US8 A;  1AI2 A;  4I3K A;  4BNP A;  5GRI B;  3TY4 A;  1YXO A;  4ICD A;  1CM7 A;  3VL3 A;  3VL6 A;  5GRE B;  3WZW A;  1XAD A; 
#chains in the Genus database with same CATH topology
 3VL4 A;  8ICD A;  3DMS A;  1BL5 A;  4L06 A;  5I96 A;  3INM A;  1IKA A;  4JA8 A;  1IPD A;  3MAS A;  4KZO A;  5HN3 A;  3MAP A;  3BLX B;  2IV0 A;  2Y40 A;  4AJR A;  4XXV A;  1ZOR A;  5GRL B;  9ICD A;  3VMK A;  1LWD A;  4UMY A;  5GRL A;  4L03 A;  3TY3 A;  1IDE A;  1U7N A;  1IDM A;  2Y3Z A;  5GRI A;  2D1C A;  3UDU A;  5ICD A;  1SJS A;  2QFX A;  1ISO A;  1V53 A;  3ASJ A;  5GRF B;  2AYQ A;  5GRE A;  1CW7 A;  1WPW A;  4XS3 A;  5DE1 A;  1HEX A;  3WZX A;  1WAL A;  4AOY A;  2UXR A;  1OSI A;  5HN4 A;  4AJ3 A;  1IDC A;  4AJC A;  3U9E A;  4AOV A;  1PB3 A;  3FLK A;  1VLC A;  4AJB A;  1DR8 A;  3BLX A;  3VL2 A;  1P8F A;  1XAA A;  1OSJ A;  2E5M A;  4AOU A;  1DPZ A;  1PTM A;  1A05 A;  3VL7 A;  1PB1 A;  7ICD A;  3BLV B;  1V5B A;  2D4V A;  5GRH B;  4P69 C;  2QFV A;  2Y42 A;  3TSN A;  4YB4 A;  1IDF A;  1V94 A;  3VML A;  1G2U A;  1PS6 A;  4L04 A;  1W0D A;  5K10 A;  3WZV A;  1AI3 A;  5HN5 A;  4AJA A;  3AH3 A;  3VKZ A;  3FMX X;  2G4O A;  5GRF A;  4I3L A;  2Y41 A;  1X0L A;  1HQS A;  1YCO A;  5HN6 A;  4WUO A;  3UDO A;  2DHT A;  4IWH A;  5J34 A;  4UMX A;  1IDD A;  1XKD A;  2UXQ A;  5LGE A;  4F7I A;  5L58 A;  5J32 A;  2ZTW A;  1XAC A;  1CW1 A;  3UF6 A;  4HCX A;  2QFW A;  3MAS B;  5I95 A;  3LCB C;  5K11 A;  1GRP A;  1T09 A;  1GC9 A;  4XRX A;  1PS7 A;  5L57 A;  4JQP A;  1GC8 A;  3LXY A;  4ATY A;  1T0L A;  3BLV A;  1CNZ A;  1DR0 A;  4AJS A;  3U1H A;  5GRH A;  1HJ6 A;  3WZY A;  4Y1P A;  3TNG A;  6ICD A;  3VMJ A;  5J33 A;  1R8K A;  1XAB A;  3MAR A;  1CW4 A;  1GRO A;  2HI1 A;  1TYO A;  1VI1 A;  2E0C A;  1XGV A;  2QFY A;  3ICD A;  3R8W A;  3US8 A;  1AI2 A;  4I3K A;  4BNP A;  5GRI B;  3TY4 A;  1YXO A;  4ICD A;  1CM7 A;  3VL3 A;  3VL6 A;  5GRE B;  3WZW A;  1XAD A; 
#chains in the Genus database with same CATH homology
 3VL4 A;  8ICD A;  3DMS A;  1BL5 A;  4L06 A;  5I96 A;  3INM A;  1IKA A;  4JA8 A;  1IPD A;  3MAS A;  4KZO A;  5HN3 A;  3MAP A;  3BLX B;  2IV0 A;  2Y40 A;  4AJR A;  4XXV A;  1ZOR A;  5GRL B;  9ICD A;  3VMK A;  1LWD A;  4UMY A;  5GRL A;  4L03 A;  3TY3 A;  1IDE A;  1U7N A;  1IDM A;  2Y3Z A;  5GRI A;  2D1C A;  3UDU A;  5ICD A;  1SJS A;  2QFX A;  1ISO A;  1V53 A;  3ASJ A;  5GRF B;  2AYQ A;  5GRE A;  1CW7 A;  1WPW A;  4XS3 A;  5DE1 A;  1HEX A;  3WZX A;  1WAL A;  4AOY A;  2UXR A;  1OSI A;  5HN4 A;  4AJ3 A;  1IDC A;  4AJC A;  3U9E A;  4AOV A;  1PB3 A;  3FLK A;  1VLC A;  4AJB A;  1DR8 A;  3BLX A;  3VL2 A;  1P8F A;  1XAA A;  1OSJ A;  2E5M A;  4AOU A;  1DPZ A;  1PTM A;  1A05 A;  3VL7 A;  1PB1 A;  7ICD A;  3BLV B;  1V5B A;  2D4V A;  5GRH B;  4P69 C;  2QFV A;  2Y42 A;  3TSN A;  4YB4 A;  1IDF A;  1V94 A;  3VML A;  1G2U A;  1PS6 A;  4L04 A;  1W0D A;  5K10 A;  3WZV A;  1AI3 A;  5HN5 A;  4AJA A;  3AH3 A;  3VKZ A;  3FMX X;  2G4O A;  5GRF A;  4I3L A;  2Y41 A;  1X0L A;  1HQS A;  1YCO A;  5HN6 A;  4WUO A;  3UDO A;  2DHT A;  4IWH A;  5J34 A;  4UMX A;  1IDD A;  1XKD A;  2UXQ A;  5LGE A;  4F7I A;  5L58 A;  5J32 A;  2ZTW A;  1XAC A;  1CW1 A;  3UF6 A;  4HCX A;  2QFW A;  3MAS B;  5I95 A;  3LCB C;  5K11 A;  1GRP A;  1T09 A;  1GC9 A;  4XRX A;  1PS7 A;  5L57 A;  4JQP A;  1GC8 A;  3LXY A;  4ATY A;  1T0L A;  3BLV A;  1CNZ A;  1DR0 A;  4AJS A;  3U1H A;  5GRH A;  1HJ6 A;  3WZY A;  4Y1P A;  3TNG A;  6ICD A;  3VMJ A;  5J33 A;  1R8K A;  1XAB A;  3MAR A;  1CW4 A;  1GRO A;  2HI1 A;  1TYO A;  1VI1 A;  2E0C A;  1XGV A;  2QFY A;  3ICD A;  3R8W A;  3US8 A;  1AI2 A;  4I3K A;  4BNP A;  5GRI B;  3TY4 A;  1YXO A;  4ICD A;  1CM7 A;  3VL3 A;  3VL6 A;  5GRE B;  3WZW A;  1XAD A; 
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