1YY6 | Genus

Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	143
structure length	137
Chain Sequence	TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 137 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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137 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Homo sapiens
publication title	Structure of the p53 binding domain of HAUSP/USP7 bound to Epstein-Barr nuclear antigen 1 implications for EBV-mediated immortalization. pubmed doi rcsb
molecule keywords	Ubiquitin carboxyl-terminal hydrolase 7
total genus	23
structure length	137
sequence length	143
ec nomenclature	ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date	2005-02-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00917	MATH	MATH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	1yy6A00

1ZMSA 1RF3A 3ZJBA 3HU6A 1F3VB 3HQIA 2A25A 4I7DA 1KZZA 2GKWA 3HQHA 1FLLA 5E1TA 1L0AA 2F1ZA 4JJQA 2F1WA 1CA9A 1CZYA 3IVQA 2F1XA 5H9MA 1D0JA 1D01A 1CA4A 2FOPA 4GWMA 1D00A 4Z8MA 1FLKA 4KG9A 4C9ZA 1CZZA 1YZEA 3IVVA 4GHUA 4CA1A 1QSCA 3HQLA 1LB6A 4I7BA 4M4EA 4I7CA 2F1YA 1D0AA 1YY6A 1LB5A 2XXNA 3MQSC 4GWNA 2CR2A 4YSIA 4O1VA 3MQRA 1K2FA 3HSVA 2AN6A 2FOJA 3IVBA 4X3GA 4GJHA 2FOOA 1LB4A 3HQMA 4K8UA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1ZMS A;  1RF3 A;  3ZJB A;  3HU6 A;  1F3V B;  3HQI A;  2A25 A;  4I7D A;  1KZZ A;  2GKW A;  3HQH A;  1FLL A;  5E1T A;  1L0A A;  2F1Z A;  4JJQ A;  2F1W A;  1CA9 A;  1CZY A;  3IVQ A;  2F1X A;  5H9M A;  1D0J A;  1D01 A;  1CA4 A;  2FOP A;  4GWM A;  1D00 A;  4Z8M A;  1FLK A;  4KG9 A;  4C9Z A;  1CZZ A;  1YZE A;  3IVV A;  4GHU A;  4CA1 A;  1QSC A;  3HQL A;  1LB6 A;  4I7B A;  4M4E A;  4I7C A;  2F1Y A;  1D0A A;  1YY6 A;  1LB5 A;  2XXN A;  3MQS C;  4GWN A;  2CR2 A;  4YSI A;  4O1V A;  3MQR A;  1K2F A;  3HSV A;  2AN6 A;  2FOJ A;  3IVB A;  4X3G A;  4GJH A;  2FOO A;  1LB4 A;  3HQM A;  4K8U A; 
#chains in the Genus database with same CATH topology
 1ZMS A;  1RF3 A;  3ZJB A;  3HU6 A;  1F3V B;  3HQI A;  2A25 A;  4I7D A;  1KZZ A;  2GKW A;  3HQH A;  1FLL A;  5E1T A;  1L0A A;  2F1Z A;  4JJQ A;  2F1W A;  1CA9 A;  1CZY A;  3IVQ A;  2F1X A;  5H9M A;  1D0J A;  1D01 A;  1CA4 A;  2FOP A;  4GWM A;  1D00 A;  4Z8M A;  1FLK A;  4KG9 A;  4C9Z A;  1CZZ A;  1YZE A;  3IVV A;  4GHU A;  4CA1 A;  1QSC A;  3HQL A;  1LB6 A;  4I7B A;  4M4E A;  4I7C A;  2F1Y A;  1D0A A;  1YY6 A;  1LB5 A;  2XXN A;  3MQS C;  4GWN A;  2CR2 A;  4YSI A;  4O1V A;  3MQR A;  1K2F A;  3HSV A;  2AN6 A;  2FOJ A;  3IVB A;  4X3G A;  4GJH A;  2FOO A;  1LB4 A;  3HQM A;  4K8U A; 
#chains in the Genus database with same CATH homology
 1ZMS A;  1RF3 A;  3ZJB A;  3HU6 A;  1F3V B;  3HQI A;  2A25 A;  4I7D A;  1KZZ A;  2GKW A;  3HQH A;  1FLL A;  5E1T A;  1L0A A;  2F1Z A;  4JJQ A;  2F1W A;  1CA9 A;  1CZY A;  3IVQ A;  2F1X A;  5H9M A;  1D0J A;  1D01 A;  1CA4 A;  2FOP A;  4GWM A;  1D00 A;  4Z8M A;  1FLK A;  4KG9 A;  4C9Z A;  1CZZ A;  1YZE A;  3IVV A;  4GHU A;  4CA1 A;  1QSC A;  3HQL A;  1LB6 A;  4I7B A;  4M4E A;  4I7C A;  2F1Y A;  1D0A A;  1YY6 A;  1LB5 A;  2XXN A;  3MQS C;  4GWN A;  2CR2 A;  4YSI A;  4O1V A;  3MQR A;  1K2F A;  3HSV A;  2AN6 A;  2FOJ A;  3IVB A;  4X3G A;  4GJH A;  2FOO A;  1LB4 A;  3HQM A;  4K8U A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1YY6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations