2CR2 | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	159
structure length	159
Chain Sequence	GSSGSSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 159 atoms

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159 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Immune system
source organism	Homo sapiens
publication title	Solution structure of N-terminal domain of speckle-type POZ protein rcsb
molecule keywords	Speckle-type POZ protein
total genus	16
structure length	159
sequence length	159
ec nomenclature
pdb deposition date	2005-05-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00917	MATH	MATH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	2cr2A01

4K8UA 4YSIA 4I7DA 1D00A 1D0JA 1CZZA 4JJQA 3ZJBA 4C9ZA 2FOOA 3HQMA 4GHUA 4O1VA 1LB4A 1K2FA 3MQSC 2A25A 1YY6A 2CR2A 1CZYA 3MQRA 1ZMSA 3HQIA 5E1TA 1FLKA 3HU6A 1YZEA 2F1YA 2F1ZA 3IVQA 1LB5A 1FLLA 4GWNA 3HQHA 1CA4A 3HQLA 1F3VB 1L0AA 1CA9A 2XXNA 1D0AA 4GWMA 1QSCA 3HSVA 4I7CA 3IVBA 4Z8MA 1RF3A 4X3GA 4CA1A 4M4EA 4GJHA 1KZZA 2AN6A 1D01A 4KG9A 2FOPA 5H9MA 3IVVA 4I7BA 2F1XA 1LB6A 2FOJA 2GKWA 2F1WA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4K8U A;  4YSI A;  4I7D A;  1D00 A;  1D0J A;  1CZZ A;  4JJQ A;  3ZJB A;  4C9Z A;  2FOO A;  3HQM A;  4GHU A;  4O1V A;  1LB4 A;  1K2F A;  3MQS C;  2A25 A;  1YY6 A;  2CR2 A;  1CZY A;  3MQR A;  1ZMS A;  3HQI A;  5E1T A;  1FLK A;  3HU6 A;  1YZE A;  2F1Y A;  2F1Z A;  3IVQ A;  1LB5 A;  1FLL A;  4GWN A;  3HQH A;  1CA4 A;  3HQL A;  1F3V B;  1L0A A;  1CA9 A;  2XXN A;  1D0A A;  4GWM A;  1QSC A;  3HSV A;  4I7C A;  3IVB A;  4Z8M A;  1RF3 A;  4X3G A;  4CA1 A;  4M4E A;  4GJH A;  1KZZ A;  2AN6 A;  1D01 A;  4KG9 A;  2FOP A;  5H9M A;  3IVV A;  4I7B A;  2F1X A;  1LB6 A;  2FOJ A;  2GKW A;  2F1W A; 
#chains in the Genus database with same CATH topology
 4K8U A;  4YSI A;  4I7D A;  1D00 A;  1D0J A;  1CZZ A;  4JJQ A;  3ZJB A;  4C9Z A;  2FOO A;  3HQM A;  4GHU A;  4O1V A;  1LB4 A;  1K2F A;  3MQS C;  2A25 A;  1YY6 A;  2CR2 A;  1CZY A;  3MQR A;  1ZMS A;  3HQI A;  5E1T A;  1FLK A;  3HU6 A;  1YZE A;  2F1Y A;  2F1Z A;  3IVQ A;  1LB5 A;  1FLL A;  4GWN A;  3HQH A;  1CA4 A;  3HQL A;  1F3V B;  1L0A A;  1CA9 A;  2XXN A;  1D0A A;  4GWM A;  1QSC A;  3HSV A;  4I7C A;  3IVB A;  4Z8M A;  1RF3 A;  4X3G A;  4CA1 A;  4M4E A;  4GJH A;  1KZZ A;  2AN6 A;  1D01 A;  4KG9 A;  2FOP A;  5H9M A;  3IVV A;  4I7B A;  2F1X A;  1LB6 A;  2FOJ A;  2GKW A;  2F1W A; 
#chains in the Genus database with same CATH homology
 4K8U A;  4YSI A;  4I7D A;  1D00 A;  1D0J A;  1CZZ A;  4JJQ A;  3ZJB A;  4C9Z A;  2FOO A;  3HQM A;  4GHU A;  4O1V A;  1LB4 A;  1K2F A;  3MQS C;  2A25 A;  1YY6 A;  2CR2 A;  1CZY A;  3MQR A;  1ZMS A;  3HQI A;  5E1T A;  1FLK A;  3HU6 A;  1YZE A;  2F1Y A;  2F1Z A;  3IVQ A;  1LB5 A;  1FLL A;  4GWN A;  3HQH A;  1CA4 A;  3HQL A;  1F3V B;  1L0A A;  1CA9 A;  2XXN A;  1D0A A;  4GWM A;  1QSC A;  3HSV A;  4I7C A;  3IVB A;  4Z8M A;  1RF3 A;  4X3G A;  4CA1 A;  4M4E A;  4GJH A;  1KZZ A;  2AN6 A;  1D01 A;  4KG9 A;  2FOP A;  5H9M A;  3IVV A;  4I7B A;  2F1X A;  1LB6 A;  2FOJ A;  2GKW A;  2F1W A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2CR2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations