1YZEA

Crystal structure of the n-terminal domain of usp7/hausp.
Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
139
structure length
101
Chain Sequence
WRSEATFQFTVERFVLSPPCFVRNLPWKIMVMPRVGFFLQCNAESDSTSWSCHAQAVLKIIFSRRISHLFFHKENDWGFSNFMAWKVTFEVFVQADAPHGV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (75-78)S1 (68-75)TIV1 (91-94)S2 (90-92)S3 (95-102)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Homo sapiens
publication title Structure of the p53 binding domain of HAUSP/USP7 bound to Epstein-Barr nuclear antigen 1 implications for EBV-mediated immortalization.
pubmed doi rcsb
molecule keywords Ubiquitin carboxyl-terminal hydrolase 7
total genus 14
structure length 101
sequence length 139
chains with identical sequence B, C
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2005-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00917 MATH MATH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1yzeA00
4M4EA 2F1ZA 4GWNA 4GWMA 2FOOA 5H9MA 1FLKA 4Z8MA 3HSVA 2FOJA 1D00A 2GKWA 1RF3A 1D0JA 3HQMA 4KG9A 3HU6A 2AN6A 1CA4A 3MQSC 3IVBA 4I7DA 3IVVA 1QSCA 3IVQA 1CZYA 1LB4A 2FOPA 5E1TA 3HQHA 4K8UA 3ZJBA 4C9ZA 3MQRA 1FLLA 4CA1A 1K2FA 2A25A 1LB5A 2F1XA 4O1VA 4GJHA 4YSIA 4GHUA 1LB6A 1L0AA 1F3VB 1KZZA 1D0AA 1CZZA 1ZMSA 2F1WA 2F1YA 4I7CA 1D01A 1YZEA 4I7BA 1CA9A 3HQLA 4JJQA 4X3GA 2CR2A 2XXNA 1YY6A 3HQIA
chains in the Genus database with same CATH superfamily
4M4EA 2F1ZA 4GWNA 4GWMA 2FOOA 5H9MA 1FLKA 4Z8MA 3HSVA 2FOJA 1D00A 2GKWA 1RF3A 1D0JA 3HQMA 4KG9A 3HU6A 2AN6A 1CA4A 3MQSC 3IVBA 4I7DA 3IVVA 1QSCA 3IVQA 1CZYA 1LB4A 2FOPA 5E1TA 3HQHA 4K8UA 3ZJBA 4C9ZA 3MQRA 1FLLA 4CA1A 1K2FA 2A25A 1LB5A 2F1XA 4O1VA 4GJHA 4YSIA 4GHUA 1LB6A 1L0AA 1F3VB 1KZZA 1D0AA 1CZZA 1ZMSA 2F1WA 2F1YA 4I7CA 1D01A 1YZEA 4I7BA 1CA9A 3HQLA 4JJQA 4X3GA 2CR2A 2XXNA 1YY6A 3HQIA
chains in the Genus database with same CATH topology
4M4EA 2F1ZA 4GWNA 4GWMA 2FOOA 5H9MA 1FLKA 4Z8MA 3HSVA 2FOJA 1D00A 2GKWA 1RF3A 1D0JA 3HQMA 4KG9A 3HU6A 2AN6A 1CA4A 3MQSC 3IVBA 4I7DA 3IVVA 1QSCA 3IVQA 1CZYA 1LB4A 2FOPA 5E1TA 3HQHA 4K8UA 3ZJBA 4C9ZA 3MQRA 1FLLA 4CA1A 1K2FA 2A25A 1LB5A 2F1XA 4O1VA 4GJHA 4YSIA 4GHUA 1LB6A 1L0AA 1F3VB 1KZZA 1D0AA 1CZZA 1ZMSA 2F1WA 2F1YA 4I7CA 1D01A 1YZEA 4I7BA 1CA9A 3HQLA 4JJQA 4X3GA 2CR2A 2XXNA 1YY6A 3HQIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4M4E A;  2F1Z A;  4GWN A;  4GWM A;  2FOO A;  5H9M A;  1FLK A;  4Z8M A;  3HSV A;  2FOJ A;  1D00 A;  2GKW A;  1RF3 A;  1D0J A;  3HQM A;  4KG9 A;  3HU6 A;  2AN6 A;  1CA4 A;  3MQS C;  3IVB A;  4I7D A;  3IVV A;  1QSC A;  3IVQ A;  1CZY A;  1LB4 A;  2FOP A;  5E1T A;  3HQH A;  4K8U A;  3ZJB A;  4C9Z A;  3MQR A;  1FLL A;  4CA1 A;  1K2F A;  2A25 A;  1LB5 A;  2F1X A;  4O1V A;  4GJH A;  4YSI A;  4GHU A;  1LB6 A;  1L0A A;  1F3V B;  1KZZ A;  1D0A A;  1CZZ A;  1ZMS A;  2F1W A;  2F1Y A;  4I7C A;  1D01 A;  1YZE A;  4I7B A;  1CA9 A;  3HQL A;  4JJQ A;  4X3G A;  2CR2 A;  2XXN A;  1YY6 A;  3HQI A; 
#chains in the Genus database with same CATH topology
 4M4E A;  2F1Z A;  4GWN A;  4GWM A;  2FOO A;  5H9M A;  1FLK A;  4Z8M A;  3HSV A;  2FOJ A;  1D00 A;  2GKW A;  1RF3 A;  1D0J A;  3HQM A;  4KG9 A;  3HU6 A;  2AN6 A;  1CA4 A;  3MQS C;  3IVB A;  4I7D A;  3IVV A;  1QSC A;  3IVQ A;  1CZY A;  1LB4 A;  2FOP A;  5E1T A;  3HQH A;  4K8U A;  3ZJB A;  4C9Z A;  3MQR A;  1FLL A;  4CA1 A;  1K2F A;  2A25 A;  1LB5 A;  2F1X A;  4O1V A;  4GJH A;  4YSI A;  4GHU A;  1LB6 A;  1L0A A;  1F3V B;  1KZZ A;  1D0A A;  1CZZ A;  1ZMS A;  2F1W A;  2F1Y A;  4I7C A;  1D01 A;  1YZE A;  4I7B A;  1CA9 A;  3HQL A;  4JJQ A;  4X3G A;  2CR2 A;  2XXN A;  1YY6 A;  3HQI A; 
#chains in the Genus database with same CATH homology
 4M4E A;  2F1Z A;  4GWN A;  4GWM A;  2FOO A;  5H9M A;  1FLK A;  4Z8M A;  3HSV A;  2FOJ A;  1D00 A;  2GKW A;  1RF3 A;  1D0J A;  3HQM A;  4KG9 A;  3HU6 A;  2AN6 A;  1CA4 A;  3MQS C;  3IVB A;  4I7D A;  3IVV A;  1QSC A;  3IVQ A;  1CZY A;  1LB4 A;  2FOP A;  5E1T A;  3HQH A;  4K8U A;  3ZJB A;  4C9Z A;  3MQR A;  1FLL A;  4CA1 A;  1K2F A;  2A25 A;  1LB5 A;  2F1X A;  4O1V A;  4GJH A;  4YSI A;  4GHU A;  1LB6 A;  1L0A A;  1F3V B;  1KZZ A;  1D0A A;  1CZZ A;  1ZMS A;  2F1W A;  2F1Y A;  4I7C A;  1D01 A;  1YZE A;  4I7B A;  1CA9 A;  3HQL A;  4JJQ A;  4X3G A;  2CR2 A;  2XXN A;  1YY6 A;  3HQI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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